The article targets binomial ideals in quantum tori and quantum affine spaces. First, noncommutative analogs of known results for commutative (Laurent) polynomial rings are obtained, including the following: Under the assumption of an algebraically closed base field, it is proved that primitive ideals are binomial, as are radicals of binomial ideals and prime ideals minimal over binomial ideals. In the case of a quantum torus Tq, the results are strongest: In this situation, the binomial ideals are parametrized by characters on sublattices of the free abelian group whose group algebra is the center of Tq; the sublattice-character pairs corresponding to primitive ideals as well as to radicals and minimal primes of binomial ideals are determined. As for occurrences of binomial ideals in quantum algebras: It is shown that cocycle-twisted group algebras of finitely generated abelian groups are quotients of quantum tori modulo binomial ideals. Another appearance is as follows: Cocycle-twisted semigroup algebras of finitely generated commutative monoids, as well as quantum affine toric varieties, are quotients of quantum affine spaces modulo certain types of binomial ideals.