Siderophore Production Research Articles

A study on the potential of endophytic bacteria to promote plant growth: uses in agriculture and future directions

The escalating demand for chemical-free fertilizers in agriculture stems from the adverse impacts associated with chemical fertilizers on both human and animal health, as well as environmental pollution. To address this concern, plant-based microorganisms emerge as a promising solution for the development of environmentally sustainable biofertilizers. Among these microorganisms, endophytic bacteria, residing within plant tissues without causing harm to the host plant, exhibit exceptional attributes conducive to plant growth promotion. Notably, these bacteria demonstrate the production of phytohormones, ammonia, phosphate solubilization, and nitrogen fixation capabilities. Additionally, endophytic bacteria showcase the synthesis of hydrolytic enzymes, the production of siderophores, and antimicrobial activity against pathogens. Such characteristics contribute significantly to the robust growth and development of host plants, fostering tolerance to environmental stresses. This manuscript aims to comprehensively review the plant growth promotion activities of endophytic bacteria, elucidating their diversity and isolation from various plants. Furthermore, it explores the potential future directions in this burgeoning field of research, envisioning the development of endophytic bacterial strains capable of replacing traditional chemical fertilizers. Future research endeavors hold the promise of uncovering novel and effective endophytic bacterial strains, heralding a sustainable paradigm shift in the realm of agricultural fertilization.

Growth Promoting Characteristics of Bacillus amyloliquefaciens GZA69 and Its Biocontrol Potential Against Soft Rot of Amorphophallus konjac

Plant growth-promoting rhizobacteria (PGPR) are beneficial bacteria colonizing the plant rhizosphere and can promote plant growth. PGPR have important application potential in the field of microbial fertilizers. This study isolated and characterized a PGPR strain GZA69 from konjac rhizosphere soil collected from Damogu Village, Luliang County, Qujing City, Yunnan Province, China. The strain was identified as Bacillus amyloliquefaciens. GZA69 showed diverse plant growth-promoting abilities, including nitrogen fixation, phosphorus solubilization, siderophore production, and indole-3-acetic acid (IAA) production. Tomato was used as an indicator crop to evaluate its growth-promoting effect, two GZA69 suspension concentrations (A1, OD600 = 0.3 and A2, 0.6) were used to treat tomato seeds and seedlings. Plate confrontation assay and konjac corm tissue inoculation were conducted to identify the antagonistic effect of GZA69 strain on the pathogen of konjac soft rot disease. The results showed that, both GZA69 concentrations significantly promoted tomato seed germination (A) and seedling growth, with growth increased of 8.2% and 9.66% in height, 20.87% and 22.77% in root length, and 90% and 130% in fresh weight, respectively. Additionally, GZA69 demonstrated a significant inhibitory effect on the konjac soft rot pathogen, with an inhibition zone of 1.47±0.07 cm. Furthermore, GZA69 effectively reduced disease incidence in inoculated corm tissues, with disease index decreased by 8.00%, 16.23%, 24.80% in co-inoculated with different concentrations of GZA69 suspensions (solution of soft rot pathogen and GZA69 bacterial at ratios of 1:1, 1:2, and 1:3, respectively) comparted to the control (sterile water). In summary, the B. amyloliquefaciens GZA69 screened from konjac rhizosphere soil has various plant growth promoting characteristics and has the potential to prevent and control konjac soft rot disease, which has important application value for developing konjac microbial fertilizers.

Plant growth-promoting Bacillus cereus MCC3402 facilitates rice seedling growth under arsenic-spiked soil

Microorganisms can solve the global problem of arsenic (As) contamination in soil and water, by eliminating the hazardous metalloid from contaminated habitats. A native As-resistant PMM6 strain was isolated from the tainted agricultural field in Durgapur, India. Following phenotypic investigations, fatty acid methyl ester analysis, and 16S rDNA sequence-based homology, it was identified as Bacillus cereus. Various analytical techniques such as atomic absorption spectroscopy, Fourier transform infrared spectroscopy, X-ray diffraction, X-ray fluorescence, scanning electron microscopy, transmission electron microscopy and energy dispersive X-ray spectroscopy studies revealed a positive correlation between the strain's resistance properties against arsenate (75 mM) and arsenite (25 mM) and the biosorption and bioaccumulation of arsenic. The strain exhibited several important plant growth-promoting traits, including indole-3-acetic acid production (110.0±0.33μg/mL), 1-aminocyclopropane-1-carboxylate deaminase activity (2334.2±1.90 nm α-ketobutyrate/mg protein/h), phosphate solubilization, and siderophore production (68.0±2%). These traits facilitated the growth augmentation of rice seedlings under As stress, both in terms of physiological and biochemical parameters. Compared to uninoculated soil, the use of strain PMM6 helped to reduce As mobilization and oxidative stress in rice seedlings growing in As-spiked soil. Therefore, strain PMM6 holds the potential as bioremediator to restore As-contaminated agricultural lands while also promoting the growth of rice seedlings. It could thus be utilized in the bioremediation of As-contaminated agricultural lands in the near future.

Plant Beneficial Desert Actinomycete, Modestobacter caceresii KNN 45-2bT, Promote Growth of Tomato (Lycopersicum esculentum Mill.) under Drought Condition

Drought stress is currently the most serious challenge to global food security and agricultural productivity. Desert actinobacteria have gained attention as potential candidates for enhancing plant growth in water stress environments. In this regard, a desert actinomycete, namely Modestobacter caceresii strain KNN 45-2bT, was selected to investigate its plant growth promoting abilities and drought tolerance. Next, this desert strain was inoculated to tomato (Lycopersicum esculentum Mill.) under drought, and the results included increases in root length, shoot and root fresh weight, shoot and root dry weight, total fresh weight and dry weight, fruit weight, proline accumulation, total soluble sugar content and trolox content. Stress treatments on the bacterized tomato plants also resulted in the reduction of hydrogen peroxide accumulation. Putative proteins coding sequences conferring plant growth promoting (PGP) traits (IAA production, phosphate solubilization, siderophore production, nitrogen fixation) and drought response (biosynthesis of proline metabolism, oxidative and osmotic stress response) were also detected from their genomic analyses. In conclusion, these results provide credence to the idea that the inoculation of tomato plants with plant beneficial desert actinomycete is an effective method of combating the negative effects of drought stress.

The role of Ni- and Cd-resistant rhizobacteria in promoting the growth of rice seedlings and alleviating the combined phytotoxicity of Ni and Cd

The problem of potentially toxic metal pollution is increasingly acute with the development of human society. In this study, we investigated the remediation of nickel (Ni) and cadmium (Cd) co-contamination through inoculating rice with three new-isolated Ni- and Cd-resistant plant growth-promoting rhizobacteria (PGPR) Y3, Y4, and Y5. These three strains possessed growth-promoting properties, including 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase activity, the ability of indoleacetic acid (IAA) production, phosphate solubilization, siderophores production, and exopolysaccharide (EPS) development. According to 16S rDNA sequence homology, strains Y3, Y4, and Y5 were identified as Pseudomonas sp., Chryseobacterium sp., and Enterobacter sp., respectively. Based on the results of rice germination experiments conducted under combined toxicity, we set the contamination concentrations for Ni2+ at 20 μg mL−1 and Cd2+ at 40 μg mL−1. Then we conducted potting experiments at these concentration levels to study the effects of strains Y3, Y4, and Y5 on rice growth under synergistic Ni and Cd stress. The results indicated that the inoculated strains Y3, Y4, and Y5 were effective in promoting the growth of rice seedlings under the combined stress of Ni and Cd, and conferring tolerance to Ni and Cd by increasing the antioxidant enzyme activities of the seedlings. Among them, strain Y3 exhibited stronger ACC deaminase activity, IAA production capacity, and EPS production capacity, showing the most pronounced growth-promoting effect on rice. It was demonstrated that after inoculation with strain Y3, the germination rate of rice seeds increased by 43 %, the fresh weight of stems improved by 35 %, and the chlorophyll content enhanced by 70 % and other growth-promoting phenomena. Additionally, under Ni and Cd stress, strain Y5 performed better than strain Y4 in terms of IAA production capacity and its influence on rice root growth, suggesting that IAA production might play a specifically essential role in root growth under Ni and Cd stress.

Virulence factors associated with hyper virulent Klebsiella pneumoniae isolated from Different Clinical Sources

Klebsiella pneumonia is an opportunity pathogen causing several diseases including sepsis, pneumonia and wound infections. There are two pathotypes of Klebsiella pneumonia: classical K. pneumoniae (cKp) and hypervirulent K. pneumonia (hvkp). In this study, we attempted to discover the extent occurrence of hypervirulent K. pneumoniae strains among patients in Kirkuk city and their virulence factors. A total of 150 samples were collected from different hospitals in Kirkuk city (Kirkuk General Hospital, Azadi Teaching Hospital, Gynecological and Pediatric (Al-Nasr) Hospital and Children Hospital) during the period between November 2021 to June 2022. The age of patients ranged between 20- 60 years with both sexes. The results showed that 23.33% of K. pneumoniae isolates were positive for string test. Similar results were obtained by using sedimentation assay. The capsule of hvKp is a key virulence factor aiding in the bacterial dissemination and infection. For this reason, in current study, the capsular polysaccharide (CPS) was extracted and quantified. The results showed excessive production of capsular polysaccharide as seen in Klebsiella isolates 16,22,23,24,25,26,28 with an amount 49,41,50,74,49,49,73 μg/ml of CPS respectively. Siderophore production was also examined by using M9 minimal salts media. The results revealed that all K. pneumoniae isolates (100%) were able to produce siderophore. In addition, resistance to tellurite was also identified by using tellurite containing selective media and the results showed that 50% of isolates were resistant to tellurite and the remaining 50% were susceptible. A molecular study using conventional PCR revealed that 21 out of 30 isolates (70%) harbored the rmpA gene while the remaining 9 isolates (30%) lacked this gene. The presence of the iucA virulence gene was also detected and found to be present in all the isolates. Additionally, our findings indicated that 7 out of the 30 isolates (23%) were classified as hvkp.

Genetic diversity, stress tolerance and phytobeneficial potential in rhizobacteria of Vachellia tortilis subsp. raddiana

BackgroundSoil bacteria often form close associations with their host plants, particularly within the root compartment, playing a significant role in plant growth and stress resilience. Vachellia tortilis subsp. raddiana, (V. tortilis subsp. raddiana)a leguminous tree, naturally thrives in the harsh, arid climate of the Guelmim region in southern Morocco. This study aims to explore the diversity and potential plant growth-promoting (PGP) activities of bacteria associated with this tree.ResultsA total of 152 bacterial isolates were obtained from the rhizosphere of V. tortilis subsp. raddiana. Rep-PCR fingerprinting revealed 25 distinct genomic groups, leading to the selection of 84 representative strains for further molecular identification via 16 S rRNA gene sequencing. Seventeen genera were identified, with Bacillus and Pseudomonas being predominant. Bacillus strains demonstrated significant tolerance to water stress (up to 30% PEG), while Pseudomonas strains showed high salinity tolerance (up to 14% NaCl). In vitro studies indicated variability in PGP activities among the strains, including mineral solubilization, biological nitrogen fixation, ACC deaminase activity, and production of auxin, siderophores, ammonia, lytic enzymes, and HCN. Three elite strains were selected for greenhouse inoculation trials with V. tortilis subsp. raddiana. Strain LMR725 notably enhanced various plant growth parameters compared to uninoculated control plants.ConclusionsThe findings underscore the potential of Bacillus and Pseudomonas strains as biofertilizers, with strain LMR725 showing particular promise in enhancing the growth of V. tortilis subsp. raddiana. This strain emerges as a strong candidate for biofertilizer formulation aimed at improving plant growth and resilience in arid environments.

Isolation and Plant Growth Promotion Effect of Endophytic Siderophore-Producing Bacteria: A Study on Halophyte Sesuvium portulacastrum.

The objective of the present study was to isolate endophytes from the roots of the halophyte Sesuvium portulacastrum, which is applied for aquatic phytoremediation. From these endophytes, siderophore-producing bacteria were specifically isolated for their potential capacity to promote plant growth. The siderophore production capacity of the isolated bacteria was quantified, and a high-yield siderophore-producing strain was selected for further investigation. A total of 33 endophytic bacteria were successfully isolated and identified using a culturable approach. Of these, 10 siderophore-producing bacteria were identified using the selective agar assay, displaying siderophore unit (SU) values ranging from 11.90% to 80.39%. It is noteworthy that Erwinia sp. QZ-E9 exhibited the highest siderophore production capacity, achieving an SU of 80.39%. A microcosm co-cultivation experiment was conducted with the strain QZ-E9 in iron-deficient conditions (2 μmol/L Fe3⁺). The results demonstrated that strain QZ-E9 significantly enhanced the growth of S. portulacastrum, by increases in both fresh weight (1.41 g) and root length (18.7 cm). Furthermore, fluorescence in situ hybridization (FISH) was utilized to ascertain the colonization pattern of strain QZ-E9 within the plant roots. The analysis demonstrated that strain QZ-E9 exhibited extensive colonization of the epidermal and outer cortical cells of S. portulacastrum roots, as well as the intercellular spaces and vascular tissues. This colonization indicated that Erwinia sp. QZ-E9 plays a crucial role in promoting the growth of S. portulacastrum, presumably through its siderophore-mediated iron acquisition mechanism.

Unveiling the positive impacts of the genus Rhodococcus on plant and environmental health

Organic farming has emerged as a sustainable solution to the adverse effects (diminished nutritional value, compromised food quality, environmental contamination, and public health hazards) that are usually associated with harmful chemical pesticides. To overcome such loss, one must explore the plant-associated microbes that are the naturally occurring root commensal and could positively improve crop health. In this review, we highlight the importance of the bacterial genus Rhodococcus, a subset of Actinobacteria that carries immense potential in enhancing crop yield and is associated with bioremediation of toxic pesticides and other chemicals to improve soil health. However, it has been noticed that few species of Rhodococcus are pathogenic for the plant (R. fascians) as well as humans/animals (R. equi). But still, the majority of Rhodococcus isolates are found to be non-pathogenic and carry substantial beneficial traits. Here, we have attempted to comprise those beneficial traits of the different members of the genus Rhodococcus. The main emphasis of this review article is to explore the major areas such as enzyme production, phytohormone synthesis, growth regulation, siderophore production, bioremediation, organic compound degradation, and environmental pollution control. Opinions towards the applications of advanced methodologies for utilizing the cumulative prospective potential of the genus Rhodococcus have also been discussed in the different sections of the review. Conclusively, this article gathers the scattered information from the past and recent literature about this bacteria and provides the future direction about how it can improve plant/soil health and eliminate toxic chemicals and environmental pollutants.

Study of Plant Growth Promoting Abilities of Rhizobium Strains Isolated from Mungbean Root Nodules

Background: Plant Growth Promoting Rhizobacteria (PGPR) are a type of bacteria that use biofertilizers and other plant growth-promoting agents to increase plant output and growth. In the last several decades, there has been a global surge in the usage of beneficial soil microorganisms like PGPR for safe and sustainable agriculture due to the detrimental effects of artificial fertilizers on the environment and their rising prices. Plant-beneficial rhizobacteria have the potential to reduce the world's reliance on dangerous agricultural chemicals that upset agro-ecosystems. Today a large part of yield is lost due to the various stress mechanisms of plants. It could be classified into biotic and abiotic stress. These are generally a group of microorganisms that is found either in the rhizosphere or in the root nodules of plants. PGPR has beneficial impact, they colonize in the plant roots and improve crop yields and agricultural productivity and also produce some useful growth promoting growth hormones viz., IAA, Auxins, Cytokinin and Gibberellins. Methods: The bacterial isolates were screened for plant growth promoting traits such as phosphate solubilization, IAA production and siderophore production was tested qualitatively by using pikovskayas media, TSB (Tryptone Soy Broth) agar and Chrome Azurol Sulphate (CAS) blue agar respectively. Results: In present study out of the eight rhizobial isolates, five exhibited the phosphate solubilization zones, three shows negative result. However out of eight isolates five isolates produced IAA and three showed negative result. Among all isolates seven isolates were able to produce siderophore, while one showed negative result.

Adaptive microbiome responses to anthracnose in sorghum: Enhanced network complexity and disease resistance across plant niches

Anthracnose threatens sorghum productivity globally, with yield losses exceeding 50 % in some cases, making it crucial to understand plant-microbe-pathogen interactions to develop effective, sustainable control strategies. To probe deeper into the complexity of plant-microbe-pathogen relationships, this study used high-throughput sequencing to characterize microbial communities present in association with sorghum leaves and seeds harvested from both anthracnose infected and uninfected control plants. Our analysis shows that the variation in the diversity and composition of the microbiome due to anthracnose is indicative of an adaptive regulation by coexisting microbes with a plant for enhancing resistance against stresses. These changes were not only reflected by community composition, but also had remarkable effects on the topological properties of microbial ecological networks which further influence certain functions as well as key functional guilds related to plant growth. The presence of anthracnose significantly increased network complexity and resistance in the phyllosphere and leaf endosphere meta-microbiome, which may reflect an adaptive microbiome response to pathogen. The seed-associated microbiomes, however, had relatively no change in diversity and network properties indicating a stable background that may repel pathogen invasion. The study also suggests that anthracnose may facilitate its spread through the reorganization of microbial communities and the enrichment of specific beneficial microbes, aiding in plant defense against pathogens. This is achieved through an upregulation of siderophore production, antimicrobial compounds, phosphate solubilization and sulfur metabolism-specifically genes. Our work also uncovers the possibility for microbiome transfer through phyllosphere-and seed associated microbiomes, thereby indicating that pathogen spread between both above and below ground plant niches limit management options. To conclude, the present study reveals fresh insights into how plant-associated microbiomes respond to anthracnose stress and offers insight on their prospective in sustainable agriculture.

Potential siderophore-dependent mutualism in the harmful dinoflagellate Alexandrium pacificum (Group IV) and bacterium Photobacterium sp. TY1-4 under iron-limited conditions

Specific bacterial species induce algal blooms by producing growth-promoting substances, such as siderophores, under iron-limited conditions. However, the molecular mechanisms underlying these effects remain poorly understood. This study investigates the interactions between the harmful dinoflagellate Alexandrium pacificum (Group IV) and siderophore-producing bacteria, with a focus on iron acquisition facilitated by bacterial siderophores. During algal bloom seasons in the South Sea of Korea, Photobacterium sp. TY1-4 was isolated, which enhances A. pacificum cell density under iron-deficient conditions, TY1-4 can use the sterile exudates from A. pacificum as the sole source of carbon, suggesting a mutualistic relationship. Transcriptomic and genomic analyses revealed siderophore-mediated redox-based signaling and non-reductive pathways enhancing iron bioavailability. Photobacterium sp. TY1-4 initiates siderophore production through quorum sensing, whereas A. pacificum utilizes specific receptors and transporters for hydroxamate-type siderophores (ApFHUA and ApFHUC) to uptake iron. Three redox key iron-uptake genes were also identified in A. pacificum: membrane-bound ferroxidase ApFET3, high-affinity iron permease ApFTR1, and ferric-chelate reductases/oxidoreductases ApFRE1, with transcription levels inversely related to bioavailable iron. Increased iron bioavailability mediated by siderophores alleviates iron stress in A. pacificum, supporting its growth in iron-scarce environments. Additionally, A. pacificum co-cultured with Photobacterium sp. TY1-4 synthesized high-toxicity STXs, including GTX4, GTX2, and STX. These findings highlight the critical role of bacterial siderophores in iron binding and their potential impact on harmful algal bloom dynamics.

Characterization of Sinorhizobium strains isolated from arid and semi-arid areas of Morocco promoting the growth of Vachellia gummifera

Vachellia gummifera is a nitrogen-fixing shrub endemic to Morocco, and represents a suitable candidate for reforestation programs in dry areas. In this study, we identified seven root microsymbionts of V. gummifera, and determined their phenotypic characteristics, Plant Growth-Promoting (PGP) activities and their symbiotic efficiency. The bacteria were isolated from root nodules of the plant grown in Moroccan forest soils located in arid and semi-arid regions. The 16S rRNA gene sequences analysis of seven isolates showed similarity values ranging from 99.85% to 99.92% with Sinorhizobium fredii USDA205T. The phenotypic analyses displayed that the strains use different carbohydrates, mainly mono and di-saccharides, as a sole carbon source, and 13 out of 15 amino acids tested as the sole nitrogen source. The strains have variable tolerance to heavy metals, but are sensitive to salinity and high temperature, as no one grew in the presence of 2% NaCl (w/v) or at 40 °C, respectively. On the other hand, the strains grew in a very high osmotic stress environment induced by PEG 6000 (20% w/v), and they all grow in a pH range between 6.5 and 9. The strains possess PGP activities, such as phosphate solubilization, siderophore, and indole acetic acid production. Inoculation under axenic conditions showed that the strains increased the aerial biomass of inoculated plants up to 217%, whereas the relative symbiotic efficiency percentages (74.87–140,3%) showed that most strains are very efficient. From all these results we concluded that our strains may be proposed as inoculum for large-scale applications, such as reforestation programs.

Profiling Metabolites with Antifungal Activities from Endophytic Plant-Beneficial Strains of Pseudomonas chlororaphis Isolated from Chamaecytisus albus (Hack.) Rothm.

Fungal phytopathogens represent a large and economically significant challenge to food production worldwide. Thus, the application of biocontrol agents can be an alternative. In the present study, we carried out biological, metabolomic, and genetic analyses of three endophytic isolates from nodules of Chamaecytisus albus, classified as Pseudomonas chlororaphis acting as antifungal agents. The efficiency of production of their diffusible and volatile antifungal compounds (VOCs) was verified in antagonistic assays with the use of soil-borne phytopathogens: B. cinerea, F. oxysporum, and S. sclerotiorum. Diffusible metabolites were identified using chromatographic and spectrometric analyses (HPTLC, GC-MS, and LC-MS/MS). The phzF, phzO, and prnC genes in the genomes of bacterial strains were confirmed by PCR. In turn, the plant growth promotion (PGP) properties (production of HCN, auxins, siderophores, and hydrolytic enzymes, phosphate solubilization) of pseudomonads were bioassayed. The data analysis showed that all tested strains have broad-range antifungal activity with varying degrees of antagonism. The most abundant bioactive compounds were phenazine derivatives: phenazine-1-carboxylic acid (PCA), 2-hydroxy-phenazine, and diketopiperazine derivatives as well as ortho-dialkyl-aromatic acids, pyrrolnitrin, siderophores, and HCN. The results indicate that the tested P. chlororaphis isolates exhibit characteristics of biocontrol organisms; therefore, they have potential to be used in sustainable agriculture and as commercial postharvest fungicides to be used in fruits and vegetables.

Tapping into haloalkaliphilic bacteria for sustainable agriculture in treated wastewater: insights into genomic fitness and environmental adaptation.

The increasing salinity and alkalinity of soils pose a global challenge, particularly in arid regions such as Tunisia, where about 50% of lands are sensitive to soil salinization. Anthropogenic activities, including the use of treated wastewater (TWW) for irrigation, exacerbate these issues. Haloalkaliphilic bacteria, adapted to TWW conditions and exhibiting plant-growth promotion (PGP) and biocontrol traits, could offer solutions. In this study, 24 haloalkaliphilic bacterial strains were isolated from rhizosphere sample of olive tree irrigated with TWW for more than 20years. The bacterial identification using 16S rRNA gene sequencing showed that the haloalkaliphilic isolates, capable of thriving in high salinity and alkaline pH, were primarily affiliated to Bacillota (Oceanobacillus and Staphylococcus). Notably, these strains exhibited biofertilization and enzyme production under both normal and saline conditions. Traits such as phosphate solubilization, and the production of exopolysaccharide, siderophore, ammonia, and hydrogen cyanide were observed. The strains also demonstrated enzymatic activities, including protease, amylase, and esterase. Four selected haloalkaliphilic PGPR strains displayed antifungal activity against Alternaria terricola, with three showing tolerances to heavy metals and pesticides. The strain Oceanobacillus picturea M4W.A2 was selected for genome sequencing. Phylogenomic analyses indicated that the extreme environmental conditions probably influenced the development of specific adaptations in M4W.A2 strain, differentiating it from other Oceanobacillus picturae strains. The presence of the key genes associated with plant growth promotion, osmotic and oxidative stress tolerance, antibiotic and heavy metals resistance hinted the functional capabilities might help the strain M4W.A2 to thrive in TWW-irrigated soils. By demonstrating this connection, we aim to improve our understanding of genomic fitness to stressed environments. Moreover, the identification of gene duplication and horizontal gene transfer events through mobile genetic elements allow the comprehension of these adaptation dynamics. This study reveals that haloalkaliphilc bacteria from TWW-irrigated rhizosphere exhibit plant-growth promotion and biocontrol traits, with genomic adaptations enabling their survival in high salinity and alkaline conditions, offering potential solutions for soil salinization issues.

Physiological Basis of Plant Growth Promotion in Rice by Rhizosphere and Endosphere Associated Streptomyces Isolates from India

This study demonstrated the plant growth-promoting capabilities of native actinobacterial strains obtained from different regions of the rice plant, including the rhizosphere (FT1, FTSA2, FB2, and FH7) and endosphere (EB6). We delved into the molecular mechanisms underlying the beneficial effects of these plant-microbe interactions by conducting a transcriptional analysis of a select group of key genes involved in phytohormone pathways. Through in vitro screening for various plant growth-promoting (PGP) traits, all tested isolates exhibited positive traits for indole-3-acetic acid synthesis and siderophore production, with FT1 being the sole producer of hydrogen cyanide (HCN). All isolates were identified as members of the Streptomyces genus through 16S rRNA amplification. In pot culture experiments, rice seeds inoculated with strains FB2 and FTSA2 exhibited significant increases in shoot dry mass by 7% and 34%, respectively, and total biomass by 8% and 30%, respectively. All strains led to increased leaf nitrogen levels, with FTSA2 demonstrating the highest increase (4.3%). On the contrary, strains FB2 and FT1 increased root length, root weight ratio, root volume, and root surface area, leading to higher root nitrogen content. All isolates, except for FB2, enhanced total chlorophyll and carotenoid levels. Additionally, qRT-PCR analysis supported these findings, revealing differential gene expression in auxin (OsAUX1, OsIAA1, OsYUCCA1, OsYUCCA3), gibberellin (OsGID1, OsGA20ox-1), and cytokinin (OsIPT3, OsIPT5) pathways in response to specific actinobacterial treatments. These actinobacterial strains, which enhance both aboveground and belowground crop characteristics, warrant further evaluation in field trials, either as individual strains or in consortia. This could lead to the development of commercial bioinoculants for use in integrated nutrient management practices.

Antagonism of rhizosphere Trichoderma brevicompactum DTN19 against the pathogenic fungi causing corm rot in saffron (Crocus sativus L.) in vitro.

Corm rot in saffron (Crocus sativus L.) significantly impacts yield and quality. Non-toxic fungi, particularly Trichoderma species, are valuable for biological control due to their production of diverse and biologically active secondary metabolites. This study aimed to isolate an effective antagonistic fungus against the pathogenic fungi causing corm rot in saffron. Four pathogenic fungi (Fusarium oxysporum, Fusarium solani, Penicillium citreosulfuratum, and Penicillium citrinum) were isolated from diseased saffron bulbs in Chongming. Initial screening through dual culture with these pathogens re-screening from rhizosphere soil samples of C. sativus based on its inhibitory effects through volatile, nonvolatile, and fermentation broth metabolites. The inhibitory effect of biocontrol fungi on pathogenic fungi in vitro was evaluated by morphological observation and molecular biology methods. Antagonistic fungi were identified as Trichoderma brevicompactum DTN19. F. oxysporum was identified as the most severe pathogen. SEM (scanning electron microscope) and TEM (transmission electron microscope) observations revealed that T. brevicompactum DTN19 significantly inhibited the growth and development of F. oxysporum mycelium, disrupting its physiological structure and spore formation. Additionally, T. brevicompactum DTN19 demonstrated nitrogen fixation and production of cellulase, IAA (Indole acetic acid), and siderophores. Whole-genome sequencing of strain DTN19 revealed genes encoding protease, cellulase, chitinase, β-glucosidase, siderophore, nitrogen cycle, and sulfate transporter-related proteins. T. brevicompactum DTN19 may inhibit the propagation of pathogenic fungi by destroying their cell walls or producing antibiotics. It can also produce IAA and iron carriers, which have the potential to promote plant growth. Overall, T. brevicompactum DTN19 showed the development prospect of biological agents.

Agricultural Biotechnological Potential of Bacillus velezensis C3-3 and Cytobacillus sp. T106 from Resource Islands of a Semi-arid Zone of La Guajira-Colombia

Resource islands are vegetative formations in arid and semi-arid ecosystems that harbor microorganisms facing extreme conditions. However, there is a limitation in the knowledge of the agricultural biotechnological potential of microorganisms present in these islands. This study aimed to determine the capacity of Bacillus velezensis C3-3 and Cytobacillus sp. T106 isolates from resource islands to promote plant growth and control the phytopathogen Rhizoctonia solani. The bacteria were sequenced, and both grew at 50 °C, resisted 5% NaCl, withstood UV exposure, and grew in extreme pH conditions. Sixty-six genes in C3-3 and 71 in T106 were identified associated with plant growth promotion, and C3-3 was shown to promote leaf growth in lettuce plants. This promotional effect was associated with the production of indole-3-acetic acid (IAA), phosphorus solubilization, and the presence of genes related to the assimilation of rhizosphere exudates. Both strains inhibited R. solani through the production of volatile compounds and antagonism. Forty-five and 40 of these genes in C3-3 and T106, respectively, were associated with the production of proteases, lipases, siderophores, antimicrobial compounds, degradation enzymes, and secretion systems. Notably, Cytobacillus sp. has not been previously reported as a biocontrol agent. This work contributes to the evidence of the biotechnological potential of semi-arid region bacteria, offering prospects for improving agricultural production in areas with limiting conditions.

Bacillus subtilis B55 degraded the ferulic acid and p-coumaric acid and changed the soil bacterial community in soils.

This study aimed to assess the effects of phenolic acid-degrading bacteria strains on phenolic acid content, plant growth, and soil bacterial community in phenolic acid-treated soils. The strain of interest coded as B55 was isolated from cucumber root litter, and its degradation rates of ferulic acid and p-coumaric acid were 81.92% and 72.41% in Luria-Bertani solution, respectively, and B55 was identified as Bacillus subtilis. B55 had plant growth-promoting attributes, including solubilization of inorganic phosphate and production of siderophore and indole acetic acid. Both ferulic acid and p-coumaric acid significantly restrained an increase in cucumber seedling dry biomass, while the B55 inoculation not only completely counteracted the damage of phenolic acids to cucumber seedlings and decreased the content of ferulic acid and p-coumaric acid in soil, but also promoted cucumber seedlings growth. Amplicon sequencing found that B55 inoculation changed the cucumber rhizosphere bacterial community structure and promoted the enrichment of certain bacteria, such as Pseudomonas, Arthrobacter, Bacillus, Flavobacterium, Streptomyces, and Comamonas. B55 not only promoted cucumber seedling growth, and decreased the content of ferulic acid and p-coumaric acid in soil, but it also increased the relative abundance of beneficial microorganisms in the cucumber rhizosphere.

Improved salinity tolerance in cucumber seedlings inoculated with halotolerant bacterial isolates with plant growth-promoting properties

To address salinity stress in plants in an eco-friendly manner, this study investigated the potential effects of salinity-resistant bacteria isolated from saline agricultural soils on the growth of cucumber (Cucumis sativus, cv. Royal) seedlings. A greenhouse factorial experiment was conducted based on a completely randomized design (CRD) with two factors, salinity at four levels and five bacterial treatments, with three replications (n = 3). Initially, fifty bacterial isolates were screened for their salinity and drought tolerance, phosphate solubilization activity, along with production of auxin, siderophore and hydrogen cyanide. Isolates K4, K14, K15, and C8 exhibited the highest resistance to salinity and drought stresses in vitro. Isolates C8 and K15 demonstrated the highest auxin production capacity, generating 2.95 and 2.87 µg mL− 1, respectively, and also exhibited significant siderophore production capacities (by 14% and 11%). Additionally, isolates C8 and K14 displayed greater phosphate solubilization activities, by 184.64 and 122.11 µg mL− 1, respectively. The statistical analysis revealed that the selected four potent isolates significantly enhanced all growth parameters of cucumber plants grown under salinity stress conditions for six weeks. Plant height increased by 41%, fresh and dry weights by 35% and 7%, respectively, and the leaf area index by 85%. The most effective isolate, C8, was identified as Bacillus subtilis based on the 16 S rDNA amplicon sequencing. This study demonstrated that inoculating cucumber seedlings with halotolerant bacterial isolates, such as C8 (Bacillus subtilis), possessing substantial plant growth-promoting properties significantly alleviated salinity stress by enhancing plant growth parameters. These findings suggest a promising eco-friendly strategy for improving crop productivity in saline agricultural environments.