AbstractArtificial intelligence has become an essential part of the daily lives and has revolutionized various sectors, including healthcare, finance, transportation, and entertainment. With a substantial increase in processed data, neuromorphic devices that replicate the operation of the human brain have been emphasized owing to their superior efficiency. Typical neuromorphic devices focus on constructing synapse‐like structures. However, biological synapses have more complex mechanisms for efficient data processing. One of the most prominent mechanisms is proton activation, which forms an ion concentration gradient prior to the transmission of neurotransmitters and plays a key role in efficient computation. In this study, proton‐mediated signaling at biological synapses is successfully replicated by fabricating a proton‐modulated memristor device using a tyrosine‐rich peptide film. The ionic input of the memristor is controlled by applying a voltage to proton‐permeable PdHx contacts in a hydrogen atmosphere, thus successfully adjusting the resistive switching behavior. Remarkable improvements in resistive switching and computing performance are observed through proton injection, analogous to “proton‐mediated signaling” at the actual synapse. It is believed that this study proposes a new paradigm for designing biorealistic devices and provides inspiration for precisely controllable ion‐based neuromorphic devices.