AbstractBackgroundDespite extensive research, it is still unknown how AD pathogenesis occurs and how this links into the development of the pathological Aβ and Tau aggregates in the brain. More recent evidence has indicated that microglia may play a key role in AD risk and pathogenesis. This comes from large cohort studies identifying genetic variants associated with late onset Alzheimer’s disease with immune related functions. Chronic activation of microglia is thought to cause them to exist in a pre‐activated or “primed” state resulting in them having a heightened response to immune stimuli such as lipopolysaccharide. Despite increasing investigation into the role of microglia in Alzheimer’s disease onset and progression there are few studies focussed on the epigenomic consequences of chronic immune stimulation. However, in order to study this it is first important to understand the epigenomic consequences of acute immune stimulation.MethodAn immortalized primary microglial cell line (SV40; Accegen) were plated and underwent one of three treatments; 24 hour exposure to 1 µg/mL LPS, 24 hour exposure to 1 µg/mL LPS followed by a 24 hour recovery period, or no treatment (control). DNA was collected from cells and DNA methylation was assessed using the IlluminaEPIC array. Using median absolute derivation, linear modelling and pathway analysis we identified loci undergoing dynamic methylation changes upon LPS challenge and the cellular pathways these loci are associated with.ResultThis study has identified methylomic variation associated with microglial exposure to LPS and recovery. We identified 173 significant loci with these loci being associated with pathways such as extracellular matrix organisation, enzyme activity and organelle membranes. We have also shown there are no changes to epigenetic or mitotic age upon immune stimulation.ConclusionWe have shown that there are epigenetic changes occurring upon acute microglial stimulation with LPS. These are changes occurring within pathways that are key to cellular function and response to response to infection. Finally we have shown that LPS exposure does not affect epigenetic or mitotic age. In the future it will be of interest to study DNA methylation changes in this microglia cell line after chronic exposure to LPS.
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