Pseudomonas Viridiflava Research Articles

First report of leaf streak caused by Pseudomonas viridiflava on garlic (Allium sativum L.) in Korea

First report of leaf streak caused by Pseudomonas viridiflava on garlic (Allium sativum L.) in Korea

Получение гетерологичных продуцентов рамнолипидов для промышленного производства высокоэффективного биосурфактанта

Rhamnolipids are promising microbial glycolipid biosurfactants that can be used as preparations for soil bioremediation in oil pollution. The expression of the rhamnolipid biosynthesis gene cluster in the main producer, Pseudomonas aeruginosa, is regulated by quorum sensing signals (QS). Complex biosynthesis regulation does not allow achieving high product yields. The production of heterologous rhamnolipid producers is a promising way to overcome the complex QS-dependent regulation of rhamnolipid biosynthesis, and also avoids the use of opportunistic Pseudomonas aeruginosa for the industrial production of rhamnolipids. Heterologous Escherichia coli BLWT-based producers with a transformant E14 productivity of 3.40±0.96 g/L were obtained on the basis of the plasmid vector pAl2–T with a construct from the native promoter and rhlAB genes, and Pseudomonas viridiflava AlC1223-based ones with the productivity of transformants P5, P6, P8 332.00±0.10, 200.00±0.10 and 180.00±0.10 g/L, respectively. The presence of rhlAB genes in the expression vector allows the obtaining monorhamnolipids for further use as an agent for the solubilization of soil hydrophobic pollutant (e. g. petroleum products), which will intensify bioremediation processes.

Comparative analysis of the tumor microbiome, molecular profiles, and immune cell abundances by HPV status in mucosal head and neck cancers and their impact on survival

ABSTRACT Head and Neck Squamous Cell Carcinoma (HNSCC) comprises a diverse group of tumors with variable treatment response and prognosis. The tumor microenvironment (TME), which includes microbiome and immune cells, can impact outcomes. Here, we sought to relate the presence of specific microbes, gene expression, and tumor immune infiltration using tumor transcriptomics from The Cancer Genome Atlas (TCGA) and associate these with overall survival (OS). RNA sequencing (RNAseq) from HNSCC tumors in TCGA was processed through the exogenous sequences in tumors and immune cells (exotic) pipeline to identify and quantify low-abundance microbes. The detection of the Papillomaviridae family of viruses assessed HPV status. All statistical analyses were performed using R. A total of 499 RNAseq samples from TCGA were analyzed. HPV was detected in 111 samples (22%), most commonly Alphapapillomavirus 9 (90.1%). The presence of Alphapapillomavirus 9 was associated with improved OS [HR = 0.60 (95%CI: 0.40–0.89, p = .01)]. Among other microbes, Yersinia pseudotuberculosis was associated with the worst survival (HR = 3.88; p = .008), while Pseudomonas viridiflava had the best survival (HR = 0.05; p = .036). Microbial species found more abundant in HPV- tumors included several gram-negative anaerobes. HPV- tumors had a significantly higher abundance of M0 (p < .001) and M2 macrophages (p = .035), while HPV+ tumors had more T regulatory cells (p < .001) and CD8+ T-cells (p < .001). We identified microbes in HNSCC tumor samples significantly associated with survival. A greater abundance of certain anaerobic microbes was seen in HPV tumors and pro-tumorigenic macrophages. These findings suggest that TME can be used to predict patient outcomes and may help identify mechanisms of resistance to systemic therapies.

Molecular based associations of bacterial pathogens with citrus: Implications for toxicology and disease management

The losses associated with the bacterial diseases of citrus leaves and fruits have been reported throughout all of Pakistan's citrus-growing regions and a lot of work was done on the morphological characterization of pre and post-harvest pathogens. However, this issue has not been addressed in Khanpur, which is a major citrus-producing city in Pakistan and can help in the economic growth of the country. The citrus fruits in the area under study exhibit disease symptoms during pre and post-harvesting, but the actual disease agents have not yet been identified. The retrospective object of the current research is to study the pathogenic variation along with the investigation of bacterial disease incidence i.e. citrus canker, bacterial spots, & HLB in citrus fruit. During a survey conducted in November 2019 and 2020, bacterial isolates from symptomatic citrus fruits were obtained from randomly chosen orchards in Khanpur.The disease assessment was estimated by determining prevalence, severity, and disease incidence (DI). The bacterial isolates were identified morphologically and further through 16S rRNA gene amplification. The identified species were Pseudomonas syringae, Pseudomonas viridiflava, Serratia marcescens, Xanthomonas axonopodis pv citri, and Candidatus liberibacter. In the pathogenicity test, the Xanthomonas strains responsible for the canker disease caused the most severe disease symptoms. To our knowledge, this is the first report on pathogens of citrus fruits in Khanpur. Given the significant contribution of citrus fruits to household income and foreign exchange in Pakistan, this study illustrates the molecular-based association of bacterial pathogens of citrus and the toxic behavior of pathogens which helps to provide recommendations on genetic testing and to develop management programs for disease management. The molecular identification of citrus pathogens will empower the citrus growers, researchers, and regulatory agencies to make informed decisions that will protect citrus crops, reduce economic losses, and promote sustainable agriculture. It is also likely to play an increasingly vital role in the future of citrus cultivation..

Genome-Based Taxonomy of Species in the Pseudomonas syringae and Pseudomonas lutea Phylogenetic Groups and Proposal of Pseudomonas maioricensis sp. nov., Isolated from Agricultural Soil.

Species in the phylogenetic group Pseudomonas syringae are considered the most relevant plant pathogenic bacteria, but their taxonomy is still controversial. Twenty named species are validated in the current taxonomy of this group and in recent years many strains have been genome-sequenced, putative new species have been proposed and an update in the taxonomy is needed. A taxonomic study based on the core-genome phylogeny, genomic indices (ANI and GGDC) and gene content (phyletic pattern and Jaccard index) have been applied to clarify the taxonomy of the group. A phylogenomic analysis demonstrates that at least 50 phylogenomic species can be delineated within the group and that many strains whose genomes have been deposited in the databases are not correctly classified at the species level. Other species names, like "Pseudomonas coronafaciens", have been proposed but are not validated yet. One of the putative new species is taxonomically described, and the name Pseudomonas maioricensis sp. nov. is proposed. The taxonomies of Pseudomonas avellanae and Pseudomonas viridiflava are discussed in detail as case studies. Correct strain identification is a prerequisite for many studies, and therefore, criteria are given to facilitate identification.

Chemical components of different solvent extracts of Asclepias curassavica L. and antibacterial effect of the extracts on tomato pathogens

The use of environmentally friendly and sustainable agricultural methods in the control of diseases and pests is of great importance. In both conventional and organic agricultural production systems, the utilization of various plant extracts as part of integrated pest management has gained significance in recent years. The chemical constituents of various solutions derived from the flowers, leaves, and roots of the Asclepias curassavica L. plant were investigated, along with the possibilities of utilizing these solutions in the control of tomato plant pathogenic bacteria. As a result of the analysis, acetic acid in 60% and 80% ethanol solutions, as well as acetic acid methy ester in 60% and 80% methanol solutions, were detected in the flowers, leaves, and roots. The effects of A. curassavica flower, leaf, and root extracts, prepared using three different solvents (water, methanol, and ethanol), were investigated on eight different pathogenic bacteria (Agrobacterium tumefaciens, Clavibacter michiganensis, Dickeya zeae, Pectobacterium caratovorum, Pseudomonas phaseolicola, Pseudomonas tomato, Pseudomonas viridiflava, and Xanthomonas euvesicatoria) that cause diseases in plants. Several main compounds such as acetic acid, acetic acid. methyl ester, Furfural, 2-Furanmethanol, 4H-Pyran-4-one. 2.3-dihydro-3.5-dihydroxy-6-methyl-, Glycerin, Benzo furan. 2.3-dihydro- and 5-Hydroxy methyl furfural were identified as analyzed by GC-MS with different concentrations of ethanol and methanol solutions used for the flower, leaves and root of A. curassavica plants. The flower extract prepared with 80% ethanol exhibited a higher inhibition zone (ranging from 1.5 mm to 5.3 mm) in all pathogens, compared to other applications. The successful suppression effect of A. curassavica flower extracts on this disease is promising, especially in organic farming areas. Additionally, since it is environmentally friendly and sustainable, it can be included in integrated control methods to prevent the loss of productivity caused by diseases.

Gum Arabic edible coating embedded aqueous plant extracts: Interactive effects of partaking components and its effectiveness on cold storage of fresh-cut capsicum

This study investigated the interactive effects of components in gum Arabic-based coating enriched with aqueous extracts of Syzygium aqueum, Diploglottis bracteata, and Tasmannia lanceolata on properties of edible coating/film. Response surface methodology was employed to optimize the films based on their physical and permeability properties. It was shown that the concentration of the components significantly influenced these characteristics. The coating demonstrated strong antimicrobial activity against Pseudomonas viridiflava, a main cause of soft rot in vegetables, when using 5.00% S. aqueum, 5.00% D. bracteata, and 9.35% T. lanceolata with lower concentrations of gum Arabic and MCT oil. The optimized coating was applied to fresh-cut red capsicum, and its effects were evaluated. The coating effectively inhibited microbial growth, maintaining low bacterial load (ca. 3 log CFU. g−1) until day 10 of storage. Sensory evaluations also showed positive liking scores for appearance, aroma, and flavor, indicating that the coating enhanced the overall sensory experience of the capsicum. Despite these positive outcomes, challenges regarding moisture retention and firmness preservation during storage were identified. The coating did not adequately preserve these qualities, highlighting the need for further research to optimize the formulation for commercial applications. Nonetheless, incorporating plant extracts in the gum Arabic-based coating holds promise for extending the shelf life of fresh-cut capsicum while improving its sensory attributes.

Toxicity of Diphenyltin Chloride on viable count of aerobic bacteria from River Benue.

This research was carried out to determine the toxicity of diphenyltin chloride on viable count of freshwater aerobic bacteria. Water samples obtained from a depth of 15 cm at five sampling points along river Benue were spiked with 3 mM of DPTCl to have a duplicate setup of three (3) treatments. Organotin degradation was determined by measuring the decrease in the concentration of DPTCl using an X-ray fluorescence spectrophotometer on days 0, 14, 28, 42, and 56 and the viable count of bacteria was also determined using spread plate technique on MSA. DPTCl concentration was further varied (5 mM, 7 mM and 10 mM) to test levels of toxicity to viable count of bacteria as well as bacterial resistance. patio sequencing technique was used to determine the metagenomics of bacteria species capable of DPTCl degradation from the water samples. Percentage of chemically degraded (40.29%) during the initial two weeks of experiment when the bacterial population was high, was more than the percentage degraded (11.49%) during the last two weeks of the experiment when the biocidal effect of DPTCl had drastically reduced the bacterial population. Of the initial bacterial viable count of 47.2 x 102 that survived the 56 days degradation exercise, only 1.8x101 (0.38%) grew on 7 mM concentration of DPTCl, and none on 10 mM DPTCl. The impact of DPTCl on the viable count of bacteria was statistically significant. Stenotrophomonas spp (29.6%) was the dominant bacterium in DPT degradation, others include; Comamonas spp (9.31%), Microbacterium spp (8.41%) Pseudomonas viridiflava (4.18%), and Stenotrophomonas geniculata (3.46%). Organotins. Diphenyltin though a di-alkyl organotin, is equally a toxic and persistent pollutant that cannot be easily degraded without the use of nutrient amendment. The toxic effect of DPT as demonstrated in this study shows that TPT and other tri-alkyl organotin should not be considered detoxified especially against microorganisms simply because they have been de-alkylated.Sites contaminated by organotins should not be considered remediated until all di and mono alkyl derivatives are completely degraded. Since our natural environments usually have no sufficient nutrient amendments for elimination of pollutants, there is need to engage abiotic processes that can assist the activities of microorganisms in order to speed up remediation process.

Valorisation of Three Underutilised Native Australian Plants: Phenolic and Organic Acid Profiles and In Vitro Antimicrobial Activity.

Tasmannia lanceolata, Diploglottis bracteata and Syzygium aqueum are understudied native Australian plants. This study aimed to characterise the non-anthocyanin phenolic and organic acid profiles of the aqueous extracts obtained from the leaves of T. lanceolata and fruits of D. bracteata and S. aqueum by UHPLC-Q-Orbitrap-MS/MS and UHPLC-TQ-MS/MS. A total of 39, 22, and 27 non-anthocyanin polyphenols were tentatively identified in T. lanceolata, D. bracteata, and S. aqueum extracts, respectively. Furthermore, sugars and ascorbic acid contents as well as in vitro antioxidant and antimicrobial activities of the extracts were determined. Response surface methodology was applied to achieve an extract blend with a strong inhibitory effect against Pseudomonas viridiflava, the main cause of soft rot in vegetables, Bacillus subtilis, Rhodotorula diobovata and Alternaria alternata. The identified compounds including organic acids (e.g., quinic, citric and malic acids) and polyphenols (e.g., catechin, procyanidins, and ellagitannins) might contribute to the observed antimicrobial activity. Furthermore, this study provides the most comprehensive phenolic profiles of these three underutilised native Australian plants to date.

Pseudomonas californiensis sp. nov. and Pseudomonas quasicaspiana sp. nov., isolated from ornamental crops in California.

Five bacterial strains were isolated from symptomatic leaves of Achillea millefolium, Delphinium sp. and Hydrangea sp. in California. Colonies isolated on King's medium B (KMB) appeared white, mucoid and round, similar to Pseudomonas species. Phylogenetic analyses based on 16S rRNA, rpoB, rpoD and gyrB genes placed the bacteria into three distinct groups within Pseudomonas that were most closely related to Pseudomonas viridiflava, Pseudomonas cichorii or Pseudomonas caspiana. To further characterize the strains, phenotypic analyses and the following tests were performed: fatty acid methyl ester composition, LOPAT, fluorescence on KMB, Biolog assay, and transmission electron microscopy. Finally, whole genome sequencing of the strains was conducted, and the sequences were compared with reference genomes of Pseudomonas species based on average nucleotide identity (ANI). The first group, which consists of three strains isolated from delphinium, hydrangea and achillea, had 95.6-96.9 % pairwise ANI between each other; the second group consists of two strains isolated from delphinium that had 100 % pairwise ANI. Although comparisons of the two groups with publicly available genomes revealed closest relationships with P. viridiflava (91.6 %), P. caspiana (88.3 %) and P. asturiensis (86.7 %), ANI values were less than 95 % compared to all validly published pseudomonads. Combining genomic and phenotypic data, we conclude that these strains represent two new species and the names proposed are Pseudomonas quasicaspiana sp. nov. (type strain DSMZ 11 30 42T=LMG 32 434T) for the strains isolated from delphinium, achillea and hydrangea and Pseudomonas californiensis sp. nov. (DSMZ 11 30 43T=LMG 32 432T) for the two strains isolated from delphinium. The specific epithets quasicaspiana and californiensis were selected based on the close phylogenetic relationship of strains with P. caspiana and on the geographic location of isolation, respectively.

Genome Sequence Resource for Strains of Pseudomonas syringae Phylogroup 2b and P. viridiflava Phylogroup 7a Causing Bacterial Stem Blight of Alfalfa.

Genome Sequence Resource for Strains of Pseudomonas syringae Phylogroup 2b and P. viridiflava Phylogroup 7a Causing Bacterial Stem Blight of Alfalfa.

Biochemical Diversity, Pathogenicity and Phylogenetic Analysis of Pseudomonas viridiflava from Bean and Weeds in Northern Spain.

Pseudomonas viridiflava was originally reported as a bean pathogen, and subsequently as a wide-host range pathogen affecting numerous plants species. In addition, several authors have reported the epiphytic presence of this bacterium in “non-host plants”, which may act as reservoir of P. viridiflava and source of inoculum for crops. A new biotype of this bacterium, showing an atypical LOPAT profile, was found in Asturias, a Northern region of Spain, causing significant damage in beans, kiwifruit, lettuce, and Hebe. In order to investigate the involvement of weeds in bean disease, samples were collected from beans and weeds growing in the same fields. A total of 48 isolates of P. viridiflava were obtained, 39 from weeds and 9 from beans. 48% and 52% of them showed typical (L− O− P+ A− T+) and atypical (L+ O− P v A− T+) LOPAT profiles, and they displayed high biochemical diversity. Regarding virulence factors, the T-PAI and S-PAI pathogenicity islands were found in 29% and 70.8% of the isolates, 81.2% displayed pectinolytic activity on potato slices, and 59% of the weed isolates produced symptoms after inoculation on bean pods. A phylogenetic tree based on concatenated rpoD, gyrB, and gltA sequences separated the strains carrying S-PAI and T-PAI into different clusters, both containing isolates from beans and weeds, and pathogenic as well as non-pathogenic strains. Closely related strains were found in the two hosts, and more than half of the weed isolates proved to be pathogenic in beans. This is consistent with the role of weeds as a reservoir and source of inoculum for bean infection. Detection of P. viridiflava in weeds throughout the year further supports these roles.

Metagenetic characterization of bacterial communities associated with ready-to-eat leafy vegetables and study of temperature effect on their composition during storage

Ready-to-eat (RTE) and fresh-cut vegetables meet the current needs for healthy and easy-to-prepare food. However, raw vegetables are widely known to harbor large and diverse bacterial communities promoting spoilage and reducing their shelf-life. A better understanding of their bacterial community and the impact of various environmental factors on its composition is essential to ensure the production of high-quality fresh-cut produce. Therefore, a metagenetic amplicon approach, based on gyrB sequencing, was applied for deciphering the bacterial communities associated with the spoilage of RTE rocket and baby spinach and monitoring the changes occurring in their composition during storage at different temperatures. Our results indicated that Pseudomonas genus was the main spoilage group for both leafy vegetables. Specifically, Pseudomonas viridiflava was dominant in most samples of rocket, while a new Pseudomonas species as well as, Pseudomonas fluorescens and/or Pseudomonas fragi were highly abundant in baby spinach. A significant variability on bacterial species composition among different batches of each vegetable type was observed. In the case of baby spinach, the impact of temperature and/or storage time on bacterial microbiota was not explicitly revealed at batch-level. Concerning rocket, the storage time was the most influential factor resulting in the reduction of Pseudomonas species’ abundances and the parallel increase of lactic acid bacteria abundances. The results suggest that a large-scale sampling and further investigation of the various environmental factors shaping the microbiota are needed for gaining deeper knowledge of the diverse bacterial communities on RTE leafy vegetables and thus, enhance the quality of these products.

Seed microbiota revealed by a large-scale meta-analysis including 50 plant species.

Seed microbiota constitutes a primary inoculum for plants that is gaining attention owing to its role for plant health and productivity. Here, we performed a meta-analysis on 63 seed microbiota studies covering 50 plant species to synthesize knowledge on the diversity of this habitat. Seed microbiota are diverse and extremely variable, with taxa richness varying from one to thousands of taxa. Hence, seed microbiota presents a variable (i.e. flexible) microbial fraction but we also identified a stable (i.e. core) fraction across samples. Around 30 bacterial and fungal taxa are present in most plant species and in samples from all over the world. Core taxa, such as Pantoea agglomerans, Pseudomonas viridiflava, P. fluorescens, Cladosporium perangustum and Alternaria sp., are dominant seed taxa. The characterization of the core and flexible seed microbiota provided here will help uncover seed microbiota roles for plant health and design effective microbiome engineering.

First Report of Southern Blight, Caused by Athelia rolfsii (syn. Sclerotium rolfsii) on Hellebores in North America.

Lenten rose (Hellebores hybridus) is an herbaceous perennial grown in landscapes and valued for early spring flowers and high levels of deer resistance. An additional benefit as a landscape plant comes from the high level of disease resistance, with only three fungal pathogens reported in North America. In August of 2021, a Lenten rose plant within a mature landscape in Silver Spring, MD, USA, (lat 39.116629 long 77.043198) was found with a collapsed canopy and brown stems near the soil line. Small clusters of brown sclerotia-like objects were seen along the stem. Samples of the sclerotia and diseased tissue were dipped in 70 percent ethanol for 15 sec, transferred to 5 percent NaClO for 30 sec, immersed in sterile water for one minute, then plated onto Potato Dextrose Agar. Sclerotia-like objects germinated and white mycelia covered the plates within five days of germination. Hyphae emerged from diseased tissue within two days and also grew rapidly. Cultures from sclerotia-like objects and diseased tissue produced white sclerotia which melanized to brown spherical sclerotia ranging in size from two to four mm. Culture samples (1 cm square) were excised from the culture plates and transferred to the base of three two-year old potted hellebore plants. Control plants had blocks of PDA placed at the base of the plants. Plants were placed in plastic bags for two days to maintain humidity, then maintained at room temperature without plastic bags. Petioles turned brown and collapsed within seven days of inoculation. White, fan-like hyphae were present along with maturing sclerotia. Samples from surface sterilized tissue and sclerotia produced the same culture morphology as the originally isolated cultures. Non-inoculated plants remained healthy, and the pathogen was not isolated from non-inoculated plants. Individual DNA samples were prepared from original cultures and the re-isolated cultures. Molecular identification was performed by amplification of the internal rRNA transcribed spacer region (ITS1/4, White et al. 1990 ), the large subunit rRNA (LSU), and the elongation factor-1A (EF1a). Amplification products were cloned into TOPO-TA pcr4 vector and sequenced (Macrogen USA). Sequences were submitted to GenBank for IT1/4 (OK172559) and LSU (OK172560). Homology to ITS1/4 was found with Athelia rolfsii (MN622806), to LSU with Athelia rolfsii (MT225781) and for EF1a with Athelia rolfsii (MW322687). This is the first report of Athelia rolfsii on Hellebores in North America (Farr, D.F &amp; Rossman, A.Y. Fungal Databases, U.S. National Fungus Collections, ARS, USDA. Retrieved September 10, 2021). This report is unique in that few pathogens are known to infect Hellebores(Taylor et al. 2011) and southern blight is not commonly isolated in landscape plantings at Maryland latitudes. 1. White et al. PCR Protocols: A Guide to Methods and Amplifications. Academic Press, San Diego, 1990 2. Taylor, R.K., Romberg, M.K. &amp; Alexander, B.J.R. A bacterial disease of hellebore caused by Pseudomonas viridiflava in New Zealand. Australasian Plant Dis. Notes 6, 28–29, 2011.

Identification of Pseudomonas viridiflava, causal agent of onion (Allium cepa L.) bulb rot

Objective: To phenotypically and molecularly characterize and identify the causal agent of onion (Allium cepaL.) bulb rot in Morelos, Mexico.Methodology: Fluorescent bacteria from onion bulb tissue with symptoms of rot were isolated; the LOPATtest was used to describe them and subsequently they were identified by partial 16S rRNA gene amplification.Pathogenicity in vegetables and plants was evaluated injecting a suspension with 108 CFU mL-1of the pathogen.Results: Phenotypic characterization and 16S rRNA nucleotide sequencing showed 100% identity withPseudomonas viridiflava as the causal agent of onion bulb rot. The pathogen caused infection in broccoli (Brassica oleracea L.), spring onion (Allium fistulosum L.), purple onion (Allium cepa L.), cauliflower (Brassica oleracea var. botrytis L.), leek (Allium porrum L.), and carrot (Daucus carota L.), as well as in plant species such as jalapeño pepper (Capsicum annuum var. annuum L.), bean (Phaseolus vulgaris L.), and tomato (Solanum lycopersicum L.).Implications: This information is important for agriculture in Mexico. Pseudomonas viridiflava is a bacterialpathogen with high potential to infect new hosts. This is the first report of P. viridiflava causing onion rot in Mexico.Conclusions: Pseudomonas viridiflava is the causal agent of onion bulb r

Seedborne Bacteria of Orange and Black Colour Carrots in Turkey

Carrot (Daucus carota L.) is among the most economically important vegetable crops worldwide. Seedborne bacterial pathogens of carrot cause important damages to seed quality and yield of plants. In this study, seedborne bacteria were determined on some carrot seeds sown in Turkey. Seeds of different orange and black color varieties of carrot were collected from Eregli and Kasınhanı districts of Konya province, where the highest carrot production is reported. Subsamples of 10,000 seeds were soaked in 100 ml sterile saline (0.85% NaCl) with 0.02% Tween 20 overnight at 5 °C, YDCA, KB, MKM, MD5A and mTBM media were used for bacterial isolation and bacterial morphological characterization. Biochemical, physiological and molecular methods were used for the identification of the bacterial isolates. Pathogenicity tests of strains were performed on orange color carrots, and pathogenic strains induced a hypersensitive reaction in tobacco plants. The 60 pathogenic and saprophytic bacterial strains were obtained belong to Pseudomonaceae, Bacillaceae, and Xanthomonadaceae families. There were twenty-three seed samples on 5 different orange carrot cultivars Maestro, Bolero, Sireco, Natuna and Romans, and 11 black carrot genotype of traditional cultivar ‘Eregli’. Two pathogenic bacteria were defined as Xanthomonas hortorum pv. carotae and Pseudomonas viridiflava at different percent infestation ratios (17.39-18.18%) and (9.09-13.04%) on orange and black carrot seed samples. To the best of our knowledge, it is the first report of P. viridiflava on carrot seeds in Turkey.

Bacterial Disease Complex Including Bleached Spot, Soft Rot, and Blight on Onion Seedlings Caused by Complex Infections.

In 2018, a bacterial disease complex composed of bleached spots and soft rot-blight on onion seedlings was observed in nursery beds in Changnyeong, a major onion-producing county in South Korea. Four bacteria isolated from the diseased lesions were identified: Pseudomonas viridiflava, Acidovorax avenae subsp. avenae, Pantoea ananatis, and Xanthomonas axonopodis, respectively. We referred to the four strains as a "bacterial disease complex" because they were isolated from the same sample with multiple symptoms. We examined the synergistic activity among the four strains to understand their relationships and roles. We monitored invivo bacterial population density and disease progression after artificially inoculating the bacteria on onion seedlings at a temperature of 22 or 28°C. The disease pattern progressed sooner at 28 than at 22°C (by an average of 4 to 6 days). The rate of disease progression induced by inoculation of P. ananatis alone was consistent with that induced by coinoculation of P. ananatis with the other strains, regardless of the temperature (22 or 28°C). The invivo growth of P. ananatis on onion seedlings was not different after inoculation alone versus together with the other strains. The rate of disease progression induced by P. viridiflava was similar when inoculated alone and when inoculated with other tree strains at 28°C, but disease progression induced by inoculation alone was slower at 22°C. The invivo growth of P. viridiflava or X. axonopodis on onion seedlings decreased rapidly or gradually, respectively, when inoculated with the other strains. Coinfection with the other three strains had repression effects on the growth of P. viridiflava, a slight effect on X. axonopodis, and no effect on P. or A. avenae subsp. avenae invivo. These results indicate that the strains coexist or interact antagonistically, rather than synergistically, depending on the conditions. These results were consistent with the results of the invitro growth inhibition assay, in which P. viridiflava growth was inhibited by X. axonopodis or P. ananatis. These results also confirmed that X. axonopodis is present on bleached spots and P. viridiflava on soft rot-blight lesions, and that P. viridiflava and P. ananatis cause soft rot-blight but do not coexist. A. avenae subsp. avenae is a minor causative pathogen of bleached spots on onion seedlings, but it is not significantly affected by temperature and has no antagonistic or synergistic interactions with X. axonopodis.

First Report of Leaf Blight of Adenophora triphylla var. japonica caused by Pseudomonas viridiflava in Korea.

Severe disease with leaf spots and necrotic symptoms were observed in Adenophora triphylla var. japonica (Regel) Hara (A. triphylla) during the survey in July 2020 on a field in Andong, Gyeongbuk province, Korea. It is a highly valued medicinal plant used to treat various diseases, including cough, cancer, and obesity. The infected plants initially showed spots with halo lesions, at later stages, enlarged and spread to the leaves, which the lesions becoming yellowing and chlorotic (Fig. 1). In some areas, disease incidence was up to 15% of the plants. The symptomatic samples were collected from A. triphylla and cut into 4 to 5 mm squares, surface-sterilized in 1% sodium hypochlorite for 1 min, rinsed three times, and macerated in sterile distilled water (SDW). They were spread onto nutrient agar (NA) plates and incubated at 28°C for 3 days. The representative bacterial strains selected for identification showed fluorescent colonies on King's medium B (KB). Fifteen isolates from independent samples were subjected to biochemical and pathogenicity tests. The isolates induced a hypersensitive reaction in tobacco leaves, gave a reaction in the anaerobe respiratory test, and were negative for levan, oxidase, arginine dihydrolase, gelatin hydrolysis, aesculin hydrolysis, and starch hydrolysis. The isolated strains presented the following LOPAT profile: - - + - +. The Biolog GN2 microplate and the Release 4.20 system putatively found the isolate to exhibit 93% similarity with the bacterium, Pseudomonas viridiflava. Likewise, analysis of FAME profiles using the Microbial identification system (Sherlock version 3.1) also characterized the representative bacterial strain as P. viridiflava with 87% similarity. The genomic DNA of the isolate was extracted, and the 16S rDNA sequence was amplified with a universal bacterial primer set (27F and 1492R). The sequence was submitted to GenBank under the accession number MT975233. BLASTn analysis yielded 99.79% identity with P. viridiflava strain RT228.1b (accession no. AY604846.1) and 99.72% similarity with P. viridiflava KNOX249.1b strain (accession no. AY604848.1). Phylogenetic dendrogram constructed from the comparative analysis of 16S rDNA gene sequences showing the relationship between P. viridiflava GYUN274 and related Pseudomonas species (Fig. 2). Pathogenicity tests were conducted three times on seedling of A. triphylla by spraying 50 ml of bacterial suspensions of a 24-h culture in KB medium (108 CFU/ml). The leaves inoculated with SDW alone did not develop symptoms; however, the plants treated with isolated bacterial suspensions developed halo and blight symptoms similar to those observed in the field 7 days post-inoculation. Finally, Koch's postulates were verified by re-isolating P. viridiflava from all symptomatic tissues and determined to be morphologically identical to the original isolates. To our knowledge, this is the first report of leaf blight disease of A. triphylla caused by P. viridiflava in Korea. Based on the observed symptoms, and identification by morphological characteristics, molecular data, and pathogenicity against the host plant, the proper control measures can be identified in future studies.

Pseudomonas alliivorans sp. nov., a plant-pathogenic bacterium isolated from onion foliage in Georgia, USA

This study provides a taxonomic characterization of three bacterial strains isolated from onion seedlings in Georgia USA. Yellow-colored colonies were isolated, and a diffusible fluorescent pigment was visible under ultraviolet light on King’s medium B. Preliminary analysis of the basic phenotype tests and 16S rRNA gene sequence analysis indicated the onion strains were closely related to Pseudomonas viridiflava with the highest similarity to P. viridiflava DSM 6694T (99.6%). The phylogenomic analyses based on whole genome sequences showed that the onion strains formed a separate monophyletic clade from other species with P. viridiflava as the closest neighbor. When the onion strains and the P. viridiflava type strain were compared, the average nucleotide identity values was 91.6%. Additionally, the digital DNA–DNA hybridization values of the onion strains were 45.8% or less when compared to the type strains of their close relatives, including P. viridiflava. In addition, biochemical, physiological features, and cellular fatty acid compositions were determined for a polyphasic taxonomic analysis. The results supported that the three onion strains represented a novel Pseudomonas species. We propose a new species as Pseudomonas alliivorans sp. nov., with 20GA0068T (=LMG 32210T = CFBP 8885T) as the type strain. The DNA G + C content of the strain 20GA0068T is 59.1 mol%.