Background: The use of promotility agents has been advocated in capsule endoscopy (CE) to increase the rate of intestinal transit time and assure complete visualization over the allotted lifetime of the battery. The effect of small bowel transit time (SBTT) on diagnostic yield, however, has not been evaluated on a large-scale basis. Aim: To assess the effect of SBTT on the ability of CE to detect significant intestinal pathology in a large cohort of patients. Methods: Data were collected prospectively on patients undergoing CE without the use of promotility agents at Johns Hopkins Hospital between January 2006 and June 2007. In patients investigated for anemia or obscure GI bleeding, the following lesions were considered clinically relevant: ulcers, erosions, AVMs, red spots, varices, vascular ectasias, and fresh blood. For those with diarrhea or abdominal pain, only ulcers, erosions, and fresh blood were considered relevant. SBTT was divided into 2-hr intervals between 0-8 hr. Age, gender, indication, inpatient vs. outpatient status, and bowel prep (poor/average/good) were identified as candidate risk factors affecting SBTT. Univariate and bivariate logistic regression analysis was performed to study the effect of SBTT on diagnostic yield. Results: Data were analyzed in 212 patients undergoing CE for 4 different indications (anemia = 42, obscure GI bleeding = 78, diarrhea = 38, pain = 54). Most studies were performed in outpatients (n = 175, 83%); ∼70% of capsules reached the cecum. Mean SBTT overall was 237.0 min (3.9 hr). Age, gender, bowel prep, inpatient status, and study indication did not significantly affect SBTT. Increased SBTT was independently associated with increased diagnostic yield; compared to SBTT = 0-2 hr, patients with SBTT = 2-4 hr (OR = 1.7, p = 0.4), 4-6 hr (OR = 1.8, p = 0.3), and 6-8 hr (OR = 9.6, p = 0.05) were more likely to have a clinically significant finding on CE. In each category of SBTT, >80% patients were reported to have a “good” bowel prep. Conclusion: Prolonged SBTT during CE (>6 hr) is associated with an increased diagnostic yield. This finding does not appear to be related to the quality of the bowel prep, and may be due to a positive effect on image quality during a “slower” study. The use of promotility agents may adversely affect the ability of CE to detect significant intestinal pathology.