Primary Carbon Source Research Articles

Sustainable production of yeast oil from rice straw hydrolysate by Pseudozyma parantarctica through fed-batch cultivation for bio-polyurethane foam formation

Rice straw serves as an alternative feedstock for yeast oil (YO) production and bio-polyurethane (BPU) foam formation. This study optimized yeast growth and YO production by Pseudozyma parantarctica, utilizing rice straw hydrolysate (RSH) as the primary carbon source. Fed-batch strategies were explored to enhance YO production efficiency and its conversion into BPU foam. The optimized conditions proved highly effective in yielding biomass and YO from RSH-OPM. The fed-batch approach significantly improved biomass, YO production, and oil content to 7.35 ± 0.18 g/L, 3.77 ± 0.09 g/L, and 51.21 ± 0.15 % (w/w), respectively. The main fatty acid (FA) compositions of YO consisted of C:16 to C:18 FAs for over 92 %. RSH-based YO was successfully transformed into both rigid and semi-rigid BPU foams. This research demonstrated the feasibility and potential of using RSH as a low-cost and renewable carbon source for YO production and BPU foam formation.

Ambient Electroreductive Carboxylation of Unactivated Alkyl Chlorides and Polyvinyl Chloride (PVC) Upgrading.

Electrosynthesis of alkyl carboxylic acids upon activating stronger alkyl chlorides at low-energy cost is desired in producing carbon-rich feedstock. Carbon dioxide (CO2), a greenhouse gas, has been recognized as an ideal primary carbon source for those syntheses, and such events also mitigate the atmospheric CO2 level, which is already alarming. On the other hand, the promising upcycling of polyvinyl chloride to polyacrylate is a high energy-demanding carbon-chloride (C-Cl) bond activation process. Molecular catalysts that can efficiently perform such transformation under ambient reaction conditions are rarely known. Herein, we reveal a nickel (Ni)-pincer complex that catalyzes the electrochemical upgrading of polyvinyl chloride to polyacrylate in 95 % yield. The activities of such a Ni electrocatalyst bearing a redox-active ligand were also tested to convert diverse examples of unactivated alkyl chlorides to their corresponding carboxylic acid derivatives. Furthermore, electronic structure calculations revealed that CO2 binding occurs in a resting state to yield an η2-CO2 adduct and that the C-Cl bond activation step is the rate-determining transition state, which has an activation energy of 19.3 kcal/mol. A combination of electroanalytical methods, control experiments, and computational studies were also carried out to propose the mechanism of the electrochemical C-Cl activation process with the subsequent carboxylation step.

An Arctic sea ice spring bloom driven and dominated by Dinoflagellates - a harbinger of the future sea ice?

The sea ice spring bloom is crucial for sustaining Arctic marine food webs, with sea ice algae serving as primary carbon sources for higher trophic levels. Despite the prevailing dominance of diatom species in sea ice spring blooms, our study highlights a notable deviation, showcasing a bloom driven by dinoflagellates. Through field sampling of first-year sea ice cores and subsequent analysis of physical and biogeochemical parameters, combined with amplicon sequencing of the 18S rRNA gene, we investigated the occurrence and implications of this significant dinoflagellate bloom, with a particular focus on Polarella glacialis. Our findings reveal that high irradiances at the top of the ice core, coupled with elevated nutrient availability and warm ice conditions, are key drivers of this phenomenon, as elucidated by redundancy analysis. Moreover, our results suggest a potential climate-driven decline in snow cover on sea ice, increased open leads, and thinner sea ice, which may favor the proliferation of dinoflagellates over diatoms. This alternative dinoflagellate-dominated bloom could have profound ecological consequences, given the enriched omega-3 fatty acid content of dinoflagellates, thereby influencing energy transfer within the Arctic marine food web. Furthermore, our study identifies the presence of not only Polarella glacialis but also Chytridinium, an ectoparasite on copepod eggs, and the green algae Ulothrix in relatively high abundances within the sea ice. These findings shed light on the intricate interplay between environmental factors and microbial community dynamics within Arctic sea ice ecosystems.

The hidden oases: unveiling trophic dynamics in Namib's fog plant ecosystem

The Namib Desert is a hyperarid coastal desert where fog is a major moisture source. We hypothesized that the fog-harvesting grass Stipagrostis sabulicola establishes an important ecological niche, termed the "Fog-Plant-Oases" (FPOs), and serves as the primary carbon source for the invertebrate community. To determine this, we measured the natural variations of the stable carbon and nitrogen isotopes (δ13C and δ15N) of invertebrates as well as that of plant biomass and belowground detritus and estimated the contributions of the fog plants in their diets. Our findings revealed a complex trophic structure and demonstrated that S. sabulicola fuels carbon flow from lower to higher trophic levels in the aboveground food web. The distinct δ13C values of bacterial- and fungal-feeding nematodes indicated however the separation of the aboveground niche, which is primarily sustained by S. sabulicola, from the belowground niche, where wind-blown sediments may serve as the main energy source for the soil biota. Our findings further accentuate the critical role of S. sabulicola FPOs in establishing complex trophic dynamics and a distinctive food web within the hyperarid Namib dunes.

Bio-Prospecting Xylose-Utilizing, Exopolysaccharide (EPS)-Producing Bacteria and EPS Quantification through Submerged Fermentation using Xylose as the Major Carbon Source

Study’s Novelty/ Excerpt This study identified bacterial isolates from diverse environments capable of utilizing xylose for exo-polysaccharide (EPS) production, an area with limited prior research. Potential EPS producers were isolated and identified as Staphylococcus, Enterobacter, Kocuria, Klebsiella, Enterococcus, Serratia, and Burkholderia species using a salt-based medium with xylose as the primary carbon source. The highest EPS production was observed in Enterobacter cloacae D1, E. cloacae D2, Klebsiella oxytoca D2, and K. oxytoca G1, ranging from 0.04 g/L to 2.0 g/L, highlighting these isolates' potential for optimization and application in various industries. Full Abstract Many microorganisms are capable of producing Exo-polysaccharides (EPS) while utilizing simple sugars and hexoses. These EPS found applications in various fields, such as agricultural biotechnology, pharmaceuticals, textiles, and food industries. However, there is a lack of studies on EPS-elaborating bacteria that can utilize pentoses like xylose. Therefore, the utilization of alternative carbon sources for EPS production has become a focus of recent research. This study aimed to prospect bacteria that can utilize xylose for EPS production. Samples from agricultural soil, dump sites, saline soil, cement-contaminated soil, fresh cow milk, cow dung, and yogurt were serially diluted and cultured in a salt-based medium with xylose as the primary carbon source. Slimy and mucoid colonies were selected as potential EPS-producing isolates and identified morphologically and biochemically using the VITEK 2 Automated identification system. The quantification of EPS production by these isolates was conducted through submerged fermentation with xylose as the sole carbon source. The mean heterotrophic bacterial count of xylose-utilizing bacteria ranged from 2.1x106 CFU to 3.5x108 CFU per gram of the samples analyzed. The slimy and mucoid colonies were identified as members of the genera Staphylococcus, Enterobacter, Kocuria, Klebsiella, Enterococcus, Serratia, and Burkholderia. The quantities of EPS produced by the isolates ranged from 0.04 g/L to 2.0 g/L, with E. cloacae D1, E. cloacae D2, K. oxytoca D2, and K. oxytoca G1 elaborating the highest amount of EPS. Bacterial isolates capable of utilizing xylose for EPS production were obtained from various sources, showing potential for further optimization

Impact of using yeast derivatives on the development of atypical aging in wines

Yeast derivatives (YDs) are commercial products obtained from yeast colonies grown in bioreactors then inactivated and dried. They are employed in winemaking to supply nitrogen (N), enhance yeast growth and remove unwanted compounds. Since glucose is the primary carbon and energy source for yeast growth, agricultural byproducts are commonly used in their production. Atypical aging (ATA) is a wine aroma defect arising from the oxidation of indole-3-acetic acid (IAA) to 2-aminoacetophenone (AAP). It entails the appearance of unpleasant odours as well as the rapid loss of varietal aromas. As IAA is one of the main plant hormones and YDs are often manufactured using material of plant origin, it can be assumed that AAP precursors are contained in those commercial formulations. If this is the case, the use of YDs could potentially increase the risk of obtaining ATA-tainted wines. To explore this hypothesis, 28 YDs were screened for the presence of AAP-related compounds, as well as their amino acidic content. Since several ATA precursors were detected, fermentation experiments were carried out in which different amounts of YD were added to different grape musts. Interestingly, depending on the nature of the commercial formulation, AAP development was observed to be either enhanced or diminished. More specifically, as well as concentration of AAP and precursors, the presence of cell walls within the YDs seemed to have an influence on the development of this defect. Furthermore, as diammonium phosphate (DAP) is also used to provide grape must with N, the effect of supplementing must with DAP was investigated. The addition of increasing doses of DAP did not significantly affect the accumulation of AAP. These results are very promising for both winemakers and YD producers, and they highlight the need for further research on the use of YDs in oenology.

Spatial, Temporal, and Interspecific Differences in Composition of Stable Isotopes in Fishes in Maryland Coastal Bays

Carbon (δ13C) and nitrogen (δ15N) isotopes were used to evaluate spatial, temporal, and interspecific differences in trophic relationships of four fish species (Paralichthys dentatus, Anchoa mitchilli, Leiostomus xanthurus, and Bairdiella chrysoura) in Maryland’s coastal bays. The δ13C values for all species were more enriched in 2017 than in 2018, a year of higher-than-average rainfall that likely caused higher amounts of terrestrial carbon to enter the estuary. There were significant differences among species in the δ13C values, with L. xanthurus being the least depleted (−17.2‰ in 2017; −18.8‰ in 2018). Spatially, the δ13C values of the species, particularly P. dentatus and B. chrysoura, were more depleted in the northern bays, which have a higher nutrient content and receive more freshwater inflow directly from tributaries, than the southern bays. The observed δ13C values (−19.5 ± 0.2‰ to –17.2 ± 0.3‰), however, indicate that marine phytoplankton was the primary carbon source of the fishes. Overall, A. mitchilli was the most enriched in δ15N (13.0‰), and L. xanthurus was the most depleted (10.2‰). δ15N was more enriched in fish from the more human-impacted northern bays than in fish from the southern bays, though this might also have stemmed from the differences in the diet composition of the species in the northern and southern bays. A. mitchilli had the highest trophic level, while L. xanthurus and P. dentatus had the lowest trophic levels. Niche breadth was widest in L. xanthurus compared to the other fish species, suggesting a higher variability in diets among L. xanthurus individuals, leading to specialized diets. There was a high niche overlap between B. chrysoura, A. mitchilli, and L. xanthurus, which indicates they fed on similar prey resources.

Geochemical and Isotopic Techniques Constraints on the Origin, Evolution, and Residence Time of Low‐enthalpy Geothermal Water in Western Wugongshan, SE China

AbstractGeothermal resources are increasingly gaining attention as a competitive, clean energy source to address the energy crisis and mitigate climate change. The Wugongshan area, situated in the southeast coast geothermal belt of China, is a typical geothermal anomaly and contains abundant medium‐ and low‐temperature geothermal resources. This study employed hydrogeochemical and isotopic techniques to explore the cyclic evolution of geothermal water in the western Wugongshan region, encompassing the recharge origin, water–rock interaction mechanisms, and residence time. The results show that the geothermal water in the western region of Wugongshan is weakly alkaline, with low enthalpy and mineralization levels. The hydrochemistry of geothermal waters is dominated by Na‐HCO3 and Na‐SO4, while the hydrochemistry types of cold springs are all Na‐HCO3. The hydrochemistry types of surface waters and rain waters are Na‐HCO3 or Ca‐HCO3. The δD and δ18O values reveal that the geothermal waters are recharged by atmospheric precipitation at an altitude between 550.0 and 1218.6 m. Molar ratios of major solutes and isotopic compositions of 87Sr/86Sr underscore the significant role of silicate weathering, dissolution, and cation exchange in controlling geothermal water chemistry. Additionally, geothermal waters experienced varying degrees of mixing with cold water during their ascent. The δ13C values suggest that the primary sources of carbon in the geothermal waters were biogenic and organic. The δ34S value suggests that the sulfates in geothermal water originate from sulfide minerals in the surrounding rock. Age dating using 3H and 14C isotopes suggests that geothermal waters have a residence time exceeding 1 kaBP and undergo a long‐distance cycling process.

Qualea grandiflora Mart. (Vochysiaceae) seed reserves and aluminum: Usage and mobilization during germination and seedling development

AbstractQualea grandiflora Mart. is an aluminum (Al)‐accumulating Cerrado species with a metabolic dependency on Al. This study aimed to determine the presence and concentration of Al and other reserve components in Q. grandiflora seeds, as well as their respective distribution patterns, mobilization, and usage during germination and seedling growth. Thus, the concentration of Al and other minerals in seeds, seedlings, and soils was measured. Also, histochemical and energy‐dispersive X‐ray spectroscopy (EDS) analyses were performed to observe the distribution of Al, proteins, and lipids in Q. grandiflora seeds and seedlings. Additionally, the concentration of proteins and lipids was assessed as well. Hence, even in soils with low exchangeable Al3+, Q. grandiflora seeds accumulated about 6.43 g of Al/kg of dry matter (DM) together with considerable concentrations of N, P, K, Ca, and Mg. Exogenous Al had no effect on the germination properties of Q. grandiflora seeds. Furthermore, approximately 60% of the seed Al was translocated to seedling leaves. Proteins and lipids were the main organic reserves in Q. grandiflora seeds. The histochemical analysis revealed that the bulk of Al in seeds was in the cotyledons, which were also the location sites of proteins and lipids. Proteins and lipids were the primary source of energy and carbon for seedling growth. Therefore, fatty acids, proteins, and Al could play a central role during seed germination and seedling establishment, which could help to explain why this species is one of the most widespread plants in the Cerrado.

Assessing Diet & Trophic Position of Fish in Chenderoh Reservoir, Malaysia: SCA & SIA Approach

The present study assessed and compared the diet and trophic positions (TP) of two carnivorous fish H. macrolepidota and C. ocellaris from Chenderoh Reservoir, Malaysia. The focal goal of the study was to understand the effects of invasive non-indigenous species (NIS), C. ocellaris, on the native indigenous (IS) fish species, H. macrolepidota. Data were acquired from September 2014 to February 2015 within the study area. The assessment was grounded in stomach content analysis (SCA) and stable isotope analysis (SIA), which collectively clarified the feeding habits and trophic positions (TP) of these selected fish. In total, 184 fish samples (comprising 64 individuals of H. macrolepidota and 120 individuals of C. ocellaris) underwent stomach content analysis (SCA). Additionally, 24 individuals (12 of H. macrolepidota and 12 of C. ocellaris), sampled from December 2014 to February 2015, were selected for stable isotope analysis (SIA). The mean RGL values for H. macrolepidota and C ocellaris were 0.98 ± 0.18 and 1.10 ± 0.15 (Mean ± SD), respectively, aligning with known ranges for carnivorous fish. These values also clarified that both species occupy higher TP in the food web as tertiary or quaternary consumers. SCA findings also revealed that fish and crustaceans were the predominant food categories for H. macrolepidota, while C. ocellaris predominantly fed on fish. The mean stomach fullness index (MSF) and the gastrosomatic index (GSI) corroborated the differences in the foraging performance of the fishes, with C. ocellaris having a higher MSF (2.03) compared to H. macrolepidota (0.65). These implied that C. ocellaris had plentiful of food and encountered fewer diet-related challenges in the ecosystem. From SIA, δ13C values indicated that the primary carbon sources for both species are C3 plants, particularly aquatic vegetation. Further, δ15N values further ensured that both H. macrolepidota and C. ocellaris are carnivorous in nature and occupy higher TP in the ecosystem.

Cotyledons as the primary source of carbon and mineral nutrients during early growth of a savanna tree

Cotyledons as the primary source of carbon and mineral nutrients during early growth of a savanna tree

Methanotrophy: A Biological Method to Mitigate Global Methane Emission

Methanotrophy is a biological process that effectively reduces global methane emissions by utilizing microorganisms that can utilize methane as a source of energy under both oxic and anoxic conditions, using a variety of different electron acceptors. Methanotrophic microbes, which utilize methane as their primary source of carbon and energy, are microorganisms found in various environments, such as soil, sediments, freshwater, and marine ecosystems. These microbes play a significant role in the global carbon cycle by consuming methane, a potent greenhouse gas, and converting it into carbon dioxide, which is less harmful. However, methane is known to be the primary contributor to ozone formation and is considered a major greenhouse gas. Methane alone contributes to 30% of global warming; its emissions increased by over 32% over the last three decades and thus affect humans, animals, and vegetation adversely. There are different sources of methane emissions, like agricultural activities, wastewater management, landfills, coal mining, wetlands, and certain industrial processes. In view of the adverse effects of methane, urgent measures are required to reduce emissions. Methanotrophs have attracted attention as multifunctional bacteria with potential applications in biological methane mitigation and environmental bioremediation. Methanotrophs utilize methane as a carbon and energy source and play significant roles in biogeochemical cycles by oxidizing methane, which is coupled to the reduction of various electron acceptors. Methanotrophy, a natural process that converts methane into carbon dioxide, presents a promising solution to mitigate global methane emissions and reduce their impact on climate change. Nonetheless, additional research is necessary to enhance and expand these approaches for extensive use. In this review, we summarize the key sources of methane, mitigation strategies, microbial aspects, and the application of methanotrophs in global methane sinks with increasing anthropogenic methane emissions.

Latitudinal patterns and drivers of plant lignin and microbial necromass accumulation in forest soils: Disentangling microbial and abiotic controls

Plant- and microbial-derived compounds are the two primary sources of the soil organic carbon (SOC) pool. However, whether and how biotic and abiotic factors regulate the means through which microbes and plants contribute to SOC accumulation at a regional scale remains unclear. This study investigated the distribution patterns of plant lignin components and microbial necromass in soils, as indicated by lignin phenols and amino sugars across five latitudinal forests in eastern China. The contents of plant lignin and microbial necromass in the soil increased with increasing latitude. However, their contributions to SOC followed quadratic patterns with increasing latitude. Given its positive relationship with SOC content in all examined forests, microbial necromass seemed to play a more critical role in SOC accumulation than lignin phenols. Moreover, plant lignin and microbial necromass accumulation and their contributions to SOC were mainly influenced by the joint effects of climatic variables, microbial traits, and soil properties, but their importance was divergent. Specifically, the mean annual temperature (MAT) and soil phosphorus content were central to plant lignin accumulation, whereas MAT and the microbial richness: biomass ratio mainly controlled microbial necromass accumulation. These findings demonstrate that microbial necromass plays a more critical role than plant lignin in forest SOC accumulation and further highlight the importance of microbial traits in microbial necromass accumulation.

Unraveling the Ultrafast Photochemical Dynamics of Nitrobenzene in Aqueous Solution.

Nitroaromatic compounds are major constituents of the brown carbon aerosol particles in the troposphere that absorb near-ultraviolet (UV) and visible solar radiation and have a profound effect on the Earth's climate. The primary sources of brown carbon include biomass burning, forest fires, and residential burning of biofuels, and an important secondary source is photochemistry in aqueous cloud and fog droplets. Nitrobenzene is the smallest nitroaromatic molecule and a model for the photochemical behavior of larger nitroaromatic compounds. Despite the obvious importance of its droplet photochemistry to the atmospheric environment, there have not been any detailed studies of the ultrafast photochemical dynamics of nitrobenzene in aqueous solution. Here, we combine femtosecond transient absorption spectroscopy, time-resolved infrared spectroscopy, and quantum chemistry calculations to investigate the primary steps following the near-UV (λ ≥ 340 nm) photoexcitation of aqueous nitrobenzene. To understand the role of the surrounding water molecules in the photochemical dynamics of nitrobenzene, we compare the results of these investigations with analogous measurements in solutions of methanol, acetonitrile, and cyclohexane. We find that vibrational energy transfer to the aqueous environment quenches internal excitation, and therefore, unlike the gas phase, we do not observe any evidence for formation of photoproducts on timescales up to 500 ns. We also find that hydrogen bonding between nitrobenzene and surrounding water molecules slows the S1/S0 internal conversion process.

Spatio-temporal dynamics in microalgal communities in Arctic land-fast sea ice

Sea ice microalgae are an important source of energy for the polar marine food web, representing the primary carbon source prior to pelagic phytoplankton blooms. Here we investigate community dynamics of sea ice microalgal communities in land-fast sea ice across six different fjords in high-Arctic Svalbard, Norway, during Spring (April – May). We found that light (0.1 – 23% incoming PAR / 0.1 – 193 μmol photons m-2s-1) played a central role in determining community composition, with more diverse assemblages observed in sites with more light transmitted to the bottom ice community. In April, microalgal assemblages were similar when under-ice light transmittance was similar, independent of geographical location, however this light-derived separation of community structure was not evident in May. At all sites, assemblages were dominated by pennate diatoms, with the most abundant taxon being Nitzschia frigida. However, with increasing under-ice light transmittance, we saw an increase in the relative abundance of Dinophyceae, Navicula spp. and Thalassiosira spp.. A positive relationship between light and δ13C enrichment and C:N ratios in the ice algal biomass demonstrated the effect of light on the biochemical composition of ice algae. Light did not correlate with cell abundance or chlorophyll a concentration. With anticipated changes to Arctic sea ice extent and snow cover as a result of climate change, we will see shifts in the light transmitted to the bottom ice community. These shifts, whether caused by reduced light transmittance from increased snow cover or increased light transmittance from thinning ice, snow depth or increased rainfall, will likely alter sea ice microalgal community composition, which in turn, may influence the success of secondary production and biogeochemical cycling in polar waters.

Relationships between long-term exposure to major PM2.5 constituents and outpatient visits and hospitalizations in Guangdong, China

Ambient fine particulate matter (PM2.5) has attracted considerable attention due to its crucial role in the rising global disease burden. Evidence of health risks associated with exposure to PM2.5 and its major constituents is important for advancing hazard assessments and air pollution emission policies. We investigated the relationship between exposure to major constituents of PM2.5 and outpatient visits as well as hospitalizations in Guangdong Province, China, where 127 million residents live in a severe PM2.5 pollution environment. An approach that integrates the generalized weighted quantile sum (gWQS) regression with the difference-in-differences (DID) approach was used to assess the overall mixture effects and relative contributions of each constituent. We observed significant associations between long-term exposure to the mixture of PM2.5 constituents (WQS index) and outpatient visits (IR%, percentage increases in risk per unit WQS index increase:1.73, 95%CI: 1.72, 1.74) as well as hospitalizations (IR%:5.15, 95%CI: 5.11, 5.20). Black carbon (weight: 0.34) and nitrate (weight: 0.60) respectively exhibited the highest contributions to outpatient visits and hospitalizations. The overall mixture effects on outpatient visits and hospitalizations were higher with increased summer air temperatures (IR%: 7.54, 95%CI: 7.33, 7.74 and IR%: 9.55, 95%CI: 8.36, 10.75, respectively) or decreased winter air temperatures (IR%: 1.88, 95%CI: 1.68, 2.08 and IR%: 4.87, 95%CI: 3.73, 6.02, respectively). Furthermore, the overall mixture effects on outpatient visits and hospitalizations were significantly higher in populations with higher socioeconomic status (P < 0.01). It's crucial to address the primary sources of nitrate precursor substances and black carbon (mainly traffic-related and industrial-related air pollutants) and consider the complex interaction effects between air temperature and PM2.5 in the context of climate change. Of particular concern is the need to prioritize healthcare demands in economically disadvantaged regions and to address the health inequalities stemming from the uneven distribution of healthcare resources and PM2.5 pollution.

Oxygenation influences xylose fermentation and gene expression in the yeast genera Spathaspora and Scheffersomyces

BackgroundCost-effective production of biofuels from lignocellulose requires the fermentation of d-xylose. Many yeast species within and closely related to the genera Spathaspora and Scheffersomyces (both of the order Serinales) natively assimilate and ferment xylose. Other species consume xylose inefficiently, leading to extracellular accumulation of xylitol. Xylitol excretion is thought to be due to the different cofactor requirements of the first two steps of xylose metabolism. Xylose reductase (XR) generally uses NADPH to reduce xylose to xylitol, while xylitol dehydrogenase (XDH) generally uses NAD+ to oxidize xylitol to xylulose, creating an imbalanced redox pathway. This imbalance is thought to be particularly consequential in hypoxic or anoxic environments.ResultsWe screened the growth of xylose-fermenting yeast species in high and moderate aeration and identified both ethanol producers and xylitol producers. Selected species were further characterized for their XR and XDH cofactor preferences by enzyme assays and gene expression patterns by RNA-Seq. Our data revealed that xylose metabolism is more redox balanced in some species, but it is strongly affected by oxygen levels. Under high aeration, most species switched from ethanol production to xylitol accumulation, despite the availability of ample oxygen to accept electrons from NADH. This switch was followed by decreases in enzyme activity and the expression of genes related to xylose metabolism, suggesting that bottlenecks in xylose fermentation are not always due to cofactor preferences. Finally, we expressed XYL genes from multiple Scheffersomyces species in a strain of Saccharomyces cerevisiae. Recombinant S. cerevisiae expressing XYL1 from Scheffersomyces xylosifermentans, which encodes an XR without a cofactor preference, showed improved anaerobic growth on xylose as the primary carbon source compared to S. cerevisiae strain expressing XYL genes from Scheffersomyces stipitis.ConclusionCollectively, our data do not support the hypothesis that xylitol accumulation occurs primarily due to differences in cofactor preferences between xylose reductase and xylitol dehydrogenase; instead, gene expression plays a major role in response to oxygen levels. We have also identified the yeast Sc. xylosifermentans as a potential source for genes that can be engineered into S. cerevisiae to improve xylose fermentation and biofuel production.

Valorising Cassava Peel Waste Into Plasticized Polyhydroxyalkanoates Blended with Polycaprolactone with Controllable Thermal and Mechanical Properties

Approximately 99% of plastics produced worldwide were produced by the petrochemical industry in 2019 and it is predicted that plastic consumption may double between 2023 and 2050. The use of biodegradable bioplastics represents an alternative solution to petroleum-based plastics. However, the production cost of biopolymers hinders their real-world use. The use of waste biomass as a primary carbon source for biopolymers may enable a cost-effective production of bioplastics whilst providing a solution to waste management towards a carbon–neutral and circular plastics economy. Here, we report for the first time the production of poly(hydroxybutyrate-co-hydroxyvalerate) (PHBV) with a controlled molar ratio of 2:1 3-hydroxybutyrate:3-hydroxvalerate (3HB:3HV) through an integrated pre-treatment and fermentation process followed by alkaline digestion of cassava peel waste, a renewable low-cost substrate, through Cupriavidus necator biotransformation. PHBV was subsequently melt blended with a biodegradable polymer, polycaprolactone (PCL), whereby the 30:70 (mol%) PHBV:PCL blend exhibited an excellent balance of mechanical properties and higher degradation temperatures than PHBV alone, thus providing enhanced stability and controllable properties. This work represents a potential environmental solution to waste management that can benefit cassava processing industries (or other crop processing industries) whilst developing new bioplastic materials that can be applied, for example, to packaging and biomedical engineering.Graphical

Coupling pathway prediction and fluorescence spectroscopy to assess the impact of auxiliary substrates on micropollutant biodegradation.

Some bacteria can degrade organic micropollutants (OMPs) as primary carbon sources. Due to typically low OMP concentrations, these bacteria may benefit from supplemental assimilation of natural substrates present in the pool of dissolved organic matter (DOM). The biodegradability of such auxiliary substrates and the impacts on OMP removal are tightly linked to biotransformation pathways. Here, we aimed to elucidate the biodegradability and effect of different DOM constituents for the carbofuran degrader Novosphingobium sp. KN65.2, using a novel approach that combines pathway prediction, laboratory experiments,and fluorescence spectroscopy. Pathway prediction suggested that ring hydroxylation reactions catalysed by Rieske-type dioxygenases and flavin-dependent monooxygenases determine the transformability of the 11 aromatic compounds used as model DOM constituents. Our approach further identified two groups with distinct transformation mechanisms amongst the four growth-supporting compounds selected for mixed substrate biodegradation experiments with the pesticide carbofuran (Group 1: 4-hydroxybenzoic acid, 4-hydroxybenzaldehyde; Group 2: p-coumaric acid, ferulic acid). Carbofuran biodegradation kinetics were stable in the presence of both Group 1 and Group 2 auxiliary substrates. However, Group 2 substrates would be preferable for bioremediation processes, as they showed constant biodegradation kinetics under different experimental conditions (pre-growing KN65.2 on carbofuran vs. DOM constituent). Furthermore, Group 2 substrates were utilisable by KN65.2 in the presence of a competitor (Pseudomonas fluorescens sp. P17). Our study thus presents a simple and cost-efficient approach that reveals mechanistic insights into OMP-DOM biodegradation.

Molecular Signaling and Metabolic Responses during the Interaction between Human Keratinocytes (HaCaT) and the Dermatophyte Trichophyton rubrum.

Trichophyton rubrum is the leading causative agent of dermatophytosis worldwide. Keratinocytes are the first line of defense that drives an immune response against fungal invasion. Host-specific pattern recognition receptors (PRRs) recognize pathogen-associated molecular patterns (PAMPs) to trigger immunological pathways. Fungal cell wall components are the primary sources of fungal PAMPs, and some pathogens increase cell wall rearrangement to evade the immune system. Glycolysis and enhanced lactate levels are critical for improving host immune responses to fungal infections. Using reverse transcription-quantitative polymerase chain reaction (RT-qPCR), we evaluated the transcriptional responses of human genes involved in fungal recognition and glycolytic metabolism and fungal cell-wall-related genes in a co-culture model of human keratinocytes with T. rubrum. We observed the upregulation of several Toll-like receptors (TLRs), NOD-like receptors (NLRs), and glycolytic genes. Complementarily, we measured intra- and extracellular glucose levels and the increase in lactate production in the co-culture supernatant. We noted a distinct transcriptional regulation pattern of fungal cell-wall-related genes from fungal growth on keratin as the primary carbon source compared to co-culture with human keratinocytes. Our results showed new insights into the transcriptional adaptation of keratinocytes, particularly in regulating genes involved in sensing and metabolic processes, during the interaction with T. rubrum.