Punch-through failure, a critical issue in offshore engineering, occurs when a foundation penetrates through strong-over-weak soil layers. This paper presents a study on the effectiveness of skirt addition to spudcans in addressing punch-through failure through numerical simulations using the axisymmetric Particle Finite Element Method (PFEM). The validity of the PFEM is verified by simulating a spudcan penetration centrifuge test. Subsequently, PFEM simulations are conducted to analyse the penetration behaviour of both generic and skirted spudcans in stiff-over-soft clays. Results from the simulations reveal the bearing responses of spudcans as they penetrate into clays, elucidate associated failure mechanisms, and underscore the significant of considering the spudcan-driving process in estimating punch-through failure mitigation. Findings indicate that, the skirt effectively mitigates punch-through failure by increasing plug height in the lower soft layer, thus reducing the rate of bearing capacity reduction. Furthermore, critical factors such as skirt length, upper layer thickness, lower layer strength gradient, and the strength ratio between lower and upper layers are assessed through comprehensive parametric studies to evaluate the efficacy of skirted spudcans in mitigating punch-through failure, with eventual goal to provide essential guidance for practical design considerations in offshore foundation systems.