Increasing the overall performance of Si-based anodes is still challenging because of the influence of various parameters involved in the preparation processes. This study addresses this challenge by employing the design of experiment technique to assess the impact of ball milling parameters such as milling speed, time, ball to powder and medium to powder ratio on the properties of silicon/graphite (Si/Gr) powders, with a focus on their electrochemical performance. Si/Gr powders in 20:80 weight ratio and 4 factor - 2 level full factorial design were used to find the main effects and interactions. Crystallite sizes were calculated using the Scherrer equation, and span values were obtained from the particle size distribution (PSD) analysis. SEM analyses were carried out to check the microstructure of powders. Ultimately, regression equations were created with high adjusted R2 values for crystallite size (93%), contamination (92%), and span (91%), respectively. Optimization experiments were carried out using the created regression equations, and the models were verified. It was found that crystallite size obtained by XRD data is more reliable to assess powder properties on the performance instead of PSD because of the agglomeration at the particle level throughout the milling. Further milling experiments were performed to elaborate the role of oxygen content and crystallite size. Results showed that while initial capacity is strongly related to total oxygen content, decay in the first cycles is correlated to the crystallite size of the silicon powder.