Proximate Populations Research Articles

Evidence for spatial coherence in time trends of marine life history traits of Atlantic salmon in the North Atlantic

AbstractA hierarchical Bayesian life cycle model is presented that considers spatial covariation of marine life history traits of Atlantic salmon (Salmo salar) populations in the North Atlantic. The model is based on a collective analysis of the dynamics of 13 stock units (SUs) from two continental stock groups (CSGs) in North America and Southern Europe in a single hierarchical model over the period 1971–2014. The model sets up a new assessment framework for Atlantic salmon stocks. It also provides a framework to investigate the drivers of changes in Atlantic salmon population dynamics including disentangling the effects of fisheries from those of environmental factors in a hierarchy of spatial scales. It is used to test the hypothesis of a strong spatial synchrony in marine life history dynamics of Atlantic salmon populations. The trends in two key parameters associated with the early marine phase of the life cycle are estimated: (i) the marine survival during the first summer–autumn spent at sea and (ii) the proportion of fish maturing after the first winter at sea. The results provide evidence of a decline in the marine survival together with an increase in the proportion of fish that mature after the first winter at sea, common to all SUs. Our results show an increased coherence in the covariations of trends in these two marine life history traits related to geographic proximity of SUs which support the hypothesis of a coherent response of geographically proximate Atlantic salmon populations that likely share similar migration routes.

Local adaptation of phenology revealed in outcrosses between spawning segments of a salmonid population

Local adaptation has been demonstrated in spatially or temporally distant animal populations but seldom in proximate populations. To address the scale of local adaptation in Pacific salmon (Oncorhynchus spp.), two generations of hybrids between temporally separated spawning segments were made in a population of pink salmon (O.gorbuscha) and compared with controls to evaluate the genetic architecture underlying adult migration time and to test for declines in marine survival that resulted from outbreeding depression. Bayesian mixed-effects models revealed that adult migration times in hybrid lines were intermediate to those of controls and that additive sources of genetic variation were significant, thereby indicating that local adaptation has acted on additive genetic variation in shaping this trait. Similarly, a line cross analysis revealed that an additive model best described the genetic architecture of adult migration time. In contrast, marine survival was generally similar between control and hybrid lines, which suggested that the effect of outbreeding upon marine survival was minimal at such a fine scale of genetic divergence. The implications of these results are that (a) local adaptation can facilitate genetic divergence of life history traits between proximate subpopulations; (b) artificial relaxation of natural barriers to gene flow can cause maladaptive shifts in life history traits; and (c) wild populations may harbour fine-scale adaptive variation that supports productivity and sustainability.

Household-Level Population Estimates and Building Setbacks near Underground Natural Gas Storage Wells in PA, OH, NY, WV, MI, and CA

Health impacts have been reported in people living near oil and gas operations (e.g., asthma exacerbation). Towards assessing these risks, studies quantifying proximate populations generally assume an even spatial distribution of population within an administrative unit (e.g., census block). These proportion population allocation (PPA) methods can be improved by excluding non-residential land use areas (i.e. dasymetric mapping), but are still too imprecise to obtain reliable estimates of population densities at small spatial scales (e.g., 50m2). Here we present ABODE (Allocation By Occupied Domicile Estimation), a novel household-level population estimation method that combines geospatial addresses, building footprints, and U.S. Census data. We assess ABODE and PPA methods by comparing population estimates within 200m of active underground natural gas storage (UGS) wells (n = 8,963) in six U.S. states. Overall, ABODE predicts slightly higher population estimates compared to PPA (48,126 vs. 43,052); however estimation bias varied by state and by individual well. ABODE captured higher populations within 200m of UGS wells in OH, WV, and PA with increases of 6, 54, and 66% compared to the PPA method, respectively. Conversely, the ABODE method captures fewer populations in NY, MI, and CA, with decreases of 4, 7, and 26%, respectively. By explicitly identifying households near active UGS wells in the six states, we also quantify well-to-building relationships and compare to state surface setback regulations where they exist. An estimated 9.4% (840) of UGS wells across the six states have at least one building within a regulated setback distance. This results in 2,769 households, or an estimated 4,816 people, living within these states’ respective setbacks (e.g., 100 - 625ft.). The spatially-resolved nature of the ABODE method provides a clear advancement from previous proximity-based methods towards understanding present and future land-use conflicts.

Discovered and disappearing? Conservation genetics of a recently named Australian carnivorous marsupial.

Five new species within the Australian carnivorous marsupial genus Antechinus have recently been named, at least two of which are threatened. Important facets of the habitat use and extinction risk of one of these new species, the buff‐footed antechinus, A. mysticus, are not well understood. Previous research has suggested that the species utilizes a broad range of inter‐connected forest habitats in southeast Queensland (Qld), Australia. Based on this potentially connected habitat, we predicted that A. mysticus should have low population genetic structure, particularly in relation to its congener, the spatially restricted, high altitude, closed‐forest A. subtropicus. We genotyped nine microsatellite loci for six populations of A. mysticus, sampled throughout their known range in eastern Australia, and compared them with four proximate populations of A. subtropicus. Surprisingly, genetic structuring among southeast Qld populations of A. mysticus was moderate to high and similar to that between A. subtropicus populations. We postulate that all A. mysticus populations have declined recently (<100 generations), particularly the northernmost southeast Qld population, which may be at risk of extinction. Our results suggest that A. mysticus is limited to a more scattered and fragmented distribution than previously thought and may be in decline. The identification of population decline in this study and recently in other Antechinus suggests the extinction risk of many Australian mammals should be reassessed.

Forensic ancestry analysis in two Chinese minority populations using massively parallel sequencing of 165 ancestry‐informative SNPs

Ancestry inference based on SNPs with marked allele frequency differences in diverse populations (called ancestry-informative SNP (AISNP)) is rapidly developed with the technology advancements of massively parallel sequencing. Despite the decade of exploration and broad public interest in the peopling of East-Asians, the genetic landscape of Chinese Silk Road populations based on the AISNPs is still little known. In this work, 206 unrelated individuals from Chinese Uyghur and Hui populations were firstly genotyped by 165 AISNPs (The Precision ID Ancestry Panel) using the Ion Torrent Personal Genome Machine system. The ethnic origin of two investigated populations and population structures and genetic relationships were subsequently investigated. The 165 AISNPs panel not only can differentiate Uyghur and Hui populations but also has potential applications in individual identification. Comprehensive population comparisons and admixture estimates demonstrated a predominantly higher European-related ancestry (36.30%) in Uyghurs than Huis (3.66%). Overall, the Precision ID Ancestry Panel can provide good resolution at the intercontinental level, but has limitations on the genetic homogeneous populations, such as the Hui and Han. Additional population-specific AISNPs remain necessary to get better-scale resolution within geographically proximate populations in East Asia.

Genetic structure of intertidal shimofuri goby in the Zhejiang Coastal Sea, China: implications for management

The shimofuri gobies Tridentiger bifasciatus (Gobiidae: Gobionellinae), are small, benthic fish indigenous to the coastal waters of the West Pacific Ocean. In this study, 582-bp mitochondrial cytochrome C subunit I (COI) and 789-bp nuclear ryanodine receptor 3 (Ryr3) DNA sequence data were employed to evaluate population genetic structure of T. bifasciatus. A total of 14 distinct COI haplotypes and 14 distinct Ryr3 alleles were recovered for 140 samples collected from eight intertidal localities in the Zhejiang Coastal Sea, China. The indices of haplotype and nucleotide diversity within populations are 0.42–0.87 (Hd) and 0.13–0.54% (π) for COI and 0.26–0.59 (Hd) and 0.05–0.09% (π) for Ryr3. FST distances between population pairs are − 0.007–0.768 (COI) and − 0.030–0.311 (Ryr3). The south population of Cangnan exhibits significant divergence from all the north populations (p < 0.01). The median-joining (MJ) network indicates that one COI haplotype and one Ryr3 allele found in Cangnan are absent in all the north populations. This observation of phylogeographic break can be interpreted: (1) the dispersal of T. bifasciatus is driven more by small-scale local currents, including inflows of local rivers than by large-scale oceanographic currents; (2) the recruitment is frequently shared among the geographically proximate populations in the northern areas of Zhejiang Coastal Sea, whereas infrequently shared between Cangnan and geographically distant north populations. Tajima’s D statistics, star-like pattern observed on the MJ network, and mismatch distribution analysis present compelling evidence for pronounced demographic fluctuations for the overall population of T. bifasciatus, and infer that the species along the Zhejiang Coastal Sea has undergone a sudden expansion following bottleneck in the past, probably during the quaternary glaciations. The central components for management efforts should occur with preserving ecological diversity and integrity, especially in areas with strong rates of economic growth and high degrees of artificial disturbance, as well as acknowledging separate management units for Cangnan and the other north populations of T. bifasciatus in the Coastal Sea.

Massively parallel sequencing of 165 ancestry informative SNPs in two Chinese Tibetan-Burmese minority ethnicities

The Tibeto-Burman language, one subfamily of the Sino-Tibetan languages, is spoken by over 60 million people all over East Asia. Yet the ethnic origin and genetic architecture of Tibeto-Burman speaking populations remain largely unexplored. In the present study, 169 Chinese individuals from Tibeto-Burman speaking populations (two ethnic groups: Tibetan and Yi) in four different geographic regions in western China were analyzed using the Precision ID Ancestry Panel (165 AISNPs) and the Ion PGM System. The performance and corresponding forensic statistical parameters of this AISNPs panel were investigated. Comprehensive population genetic comparisons (143 populations based on Kidd’ SNPs, 92 populations on the basis of Seldin’ SNPs and 31 populations based on the Precision ID Ancestry Panel) and ancestry inference were further performed. Sequencing performance demonstrated that the Precision ID Ancestry Panel is effective and robust. Forensic characteristics suggested that this panel not only can be used for ancestry estimation of Tibeto-Burman populations but also for individual identification. Tibetan and Yi shared a common genetic ancestry origin but experienced the complex history of gene flow, local adaptation, and isolation, and constructed the specific genetic landscape of human genetic diversity of Highlander and Lowlander populations. Tibetan-Burman populations and other East Asian populations showed sufficient genetic difference and could be distinguished into three distinct groups. Furthermore, analysis of population structure revealed that significant genetic difference was existed inter-continent populations and strong genetic affinity was observed within-continent populations. Additional population-specific AISNPs and a relatively more comprehensive database with sufficient reference population data remain necessary to get better-scale resolution within a geographically proximate populations in East Asia.

No longer locally extinct? Tracing the origins of a lion (Panthera leo) living in Gabon

Lions (Panthera leo) are of particular conservation concern due to evidence of recent, widespread population declines in what has hitherto been seen as a common species, robust to anthropogenic disturbance. Here we use non-invasive methods to recover complete mitochondrial genomes from single hair samples collected in the field in order to explore the identity of the Gabonese Plateaux Batéké lion. Comparison of the mitogenomes against a comprehensive dataset of African lion sequences that includes relevant geographically proximate lion populations from both contemporary and ancient sources, enabled us to identify the Plateaux Batéké lion as a close maternal relative to now extirpated populations found in Gabon and nearby Congo during the twentieth century, and to extant populations of Southern Africa. Our study demonstrates the relevance of ancient DNA methods to field conservation work, and the ability of trace field samples to provide copious genetic information about free-ranging animals.

Hierarchical genetic structure of native masu salmon populations in Hokkaido, Japan

Identification of the spatial extent of genetic structuring that may be influenced by evolutionary, ecological and historical factors is critical for effective conservation or management strategies. Masu salmon Oncorhynchus masou is commonly distributed in Far East, however, many local populations have been under threats of decline due to habitat destruction, overexploitation, and genetic introgression. To reveal the spatial genetic structure of native masu salmon populations in Hokkaido, masu salmon samples were collected from 16 rivers in which there was no official record of artificial releases of any masu salmon stock and were analyzed using 15 microsatellite loci. A Bayesian assignment test revealed that masu salmon populations were divided into two genetically distinct groups: the northeastern and southwestern groups. For within-group genetic structure, all populations, except for geographically proximate populations, were significantly different from each other. AMOVA revealed that genetic variation at among-group level based on groups identified assignment test was greater than that of groups based on geographic locations. There was no significant IBD for the 16 populations. However, the Mantel test revealed significant IBD for the northeastern group, but did not for the southwestern group. This study suggested that native masu salmon populations in Hokkaido exhibit a hierarchical genetic structure that is largely a result of their precise homing behavior. The results of this study also highlight the importance of defining populations by using genetic data rather than by using predefined populations based on geographic locations for the correct determination of genetic structure.

Temporal variability in offspring quality and individual reproductive output in a broadcast-spawning marine fish

AbstractThe protracted spawning period of broadcast-spawning marine fishes has potential to generate considerable variability in metrics of individual reproductive output. We undertook a temporally detailed genetic study of larvae produced by Atlantic cod (Gadus morhua) from two spatially proximate populations spawning under controlled semi-natural conditions over 94 days. Based on daily samples of larvae (n = 4489 in total), we document fine-scaled temporal changes in, and correlates of, offspring phenotype and reproductive output (egg batches produced or fertilized). Larval length and standardized yolk-sac volume declined 11 and 49% over the spawning period, respectively. The adaptive significance of these trends is unclear. Longer, heavier females produced longer, better-provisioned larvae. Body size affected the number of egg batches to which an individual contributed genetically but not spawning duration. Males contributed gametes to a greater number of egg batches (19.5 vs. 9.2), and spawned over a longer period of time (48.9 vs. 30.8 days), than females. After accounting for body size and condition, egg batch number and spawning duration differed between adjacent populations separated by &amp;lt; 10 km. Our work highlights the need to understand the environmental and adaptive causes of temporal variability in offspring quality and its consequences to individual fitness and per capita population growth in batch-spawning fishes.

Genetic structure of muskellunge in the Great Lakes region and the effects of supplementation on genetic integrity of wild populations

Abstract Muskellunge ( Esox masquinongy ) are important apex predators that support numerous recreational fisheries throughout the Great Lakes region. Declines in muskellunge abundance from historical overharvest and environmental degradation have threatened the viability of many populations and prompted significant restoration efforts that often include stocking. The goal of our study was to investigate contemporary population structure and genetic diversity in 42 populations of muskellunge sampled across the Great Lakes region to inform future management and supplementation practices. We genotyped 1896 muskellunge ( N = 10–123/population) at 13 microsatellite loci. The greatest genetic variation was between populations of Great Lakes origin and populations of Northern (inland) origin, with both groups also exhibiting significant substructure (overall F ST = 0.23). Genetic structure was generally correlated with geography; however, we only found marginal evidence of isolation by distance, likely due to high genetic differentiation among proximate populations. Measures of genetic diversity were moderate across most populations, but some populations displayed low diversity consistent with small population sizes or historical bottlenecks. Many of the populations studied displayed evidence of historic introductions and supplemental stocking, including the presence of individuals with primarily non-native ancestry as well as interlineage hybrids. Our results suggest that the historic population structure of muskellunge is largely intact across the Great Lakes region, but also that stocking practices have altered this structure to some degree. We suggest that future supplementation practices use local sources where possible, and incorporate genetic tools including broodstock screening to ensure that non-native muskellunge are not used to supplement wild populations.

Typing of two Middle Eastern populations with the Precision ID Ancestry Panel

Ancestry informative markers have a great potential for ancestry inference in forensic genetic casework. However, applying ancestry inference in casework requires sufficient allele frequency data on as many populations as possible to allow the determination of biogeographical origin. Therefore, Turkish and Iranian individuals were SNP typed with Massively Parallel Sequencing with the Precision ID Ancestry Panel (Thermo Fisher Scientific) to assess whether it was possible to differentiate geographically proximate populations in the Middle East using this kit. Analyses showed that it were not possible to separate the two populations and neither was it possible to separate them from European and South-Central Asian populations. The two Middle Eastern populations were highly admixed with components from both Europe and South-Central Asia. Thus, it is important to identify genetic markers that are characteristic of the various Middle Eastern populations.

Diet comparison between rainforest and cave populations of Craugastor alfredi (Anura: Craugastoridae): does diet vary in contrasting habitats?

ABSTRACTInformation about interpopulational variation of diet is important for thoroughly understanding the ecological niche of a species, the possible attributes that have allowed it to live in different habitats and ecosystems (if it is the case) and the degree of dietary specialization. This study compared dietary composition and diversity, size of prey consumed and feeding intensity between two geographically proximate populations of Craugastor alfredi, inhabiting contrasting habitats: one located in a remnant tropical rainforest and the other population located within a cave entrance, in eastern Mexico. A total of 118 frogs (50 from rainforest and 68 from cave) were stomach-flushed and, from those, 86 had at least one prey item (42 from rainforest and 44 from cave). Consumption proportions of orthopterans differed between habitats, with frogs from the cave having higher importance values of this prey than frogs from the rainforest. Additionally, both dietary diversity and feeding intensity were higher in the rainforest population. It was concluded that the generalized diet of C. alfredi, besides the high consumption of orthopterans by the cave population, may have contributed to its success in cave entrances. Nonetheless, other non-feeding attributes like small body size, direct development and semiarboreality may also facilitate the use of rock crevices in caves for foraging and reproduction.

The Time of Origin and Genetic Diversity of Three Isolated Kokanee Populations in Southwest Alaska

AbstractWe examined the time of origin and genetic diversity of native kokanee, the nonanadromous ecotype of Sockeye Salmon Oncorhynchus nerka, from three isolated lakes in the Katmai National Park and Preserve in southwest Alaska. These kokanee evolved independently from Sockeye Salmon when migration barriers arose, blocking ocean access. We used information about the relative age of each barrier to hypothesize the relative time of origin for kokanee in each lake. In addition, we used data from 13 microsatellite loci to test our time of origin hypotheses and assess genetic diversity of kokanee from these three lakes and proximate Sockeye Salmon populations. Coalescent‐based estimates of the time of origin for kokanee in Jo‐Jo Lake (170 years before present [ybp]) and Devil's Cove Lake (6,583 ybp) were consistent with the relative age of barriers isolating each lake. However, data from Dakavak Lake (1,379 ybp) suggested that the barrier was older than hypothesized. Indices of intrapopulation diversity were lower for kokanee than for Sockeye Salmon. Estimates for kokanee population divergence (RST; the FST analog for microsatellites) among the three lakes were consistent with time of origin estimates. Furthermore, the most recently isolated kokanee (Jo‐Jo Lake population) were most closely related to neighboring Sockeye Salmon. Only the kokanee from Jo‐Jo Lake exhibited a relatively low historical effective population size (Ne ≈ 107) and evidence of a genetic bottleneck. Taken together, the results of this study show that although rare, kokanee in Alaska are not ephemeral and can persist in isolation for hundreds of generations despite the colder temperatures and shorter growing season, that are thought to limit their sustainability in Alaska.

Out crosses between seasonally different segments of a Pacific salmon population reveal local adaptation

In salmon populations, local adaptation to seasonally varying incubation temperature is characterized by temperature-adjusted development times [measured in degree days – accumulated temperature units (ATUs)] that differ between control and F1 hybrid crosses that were made between temporally separated population segments, a contrast not expected in a panmictic population. We examined adaptation of embryo development time to seasonally cooling temperature in a population of pink salmon by estimating genetic components of variation in control and hybrid F1 crosses made between members of early- and late-spawning subpopulations, and replicated our observations in independent odd- and even-year brood lines. In each brood line, both sire and dam components of variation of development time were significant and accounted for a substantially larger portion of variation than their interactions, which suggested that natural selection has acted primarily on additive genetic variation. The implications of these results are that (1) spatially or temporally proximate salmon populations may be structured by distinct adaptations; (2) artificial relaxation of local geneflow barriers may lead to depression of fitness; and (3) populations of salmon genetically structured by local adaptation may carry variation that enhances their persistence during rapid climate change.

Declining patterns of Pacific Northwest steelhead trout (Oncorhynchus mykiss) adult abundance and smolt survival in the ocean

Examination of population abundance and survival trends over space and time can guide management and conservation actions with information about the spatial and temporal scale of factors affecting them. Here, we analyzed steelhead trout (anadromous Oncorhynchus mykiss) adult abundance time series from 35 coastal British Columbia and Washington populations along with smolt-to-adult return (smolt survival) time series from 48 populations from Washington, Oregon, and the Keogh River in British Columbia. Over 80% of the populations have declined in abundance since 1980. A multivariate autoregressive state-space model revealed smolt survival four groupings: Washington and Oregon coast, lower Columbia River, Strait of Juan de Fuca, and Puget Sound – Keogh River populations. Declines in smolt survival rates were seen for three of the four groupings. Puget Sound and Keogh River populations have experienced low rates since the early 1990s. Correlations between population pairs’ time series and distance apart illustrated that smolt survival rates were more positively correlated for proximate populations, suggesting that important processes, including those related to ocean survival, occur early in the marine life of steelhead.

Speciation history of a species complex of Primulina eburnea (Gesneriaceae) from limestone karsts of southern China, a biodiversity hot spot.

Limestone karsts in southern China are characterized by high edaphic and topographic heterogeneity and host high levels of species richness and endemism. However, the evolutionary mechanisms for generating such biodiversity remain poorly understood. Here, we performed species delimitation, population genetic analyses, simulations of gene flow and analyses of floral morphological traits to infer the geographic history of speciation in a species complex of Primulina eburnea from limestone karsts of southern China. Using Bayesian species delimitation, we determined that there are seven distinct species that correspond well to the putative morphological species. Species tree reconstruction, Structure and Neighbor‐Net analyses all recovered four lineages in agreement with currently species geographic boundaries. High levels of genetic differentiation were observed both within and among species. Isolation–migration coalescent analysis provides evidence for significant but low gene flow among species. Approximate Bayesian computation (ABC) analysis supports a scenario of historical gene flow rather than recent contemporary gene flow for most species divergences. Finally, we found no evidence of divergent selection contributing to population differentiation of a suite of flower traits. These results support the prevalence of allopatric speciation and highlight the role of geographic isolation in the diversification process. At small geographic scales, limited hybridization occurred in the past between proximate populations but did not eliminate species boundaries. We conclude that limited gene flow might have been the predominant evolutionary force in promoting population differentiation and speciation.

Salish Sea Chinook salmon exhibit weaker coherence in early marine survival trends than coastal populations

AbstractIdentifying factors that influence anadromous Pacific salmon (Oncorhynchus spp.) population dynamics is complicated by their diverse life histories and large geographic range. Over the last several decades, Chinook salmon (O. tshawytscha) populations from coastal areas and the Salish Sea have exhibited substantial variability in abundance. In some cases, populations within the Salish Sea have experienced persistent declines that have not rebounded. We analyzed a time series of early marine survival from 36 hatchery Chinook salmon populations spanning ocean entry years 1980–2008 to quantify spatial and temporal coherence in survival. Overall, we observed higher inter‐population variability in survival for Salish Sea populations than non‐Salish Sea populations. Annual survival patterns of Salish Sea populations covaried over smaller spatial scales and exhibited less synchrony among proximate populations relative to non‐Salish Sea populations. These results were supported by multivariate autoregressive state space (MARSS) models which predominantly identified region‐scale differences in survival trends between northern coastal, southern coastal, Strait of Georgia, and Puget Sound population groupings. Furthermore, Dynamic Factor Analysis (DFA) of regional survival trends showed that survival of southern coastal populations was associated with the North Pacific Gyre Oscillation, a large‐scale ocean circulation pattern, whereas survival of Salish Sea populations was not. In summary, this study demonstrates that survival patterns in Chinook salmon are likely determined by a complex hierarchy of processes operating across a broad range in spatial and temporal scales, presenting challenges to the management of mixed‐stock fisheries.

Light Rail Leads to More Walking Around Station Areas.

Areas around Light Rail Transit (LRT) stations offer ideal conditions for Transit-Oriented Development (TOD). Relatively dense, mixed-use neighborhoods can have positive impacts on mobility, health, and perceptions of neighborhood safety among nearby residents, primarily through walking activity for both transit and other purposes. To examine how station areas may attract new activity, this study analyzed changes in walking around station areas among people living close to an LRT station before and after the opening of a new transit system. This study examined walking behavior among the subset of 214 participants living within one mile of one of 13 LRT stations from among a sample of residents living close or further away from a new LRT line in Seattle. They completed a survey and a travel log and wore an accelerometer and a GPS for 7 days both before (2008) and after the opening of the Seattle area LRT (2010). Walking bouts were derived using a previously developed algorithm. The main outcome was the individual-level change in the proportion of daily walking within one quarter Euclidean mile of an LRT station. Overall walking decreased from before to after the LRT opening while station area walking did not change significantly, indicating a shift in walking activity to the station areas after the introduction of LRT. Increases in the proportion of station area walking were negatively related to participants' distance between home and the nearest LRT station, peaking at <0.25 mile and decaying beyond >0.75 mile. Male gender, college education, normal weight status, less access to cars, and frequent LRT use were also significantly associated with greater positive changes in the proportion of station area walking. The shift in walking to station areas after the completion of light rail provides evidence that the local proximate population is attracted to station areas, which may potentially benefit both transit use and TOD area economic activity. The residential catchment area for the shift in LRT area walking was < 0.75 mile of the LRT stations.

Ethnic variation in medical and lifestyle risk factors for B cell non-Hodgkin lymphoma: A case-control study among Israelis and Palestinians.

BackgroundRisk factors for B-cell non-Hodgkin lymphoma (B-NHL) have not been assessed among Palestinian Arabs (PA) and Israeli Jews (IJ).MethodsIn a case-control study we investigated self-reported medical and lifestyle exposures, reporting odds ratios (ORs) and 95% confidence intervals [CIs], by ethnicity, for overall B-NHL and subtypes.ResultsWe recruited 823 cases and 808 healthy controls. Among 307 PA/516 IJ B-NHL cases (mean age at diagnosis = 51 [±17] versus 60 [±15] years, respectively) subtype distributions differed, with diffuse large B-cell lymphoma (DLBCL) being prominent among PA (71%) compared to IJ (41%); follicular lymphoma (FL), was observed in 14% versus 28%, and marginal zone lymphoma, in 2% versus 14%, respectively. Overall B-NHL in both populations was associated with recreational sun exposure OR = 1.43 [CI:1.07–1.91], black hair-dye use OR = 1.70 [CI:1.00–2.87], hospitalization for infection OR = 1.68 [CI:1.34–2.11], and first-degree relative with hematopoietic cancer, OR = 1.69 [CI:1.16–2.48]. An inverse association was noted with alcohol use, OR = 0.46 [CI:0.34–0.62]. Subtype-specific exposures included smoking (FL, OR = 1.46 [CI:1.01–2.11]) and >monthly indoor pesticide use (DLBCL, OR = 2.01 [CI:1.35–3.00]). Associations observed for overall B-NHL in PA only included: gardening OR = 1.93 [CI:1.39–2.70]; history of herpes, mononucleosis, rubella, blood transfusion (OR>2.5, P<0.01 for all); while for IJ risk factors included growing fruits and vegetables, OR = 1.87 [CI:1.11–3.15]; and self-reported autoimmune diseases, OR = 1.99 [CI:1.34–2.95].ConclusionsIn these geographically proximate populations we found some unique risk factors for B-NHL. Heterogeneity in the observed associations by ethnicity could reflect differences in lifestyle, medical systems, and reporting patterns, while variations by histology infer specific etiologic factors for lymphoma subtypes.