Simple SummaryThe long-whiskered owlet (Xenoglaux loweryi) is threatened by human activities and is currently listed as vulnerable by the IUCN. Here, we geo-referenced long-whiskered owlet records, identified key environmental variables affecting their distribution, and predicted their current and future distribution (2050 and 2070) in the Amazonas and San Martin areas of northwestern Peru. Under current conditions, areas with “high”, “moderate”, and “low” probability for the distribution of X. loweryi cover about 0.16% (140.85 km2), 0.46% (416.88 km2), and 1.16% (1048.79 km2) of the study area, respectively. Moreover, under future conditions, the “high”, “moderate”, and “low” probability areas showed profits and losses in terms of habitat suitability. Importantly, the natural protected areas in Amazonas and San Martin, both in current and in the future conditions, do not cover most of the pivotal habitats for X. loweryi. Furthermore, it was evident that the combination of climate change and anthropogenic activities will lead to further habitat loss for this species. Therefore, to effectively conserve this species over time, it is strongly recommended that areas with “high” (and even “moderate”) probability and the main ecosystems that this species inhabits be designated as priority areas for research and conservation (including in natural protected areas).The IUCN has listed the long-whiskered owlet (Xenoglaux loweryi) as vulnerable due to the presence of few geographic records, its restricted range, and anthropogenic threats. Its natural history and ecology are largely unknown, and its distribution is widely debated; therefore, there is an urgent need for the real-time conservation of X. loweryi. In this study, 66 geo-referenced records of X. loweryi, 18 environmental variables, and the maximum entropy model (MaxEnt) have been used to predict the current and future (2050 and 2070) potential distribution of X. loweryi in the Amazonas and San Martin regions of northwestern Peru. In fact, under current conditions, areas of “high”, “moderate”, and “low” potential habitat suitability cover 0.16% (140.85 km2), 0.46% (416.88 km2), and 1.16% (1048.79 km2) of the study area, respectively. Moreover, under future conditions, the “high”, “moderate”, and “low” probability areas present profits and losses in terms of habitat suitability. Based on the environmental variables, this species mostly inhabits areas with a forest fraction with presence of trees with an emergent tree canopy of ~10–30 metres and depends on Yunga montane forest habitats with high humidity but it is not dependent on bare cover area, crops, or grasslands. Nevertheless, most of the current and future distribution areas are not part of the protected natural areas of Amazonas and San Martin. Additionally, the combination of climate change and anthropogenic activities contribute to further losses of this species habitat. Therefore, from the management point of view, corrective and preventive actions will help to preserve this species over time.