F1 Progeny Research Articles

A locus-dependent mixed inheritance in the segmental allohexaploid sweetpotato (Ipomoea batatas [L.] Lam).

Two interrelated aspects of the sweetpotato genome, its polyploid origin and inheritance type, remain uncertain. We recently proposed a segmental allohexaploid sweetpotato and thus sought to clarify its inheritance type by direct analyses of homoeolog segregations at selected single-copy loci. For such analyses, we developed a digital quantitative PCR genotyping method using one nondiscriminatory and three discriminatory probes for each selected locus to discriminate and quantify three homoeolog-differentiating variation types (homoeolog-types) in genomic DNA samples for genotype fitting and constructed a F2 population for segregation analyses. We confirmed inter-subgenomic distinctions of three identified homoeolog-types at each of five selected loci by their interspecific differentiations among 14 species in Ipomoea section batatas and genotyped the loci in 549 F2 lines, selected F1 progenies, and their founding parents. Segregation and genotype analyses revealed a locus-dependent mixed inheritance (disomic, polysomic, and intermediate types) of the homoeolog-types at 4 loci in the F2 population, displaying estimated disomic-inheritance frequencies of 0, 2.72%, 14.52%, and 36.92%, and probably in the F1 population too. There were also low-frequency non-hexaploid F1 and F2 genotypes that were probably derived from double-reduction recombination or partially unreduced gametes, and F2 genotypes of apparent aneuploids/dysploids with neopolyploid-like frequencies. Additional analyses of homoeolog-type genotypes at the 5 loci in 46 lines from various regions revealed locus-dependent selection biases, favoring genotypes having more of one homoeolog-type, i.e. more of di- or homogenized homoeolog-type composition, and one-direction ploidy trending among apparent aneuploids/dysploids. These inheritance features pointed to an evolving segmental allohexaploid sweetpotato impacted by selection biases.

The chloroplast genome inheritance pattern of the Deli-Nigerian prospection material (NPM) × Yangambi population of Elaeis guineensis Jacq.

The chloroplast genome has the potential to be genetically engineered to enhance the agronomic value of major crops. As a crop plant with major economic value, it is important to understand every aspect of the genetic inheritance pattern among Elaeis guineensis individuals to ensure the traceability of agronomic traits. Two parental E. guineensis individuals and 23 of their F1 progenies were collected and sequenced using the next-generation sequencing (NGS) technique on the Illumina platform. Chloroplast genomes were assembled de novo from the cleaned raw reads and aligned to check for variations. The sequences were compared and analyzed with programming language scripting and relevant bioinformatic softwares. Simple sequence repeat (SSR) loci were determined from the chloroplast genome. The chloroplast genome assembly resulted in 156,983 bp, 156,988 bp, 156,982 bp, and 156,984 bp. The gene content and arrangements were consistent with the reference genome published in the GenBank database. Seventy-eight SSRs were detected in the chloroplast genome, with most located in the intergenic spacer region.The chloroplast genomes of 17 F1 progenies were exact copies of the maternal parent, while six individuals showed a single variation in the sequence. Despite the significant variation displayed by the male parent, all the nucleotide variations were synonymous. This study show highly conserve gene content and sequence in Elaeis guineensis chloroplast genomes. Maternal inheritance of chloroplast genome among F1 progenies are robust with a low possibility of mutations over generations. The findings in this study can enlighten inheritance pattern of Elaeis guineensis chloroplast genome especially among crops' scientists who consider using chloroplast genome for agronomic trait modifications.

Random mutations induced by a sub-sterilizing dose of gamma ray on Aedes albopictus male pupae and transmission to progeny

The application of the Sterile Insect Technique (SIT) to mosquito control is based on the systematic release of large numbers of adult males that have been previously sterilized by irradiation. Ionizing radiation doses inducing full sterility also cause somatic damages that reduce the capacity of the treated males to compete with wild males. The optimal dose inducing high levels of male sterility and minimal impact on competitiveness can be assessed by establishing a dose-response curve. Sub-sterile males are, to a variable degree, still fertile and might be able to transmit to the progeny and following generation(s) sub-lethal random mutations resulting from irradiation. To investigate this, we treated Ae. albopictus male pupae with a sub-sterilizing (2–4 % of egg hatching) dose of gamma rays and explored expressed mutated genes in treated males and their progeny using RNA-seq. Single nucleotide polymorphisms (SNPs) were called using two independent pipelines. Only SNPs common to both pipelines (less than 5 % of the total SNPs predicted) were considered reliable and were annotated to genes. Over 600 genes with mutations likely induced by irradiation were found in the treated Ae. albopictus males. A part of the genes found mutated in irradiated males were also found in (and therefore probably passed on to) males of the F1 and F2 progeny, indicating that genetic variations induced by irradiation may be transmitted along generations. The mutated genes in irradiated males did not seem to significantly affect biological processes, except in one case (i.e., oxidative phosphorylation). Only in four cases (i.e., oxidative phosphorylation, UDP-glucose metabolic process, proton transmembrane transport and riboflavin metabolism) we found biological processes to be significantly affected by mutated genes that were likely transmitted to the male progeny. Our results suggest that random mutations induced by a sub-sterilizing dose of gamma ray in Ae. albopictus male pupae and transmitted to the male progeny of the irradiated mosquitoes do not affect biological processes potentially harmful, from a public-health point of view.

Assessment of Transgressive Segregants for Yield and its Component Traits in French Bean (Phaseolus vulgaris L.)

Background: Extreme phenotypes carried on by transgressive segregation are, moreover, heritably stable in contrast to heterosis. It has been hypothesized that the development of extreme or “transgressive” traits in segregating hybrid populations assists in the adaptive divergence of hybrid taxa. The investigation on French bean was experimented to evaluate transgressive segregants generated in the F2 generation for yield and related traits. Methods: The present study on French bean was conducted during rabi 2019 to 2022 to elicit data on transgressive segregants produced for yield and related traits in F2 generation. Fertile F1 hybrids were developed from three crosses: IC 632961 × Arka Sukomal, IC 632961 × Arka Arjun and Arka Arjun × IC 63296. Heterosis was estimated for yield and related traits in these hybrids. The F2 progeny were evaluated in open field condition. Mean, standard deviation and percentage of transgressive segregants were estimated for quantitative traits under investigation. Result: Transgressive segregants were observed in all three crosses, with the highest number of transgressive segregants for yield traits found in the progeny of the cross IC 632961 × Arka Sukomal. The identification and isolation of such transgressive segregants indicate that the parents possess favourable alleles and genes governing the traits of interest, which can be consolidated into a single or a few genotypes through stringent selection. Superior and desirable transgressive segregants were observed for all sixteen yield and its component traits, except for leaf length, in the two cross combinations Arka Arjun × IC 632961 and IC 632961 × Arka Arjun. The highest percentage of transgressive segregation was observed for the number of inflorescences per plant (79.49%), followed by the number of pods per plant (78.46%) and pod yield per plant (75.61%) in the F2 generation.

Development of a sterile insect technique as a control strategy for the Asian citrus psyllid: establishing the effect of sterilizing X-rays on fecundity, fertility, and survival.

The Asian citrus psyllid (ACP), Diaphorina citri Kuwayama (Hemiptera: Psyllidae), is a major pest of citrus due to its role as the vector of the bacterium that causes huanglongbing. In commercial citrus, ACP control currently relies on the application of insecticides, which may not be sustainable long-term, nor practical in urban areas. The sterile insect technique (SIT) is an alternative strategy in which large numbers of pests are reared, sterilized using radiation, and then released into the field to compete with wild individuals for matings, suppressing population growth. As a fundamental step toward the development of SIT for ACP, this study sought to identify the optimum radiation dose required to sterilize ACP without affecting their survival and mating capacity. Virgin adult ACP of both sexes were subjected to doses of X-ray irradiation ranging from 40 to 480 Gy, then paired with a nonirradiated mate and allowed to produce offspring. Fecundity was estimated as the number of eggs laid, and fertility as the proportion of those eggs that hatched. Females were more radio-sensitive than males, exhibiting a major drop in fecundity at even the lowest dose and 100% sterility at 80 Gy. In contrast, a fivefold higher dose (400 Gy) did not achieve complete sterility in males, with around 5% offspring survival. However, F1 progeny of males exposed to 320 Gy or higher were subsequently found to be 100% sterile. This confirmation of inherited sterility suggests that balancing the sterilizing effects of radiation against its mortality-inducing effects may warrant further evaluation.

Identification of Transgressive Segregation for Yield and Resistance to Yellow Stem Borer (Scirpophaga incertulas Walker) in F2 Segregating Generation of Six Rice Crosses (Oryza sativa L.)

The research investigation on the occurrence of transgressive segregation in F2 populations derived from six rice crosses namely: ADT 43 X TKM 6, ADT 43 X ASD 12, ADT 45 X TKM 6, ADT 45 X ASD 12, ASD 16 X TKM 6 and ASD 16 X ASD 12 with the aim of identifying superior genotypes for yield and resistance to the yellow stem borer (Scirpophaga incertulas). This research was conducted through series of field observations for transgressive segregants at Plant Breeding Farm, Department of Genetics and Plant Breeding, Faculty of Agriculture, Annamalai University during Kharif season of 2022. The crosses involved high-yielding but susceptible female parents (ADT 43, ADT 45, ASD 16) and YSB resistant but low yielding male parents (TKM 6, ASD 12). In the F2 generation, a wide range of phenotypes was observed for yield-related traits and YSB resistance. Twelve superior transgressive segregants were identified in each cross, exhibiting increased grain yield per plant, number of productive tillers, and number of grains per panicle, coupled with high levels of resistance to YSB. The results suggest that the parents carried different alleles and genes governing yield and its component traits, allowing the accumulation of favorable alleles in the F2 progeny through recombination. The identification of these high-performing transgressive segregants provides opportunities for further evaluation and potential use in rice breeding programs to develop improved cultivars with enhanced yield and biotic stress resistance.

CRISPR/Cas9-generated mutations in a sugar transporter gene reduce cassava susceptibility to bacterial blight.

Bacteria from the genus Xanthomonas are prolific phytopathogens that elicit disease in over 400 plant species. Xanthomonads carry a repertoire of specialized proteins called transcription activator-like (TAL) effectors that promote disease and pathogen virulence by inducing the expression of host susceptibility (S) genes. Xanthomonas phaseoli pv. manihotis (Xpm) causes bacterial blight on the staple food crop cassava (Manihot esculenta Crantz). The Xpm effector TAL20 induces ectopic expression of the S gene Manihot esculenta Sugars Will Eventually be Exported Transporter 10a (MeSWEET10a), which encodes a sugar transporter that contributes to cassava bacterial blight (CBB) susceptibility. We used CRISPR/Cas9 to generate multiple cassava lines with edits to the MeSWEET10a TAL20 effector binding site and/or coding sequence. In several of the regenerated lines, MeSWEET10a expression was no longer induced by Xpm, and in these cases, we observed reduced CBB disease symptoms post Xpm infection. Because MeSWEET10a is expressed in cassava flowers, we further characterized the reproductive capability of the MeSWEET10a promoter and coding sequence mutants. Lines were crossed to themselves and to wild-type plants. The results indicated that expression of MeSWEET10a in female, but not male, flowers is critical to produce viable F1 seed. In the case of promoter mutations that left the coding sequence intact, viable F1 progeny were recovered. Taken together, these results demonstrate that blocking MeSWEET10a induction is a viable strategy for decreasing cassava susceptibility to CBB and that ideal lines will contain promoter mutations that block TAL effector binding while leaving endogenous expression of MeSWEET10a unaltered.

Morphological variation of tail bone among two chicken breeds and their F1 progeny.

Fancy breeds of Japanese indigenous chicken display extensive morphological diversity, particularly in tail feathers. Although marked differences in tail and bone traits have been reported between Tosa-jidori (wild type) and Minohikichabo (rich type) breeds, little is known about the pattern of genetic inheritance in cross experiments. Therefore, this study aimed to investigate the strain and sex effects, and inheritance patterns, in the morphometric variation of pygostyle bones among Tosa-jidori, Minohikichabo, and their F1 hybrids. Five morphological traits, angle of the apex of the pygostyle, pygostyle length, margo cranialis length, tail feather number, and body weight, were evaluated at the adult stage. A significant strain difference was detected in all traits, whereas significant sex differences were observed in only three traits, but not in the angle of the apex of the pygostyle and tail feather number. In F1 hybrids, the angle of the apex of the pygostyle was significantly different to that of Tosa-jidori but not that of Minohikichabo, whereas the pygostyle length and tail number of F1 hybrids were significantly different from those of Minohikichabo but not those of Tosa-jidori. A significant heterosis effect was found in the margo cranialis length and body weight. All five traits showed nonadditive inheritance patterns but varied in each trait between partial dominance (angle of the apex of pygostyle), full dominance (pygostyle length and tail feather number), and over-dominance (margo cranialis length and body weight). Interestingly, different patterns of genetic inheritance in the F1 hybrid were observed at different locations, even within the same pygostyle bone. Using the Japanese indigenous chicken model, these results provide a substantial step toward understanding the genetic architecture of morphology in chickens.

Association Between Muscle Growth and Transcription of a Mutant MSTN Gene in Olive Flounder (Paralichthys olivaceus).

Myostatin (MSTN, also known as growth differentiation factor-8 (GDF-8)), a member of the transforming growth factor β (TGF-β) superfamily, functions as a negative regulator of skeletal muscle development and growth. However, it is also expressed in a wide range of tissues in fish and thus may have more diverse roles in this group than in mammals. In this study, we assessed the genome-wide transcriptional expression pattern associated with the CRISPR/Cas9-mutated MSTN gene in the olive flounder (Paralichthys olivaceus) in association with changes in cell proliferation and transportation processes. There were no differences in the hepatosomatic index, and the growth of male and female fish increased in the F1 progeny of the MSTN mutants. Furthermore, the histopathological analysis showed that myostatin editing resulted in a 41.24% increase in back muscle growth and 46.92% increase in belly muscle growth in male flounder compared with normal flounder, and a 16.01% increase in back muscle growth and 14.26% increase in belly muscle growth in female flounder compared with normal flounder. This study demonstrates that editing of the myostatin gene enhances muscle growth in olive flounder, with a notably more pronounced effect observed in males. Consequently, myostatin-edited male flounder could represent a valuable asset for the flounder aquaculture industry.

A Comprehensive study of wheat genotypes for combining ability and heritability in drought tolerance

A major challenge in wheat cultivation is the negative impact of water scarcity on growth and yield. Therefore, it is crucial to develop wheat varieties with both high productivity and resilience to drought stress to support food production and improve global food security. The study aims to identify general and specific combining abilities and to understand the genetic mechanisms responsible for key traits by employing half-diallel analysis. In the current study, a half-diallel set comprising 10 x 10 wheat genotypes was subjected to crosses in all feasible combinations, excluding reciprocals, under drought stress conditions. Significant mean squares were observed for both General Combining Ability (GCA) and Specific Combining Ability (SCA) components among the 10 parents and 45 F1 progenies across eleven traits. Assessment of variance components (s2g and s2s), narrow-sense heritability (Hn), broad-sense heritability (Hb) and the GCA/SCA ratio allowed for the determination of the relative contributions of additive and non-additive genetic components. High narrow-sense heritability was noted for traits such as days to 75 % flowering, spike length and biological yield, indicating their predominantly additive genetic control. Conversely, the remaining eight traits exhibited low narrow-sense heritability, suggesting their inheritance is primarily governed by non-additive genetic factors, thus indicating the potential benefits of heterosis breeding. Based on GCA effects, P5 demonstrated superior general combining ability across traits, except for biological yield. P1, P3, P8 and P9 exhibited better combining ability for grain yield per plant. Specific cross combinations including P7×P10, P3×P4 and P5×P6 displayed notable specific combining ability and could be leveraged to develop superior pure lines in subsequent breeding endeavors.

Genetic Enhancement of Blast and Bacterial Leaf Blight Resistance in Rice Variety CO 51 through Marker-Assisted Selection

The increased use of chemicals in rice farming poses significant issues regarding the emergence of pesticide/fungicide resistance and environmental sustainability concerns. This study was aimed at the genetic improvement of blast, bacterial leaf blight (BB) and gall midge resistance in a popular rice variety CO 51 which already harbours a blast resistance gene Pi54. Efforts were made to pyramid an additional blast resistance gene Pi9 along with two BB resistance genes (xa13 and Xa21) and two gall midge resistance genes (Gm1 and Gm4) into an elite rice variety CO 51 to enhance the resistance level to biotic stresses. The superior lines were selected using functional markers conferring resistance to blast (NBS4 and Pi54MAS linked to Pi9 and Pi54 genes, respectively) and BB [(xa13Prom (xa13) and pTA248 (Xa21)] and SSR markers linked to Gm1 (RM1328) and Gm4 (RM22550) for phenotypic screening and agronomic evaluation. The genotyping and phenotyping of F6 and BC2F6 progenies of CO 51 X 562-4, for agronomic traits and resistance to BB and blast, identified ten superior progenies in F6 and five superior progenies in BC2F6. The breeding lines harbouring both xa13+Xa21 exhibited high levels of resistance to BB (score ≤ 1 cm) and Pi9+Pi54 exhibited strong resistance to blast (score ≤ 2). Identified lines can be evaluated further for varietal improvement or utilised as genetic stocks in breeding programs.

Construction of a high-density genetic map based on large-scale marker development in Coix lacryma-jobi L. using specific-locus amplified fragment sequencing (slaf-seq)

Coix lacryma-jobi L. is one of the most economically and medicinally important corns. This study constructed a high-density genetic linkage map of C. lacryma-jobi based on a cross between the parents 'Qianyi No. 2' × 'Wenyi No. 2' and their F2 progeny through high-throughput sequencing and the construction of a specific-locus amplified fragment (SLAF) library. After pre-processing, 325.49 GB of raw data containing 1628 M reads were obtained. A total of 22,944 high-quality SLAFs were identified, among which 3952 SLAFs and 3646 polymorphic markers met the requirements for the construction of a genetic linkage map. The integrated map contained 3605 high-quality SLAFs, which were grouped into ten genetic linkage groups. The total length of the map was 1620.39 cM, with an average distance of 0.45 cM and an average of 360.5 markers per linkage group. This report presents the first high-density genetic map of C. lacryma-jobi. This map was constructed using an F2 population and SLAF-seq approach, which allows the development of a large number of polymorphic markers in a short period. These results provide a platform for precise gene/quantitative trait locus (QTL) mapping, map-based gene separation, and molecular breeding in C. lacryma-jobi. They also help identify a target gene for tracking, splitting quantitative traits, and estimating the phenotypic effects of each QTL for QTL mapping. They are of great significance for improving the efficiency of discovering and utilizing excellent gene resources of C. lacryma-jobi.

Drought tolerance improvement for grain yield of a modern rice variety based on morphological and physiological response

Growth of rice (Oryza sativa L.) is severely affected by drought stress, which leads to decreased rice production in rainfed ecosystems worldwide. Particularly, modern rice varieties are more susceptible to drought stress rather than traditional rice varieties. In the present study, a modern short-term rice variety, ADT37, abundantly cultivated in the Cauvery delta region of the southern part of India, was improved for grain yield by introducing qDTY1.1 through the conventional backcross method. Positive F1 progenies were identified using RM431 linked with qDTY1.1 in PCR amplification. In phenotypic selection, rice progenies with suitable plant height to avoid linkage drag as well as high degree of drought tolerance to manage the drought stress were selected and advanced through the backcrossing process up to the BC3 generation. Finally, two near isogenic lines with equal plant height to the recurrent parent and high degree of drought tolerance were selected. A positive effect of qDTY1.1 on plant height and fertile seeds was revealed. In the future, the selected superior near isogenic lines would be useful to rice researchers and farmers facing unexpected water crises. Moreover, the morphological marker associated with the performance of crops according to the intensity of stress will support climate resilient agriculture.

Trait‐dependent plasticity erodes rapidly with repeated intergenerational acclimation in an invasive agricultural pest

AbstractClimate change is associated with increased mean temperatures and amplitudes manifesting both acutely and chronically, triggering organism stress responses that confer fitness costs and/or benefits. The larger grain borer (LGB), Prostephanus truncatus (Horn) (Coleoptera: Bostrichidae) is an invasive postharvest agricultural pest. While host shift is its well‐known potential invasive mechanism, how repeated intergenerational stress environments may influence offspring phenotypes is largely unknown. We thus evaluated physiological and ecological performance of LGB following repeated intergenerational acute heat acclimation to insinuate its likely responses to projected increased bouts of heat stress associated with climate change. Parental colonies were acutely heat‐acclimated separately at 35°C and 38°C; 80% RH for 2 h in climate chambers and released onto sterilized maize grain at optimal conditions (32°C, 80% RH). The F1 progenies were, respectively, acclimated at the same conditions and incubated to F2 generation. We then evaluated physiological and ecological performance under optimal conditions across parental, F1 and F2 generations. Our results showed that plasticity was highly trait dependent, and that acclimation did not affect F1 and F2 critical thermal maxima, but did improve critical thermal minima. However, while acclimation improved heat knockdown time at F1, repeated acclimation significantly reduced heat knockdown times at F2, suggesting plasticity erosion with generational repeated acclimations. Acute acclimation negatively affected ecological performance of F1 generations although this was restored with repeated acclimation in F2 populations. Our results suggest that the LGB may inflict more economic damage with repeated heat stress due to generational adaptation to temperature stress. The results contribute to knowledge on pest forecasting modelling under changing climates and provides a framework for phytosanitary adjustments in heat treatment protocols for international grain trade.

Phytochemical screening and insecticidal activities of some medicinal plants against the maize weevil, Sitophilus zeamais (Motschulsky) (Coleoptera: Curculionidae)

This study emphasizes the phytochemical study of some locally available botanicals against maize weevils. Nine plant parts were collected from six plant species. The test plant powder (200 g) was suspended sequentially in 600 ml of petroleum ether, chloroform, acetone, methanol, and distilled water for 72 h with frequent agitation. Different concentrations of the crude extracts were applied to maize seeds at rates of 10 ml, 15 ml and 20 ml per 100 g. All treatments with different extracts at different rates of application showed significant differences (p < 0.05) in the cumulative mean percentage mortality of the maize weevil. The seed extract of Maesa lanceolata and Croton macrostachyus and the leaf extract of Clausena anisata showed cumulative percent mortality ranged 95.32–98.02% in 28 days after treatment application. There was no significant difference (p > 0.05) among all treatments for the prevention of F1 progeny emergence. In all extracts, Clausena anisata showed 100% inhibition of F1 progeny emergence. All treatments significantly reduced seed weight loss and damage. The treated maize seeds were germinated with an acceptable germination quality. In conclusion, an increased dosage of the extract resulted in significant mortality in maize weevils. The seed extracts of Maesa lanceolata and Croton macrostachyus and Clausena anisata leaf extract were observed to be the most promising botanical in protecting stored maize against maize weevil.

Predicted impact, establishment and distribution of Heikertingerella sp. (Coleoptera, Chrysomelidae), recently released for the biological control of Tecoma stans in South Africa

Abstract Biological control practitioners are required to demonstrate that candidate agents are not only safe for release, but will establish widely in their new range with a significant impact on the target weed. We conducted this study in quarantine to provide insight into the impact and distribution of the root‐feeding flea beetle Heikertingerella sp. (Chrysomelidae), released in early 2023 against the invasive tree Tecoma stans (L.) (Bignoniaceae) in South Africa. We studied the effects of low and high beetle densities on plant growth and biomass, and F1 progeny production by the beetle. There were significant reductions in plant growth and biomass accumulation in the beetle‐exposed plants, relative to the controls. P1 adults damaged significantly more leaflets, with significantly higher F1 progeny production, at high beetle densities. The MaxEnt model predictions suggested that most of South Africa is climatically highly suitable for Heikertingerella sp., particularly along the southern and eastern coasts where the weed is most prevalent. Only the inland regions of the Northern Cape Province, depicting the driest and hottest part of the country where the weed does not occur, were predicted to be unsuitable for Heikertingerella sp. The beetle's thermal physiology, as determined by its critical thermal minimum and maximum temperatures and lower and upper lethal temperatures (LT50), suggests tolerance to temperature extremes in at least four of the eight provinces that fall within the range of T. stans in South Africa. Our results further justify the release of Heikertingerella sp. in areas predicted as suitable in South Africa.

Comparative transcriptome analysis provides molecular insights into heterosis of waterlogging tolerance in Chrysanthemum indicum

BackgroundHeterosis breeding is one of the most important breeding methods for chrysanthemum. To date, the genetic mechanisms of heterosis for waterlogging tolerance in chrysanthemum are still unclear. This study aims to analyze the expression profiles and potential heterosis-related genes of two hybrid lines and their parents with extreme differences in waterlogging tolerance under control and waterlogging stress conditions by RNA-seq.ResultsA population of 140 F1 progeny derived from Chrysanthemum indicum (Nanchang) (waterlogging-tolerant) and Chrysanthemum indicum (Nanjing) (waterlogging-sensitive) was used to characterize the extent of genetic variation in terms of seven waterlogging tolerance-related traits across two years. Lines 98 and 95, respectively displaying positive and negative overdominance heterosis for the waterlogging tolerance traits together with their parents under control and waterlogging stress conditions, were used for RNA-seq. In consequence, the maximal number of differentially expressed genes (DEGs) occurred in line 98. Gene ontology (GO) enrichment analysis revealed multiple stress-related biological processes for the common up-regulated genes. Line 98 had a significant increase in non-additive genes under waterlogging stress, with transgressive up-regulation and paternal-expression dominant patterns being the major gene expression profiles. Further, GO analysis identified 55 and 95 transgressive up-regulation genes that overlapped with the up-regulated genes shared by two parents in terms of responses to stress and stimulus, respectively. 6,640 genes in total displaying maternal-expression dominance patterns were observed in line 95. In addition, 16 key candidate genes, including SAP12, DOX1, and ERF017 which might be of significant importance for the formation of waterlogging tolerance heterosis in line 98, were highlighted.ConclusionThe current study provides a comprehensive overview of the root transcriptomes among F1 hybrids and their parents under waterlogging stress. These findings lay the foundation for further studies on molecular mechanisms underlying chrysanthemum heterosis on waterlogging tolerance.

Unraveling Hypothalamus-Pituitary dysregulation: Hypergonadotropism in F1 progeny due to prenatal exposure to hexavalent chromium.

The endocrine disruptor hexavalent chromium [Cr(VI)] is a proven reproductive toxicant. We recently demonstrated that prenatal Cr(VI) exposure causes testicular resistance to gonadotropins, resulting in hypergonadotropic hypoandrogenism in F1 rats. However, the mechanism driving hypergonadotropism in F1 rats exposed to Cr(VI) prenatally remains an enigma. Therefore, we hypothesized that 'Prenatal Cr(VI) exposure may disrupt steroid hormones-mediated negative feedback regulation of the hypothalamic GnRH, and its receptor in the pituitary of F1 rats, leading to hypergonadotropism.' We administered potassium dichromate (50, 100, or 200 mg/L) to pregnant rats through drinking water between days 9 and 14, and their male F1 offspring were euthanized at 60 days of age. Prenatal Cr(VI) exposure in F1 rats resulted in the accumulation of Cr in the hypothalamus and pituitary. Western blot detected decreased hypothalamic GnRH, Kisspeptin1, and its receptor GPR54, along with diminished ERα, AR, aromatase, and 5α reductase, and GnRH regulatory transcription factors Pit-1 and GATA-4 proteins. Immunohistochemical studies revealed increased immunopositivity of GnRH receptor, AR, 5α reductase, ERα, ERβ, and aromatase proteins in the pituitary, whereas decreased Kisspeptin1, GPR54, and inhibin β. Our findings imply that Cr(VI) exposure during the prenatal period disrupts the hypothalamic Kisspeptin-GPR54-Pit-1/GATA4-GnRH network, boosting the pituitary GnRH receptor. We conclude that prenatal exposure to Cr(VI) alters GnRH expression in the hypothalamus and its receptor in the pituitary of F1 progeny through interfering with the negative feedback effect of androgens and estrogens.

Genetic Variability and Selection Parameters for Yield and Its Contributing Traits in Bread Wheat (Triticum aestivum L. em. Thell)

Ten bread wheat genotype and their all possible cross combinations excluding their reciprocals (10 parents+45 F1s+45 F2s) were evaluated in a randomized block design with three replications during Rabi2022-2023 at Student’s Instructional Farm, C. S. Azad University of Agriculture and Technology-208002, Kanpur, U.P to get the extent of variability and related parameters to select effectively for grain yield and quality character. It is the big challenge for researchers to get high grain yield with high protein. The data was recorded on fourteen characters viz., days to heading (50%), days to maturity, plant height (cm), number of productive tillers per plant, chlorophyll content, spike length (cm), number of spikelets per spike, number of grains per spike, weight of grain per spike (g), 1000 grain weight (g), biological yield (g), harvest index (%),protein content (%) and grain yield per plant (g). The variability among parents was highest for days to maturity it ranged from 117.33 to 137.67 with the mean value 126.60. The variation in F1 progenies was highest for plant height ranged from 85.97 to 120.53 with the mean value of 96.71.The variation in F2 progenies was highest for plant height ranged from 83.70 to 120.20 with the mean value of 94.99. The result showed higher estimated values for phenotypic coefficient of variability(PCV) of all the fourteen characters as compared to their corresponding genotypic coefficient of variability (GCV). Highest value of PCV and GCV were noted for grain yield per plantin both generation F1s and F2s except GCV were observed for none of the character F1s. high heritability estimates were recorded for all characters in both generation F1s and F2s.High genetic gain was observed for grain yield per plant followed by biological yield per plant in both generation F1s and F2s.

Dominance complementation of parental heading date alleles of Hd1, Ghd7, DTH8, and PRR37 confers transgressive late maturation in hybrid rice.

Rice (Oryza sativa L.) is a short-day plant whose heading date is largely determined by photoperiod sensitivity (PS). Many parental lines used in hybrid rice breeding have weak PS, but their F1 progenies have strong PS and exhibit an undesirable transgressive late-maturing phenotype. However, the genetic basis for this phenomenon is unclear. Therefore, effective methods are needed for selecting parents to create F1 hybrid varieties with the desired PS. In this study, we used bulked segregant analysis with F1 Ningyou 1179 (strong PS) and its F2 population, and through analyzing both parental haplotypes and PS data for 918 hybrid rice varieties, to identify the genetic basis of transgressive late maturation which is dependent on dominance complementation effects of Hd1, Ghd7, DTH8, and PRR37 from both parents rather than from a single parental genotype. We designed a molecular marker-assisted selection system to identify the genotypes of Hd1, Ghd7, DTH8, and PRR37 in parental lines to predict PS in F1 plants prior to crossing. Furthermore, we used CRISPR/Cas9 technique to knock out Hd1 in Ning A (sterile line) and Ning B (maintainer line) and obtained an hd1-NY material with weak PS while retaining the elite agronomic traits of NY. Our findings clarified the genetic basis of transgressive late maturation in hybrid rice and developed effective methods for parental selection and gene editing to facilitate the breeding of hybrid varieties with the desired PS for improving their adaptability.