Integrating photovoltaic power stations into large-capacity hydropower stations is an efficient and promising method for regulating large-scale photovoltaic power generation. However, constrained by the time step length, traditional long-term scheduling of hydro-PV hybrid systems does not adequately consider short-term operational performance indicators, resulting in sub-optimal scheduling plans that fail to coordinate the consumption of photovoltaic power and the utilization of water resources in the basin. To address this, this study established a long-term optimal scheduling model for hydro-PV hybrid systems. This model overcomes the limitation of the time step length in long-term scheduling by incorporating long-term power generation goals and short-term operation performance targets into the long-term optimal scheduling process based on scheduling auxiliary functions. In case studies, the optimised model balanced the long-term power-generation goals and short-term operational performance targets by redistributing energy across different periods. Compared to optimization models that did not consider short-term operation performance, in a typical normal year, the model effectively reduced the electricity curtailment volume (28.54%) and power shortage volume (10.91%) of the hybrid system while increasing on-grid electricity (0.03%). Similar improvements were observed in wet and dry years. These findings provide decision support for hydropower scheduling in the context of large-scale photovoltaic power integration.