We employ a recently developed variant of the functional renormalization group method for spin systems, the so-called pseudo Majorana functional renormalization group, to investigate three-dimensional spin-1/2 Heisenberg models at finite temperatures. We study unfrustrated and frustrated Heisenberg systems on the simple cubic and pyrochlore lattices. Comparing our results with other quantum many-body techniques, we demonstrate a high quantitative accuracy of our method. Particularly, for the unfrustrated simple cubic lattice antiferromagnet ordering temperatures obtained from finite-size scaling of one-loop data deviate from error controlled quantum Monte Carlo results by \sim5\%∼5% and we confirm consistency of our data with established critical exponents \nuν and \etaη of the three-dimensional Heisenberg universality class. As the PMFRG yields results in good agreement with QMC, but remains applicable when the system is frustrated, we next treat the pyrochlore Heisenberg antiferromagnet as a paradigmatic magnetically disordered system and find nearly perfect agreement of our two-loop static homogeneous susceptibility with other methods. We further investigate the broadening of pinch points in the spin structure factor as a result of quantum and thermal fluctuations and confirm a finite width in the extrapolated limit T\rightarrow0T→0. While extensions towards higher loop orders \ellℓ seem to systematically improve our approach for magnetically disordered systems we also discuss subtleties when increasing \ellℓ in the presence of magnetic order. Overall, the pseudo Majorana functional renormalization group is established as a powerful many-body technique in quantum magnetism with a wealth of possible future applications.