Accurate measurement of the activity size distribution of radon progeny is of importance for dose evaluation. To meet the increasing demand for field survey in China, a new measurement system consisting of 8 stages wire screen diffusion battery was developed, by which the unattached fraction, the fraction of particles larger than 2.5 μm, the activity size distribution and the activity concentration of each radon progeny could be measured simultaneously. To verify the activity size distribution measurement results of the new measurement system, a series of comparison experiments were carried out with an indirect measurement method in radon chamber and indoor environment. The results in radon chamber exhibited a good consistency between the two methods in activity size ranging from 73 nm to 297 nm with an average deviation of −1%, but the result measured by the new system was smaller at 551 nm due to the loss of large particles during the sampling process. Comparison results in indoors mostly showed a good agreement as the deviations were less than 10%, and some large deviations were also observed, which was mainly on account of the limitation of sensitivity and measurement uncertainty.