Primary Dissociation Pathways Research Articles

Protonation-Induced Tautomerization Lowers the Activation Barriers for N-Glycosidic Bond Cleavage of Thymidine and 5-Methyluridine

Synergistic infrared multiple photon dissociation (IRMPD) action spectroscopy experiments and electronic structure calculations revealed that both 2,4-dihydroxy tautomers and O2 protonated conformers of protonated thymidine, [dThd+H]+, and protonated 5-methyluridine, [Thd+H]+ coexist in the gas phase with the 2,4-dihydroxy tautomers dominating the population. In the current study, the kinetic energy dependence of the collision-induced dissociation behavior of [dThd+H]+ and [Thd+H]+ are examined in a guided ion beam tandem mass spectrometer. The primary dissociation pathways observed involve N-glycosidic bond cleavage leading to competitive elimination of either protonated or neutral thymine. The potential energy surfaces (PESs) for these N-glycosidic bond cleavage pathways are mapped via electronic structure calculations for the mixture of 2,4-dihydroxy tautomers and O2 protonated conformers of [dThd+H]+ and [Thd+H]+ populated in the IRMPD experiments. The activation energies and heats of reaction predicted for N-glycosidic bond cleavage at the B3LYP and MP2(full) levels of theory are compared to the measured values. The agreement between experiment and theory indicates that B3LYP provides better estimates of the energetics of the species along the PESs for N-glycosidic bond cleavage of [dThd+H]+ and [Thd+H]+ than MP2, and that the 2,4-dihydroxy tautomers, which are stabilized by strong hydrogen-bonding interactions, control the threshold dissociation behavior of [dThd+H]+ and [Thd+H]+.

On the Energy-specific Photodissociation Pathways of 14N2 and 14N15N Isotopomers to N Atoms of Different Reactivity: A Quantum Dynamical Perspective

Photodissociation of the nitrogen molecule in the vacuum ultraviolet (VUV) is a major source of reactive nitrogen atoms in the upper atmosphere of Earth and throughout the solar system. Recent experimental studies have revealed strong energy dependence of the VUV photodissociation branching ratios to the N(4S3/2)+N(2D J ) and N(4S3/2)+N(2P J ) product channels, the primary dissociation pathways in the 108,000–116,000 cm−1 energy region. This produces N(2D J ) and N(2P J ) excited atoms that differ significantly in their chemical reactivity. The branching ratios oscillate with increase in the VUV excitation energy. We use high-level ab initio quantum chemistry to compute the potential curves of 17 electronic excited states and their nonadiabatic and spin–orbit couplings. The dynamics follow the sequential evolution from the optically excited but bound singlets. Spin–orbit coupling enables transfer to the dissociative triplet and quintet states. We compute the photodissociation yields through the dense manifold of electronic states leading to both exit channels. The dynamical simulations accurately capture the branching oscillations and enable a detailed look into the photodissociation mechanism. The major contribution to the dissociation is through the two lowest 3Π u states. However, for both isotopomers, at about 110,000 cm−1 there is an abnormally low dissociation rate into the N(4S3/2)+N(2P J ) channel that enables comparable participation of triplet and quintet 5Π u electronic states. This leads to the first peak in the branching ratio. At higher energies, trapping of the population in the 33Π u bound triplet state occurs. This favors dissociation to the lower-energy N(4S3/2)+N(2D J ) channel and results in the observed second switch in branching ratios.

Direct Dynamics Simulations of Fragmentation of a Zn(II)-2Cys-2His Oligopeptide. Comparison with Mass Spectrometry Collision-Induced Dissociation.

Abnormalities in zinc metabolism have been linked to many diseases, including different kinds of cancers and neurological diseases. The present study investigates the fragmentation pathways of a zinc chaperon using a model peptide with the sequence acetyl-His1-Cys2-Gly3-Pro4-Tyr5-His6-Cys7 (analog methanobactin peptide-5, amb5). DFT/M05-2X and B3LYP geometry optimizations of [amb5-3H+Zn(II)]- predicted three lowest energy conformers with different chelating motifs. Direct dynamics simulations, using the PM7 semiempirical electronic structure method, were performed for these conformers, labeled a, b, and c, to obtain their fragmentation pathways at different temperatures in the range 1600-2250 K. The simulation results were compared with negative ion mode mass spectrometry experiments. For conformer a, the number of primary dissociation pathways are 11, 14, 24, 70, and 71 at 1600, 1750, 1875, 2000, and 2250 K, respectively. However, there are only 6, 10, 13, 14, and 19 pathways corresponding to these temperatures that have a probability of 2% or more. For conformer b, there are 67 pathways at 2000 K and 71 pathways at 2250 K. For conformer c, 17 pathways were observed at 2000 K. For conformer a, for two of the most common pathways involving C-C bond dissociation, Arrhenius parameters were calculated. The frequency factors and activation energies are smaller than those for C-C homolytic dissociation in alkanes due to increased stability of the product ions as a result of hydrogen bonding. The activation energies agree with the PM7 barriers for the C-C dissociations. Comparison of the simulation and experimental fragmentation ion yields shows the simulations predict double or triple cleavages of the backbone with Zn(II) retaining its binding sites, whereas the experiment exhibits single cleavages of the backbone accompanied by cleavage of two of the Zn(II) binding sites, resulting in b- and y-type ions.

Enantioselective Collision-Activated Dissociation of Gas-Phase Tryptophan Induced by Chiral Recognition of Protonated L-Alanine Peptides.

Enantioselective dissociation in the gas phase is important for enantiomeric enrichment and chiral transmission processes in molecular clouds regarding the origin of homochirality in biomolecules. Enantioselective collision-activated dissociation (CAD) of tryptophan (Trp) and the chiral recognition ability of L-alanine peptides (L-Ala n ; n=2-4) were examined using a linear ion trap mass spectrometer. CAD spectra of gas-phase heterochiral H+(D-Trp)(L-Ala n ) and homochiral H+(L-Trp)(L-Ala n ) noncovalent complexes were obtained as a function of the peptide size n. The H2O-elimination product was observed in CAD spectra of both heterochiral and homochiral complexes for n=2 and 4, and in homochiral H+(L-Trp)(L-Ala3), indicating that the proton is attached to the L-alanine peptide, and H2O loss occurs from H+(L-Ala n ) in the noncovalent complexes. H2O loss did not occur in heterochiral H+(D-Trp)(L-Ala3), where NH3 loss and (H2O+CO) loss were the primary dissociation pathways. In heterochiral H+(D-Trp)(L-Ala3), the protonation site is the amino group of D-Trp, and NH3 loss and (H2O+CO) loss occur from H+(D-Trp). L-Ala peptides recognize D-Trp through protonation of the amino group for peptide size n=3. NH3 loss and (H2O+CO) loss from H+(D-Trp) proceeds via enantioselective CAD in gas-phase heterochiral H+(D-Trp)(L-Ala3) at room temperature, whereas L-Trp dissociation was not observed in homochiral H+(L-Trp)(L-Ala3). These results suggest that enantioselective dissociation induced by chiral recognition of L-Ala peptides through protonation could play an important role in enantiomeric enrichment and chiral transmission processes of amino acids.

Tautomerization lowers the activation barriers for N-glycosidic bond cleavage of protonated uridine and 2'-deoxyuridine.

The gas-phase conformations of protonated uridine, [Urd+H](+), and its 2'-deoxy form, protonated 2'-deoxyuridine, [dUrd+H](+), have been examined in detail previously by infrared multiple photon dissociation action spectroscopy techniques. Both 2,4-dihydroxy tautomers and O4 protonated conformers of [Urd+H](+) and [dUrd+H](+) were found to coexist in the experiments with the 2,4-dihydroxy tautomers dominating the population. In the present study, the kinetic energy dependence of the collision-induced dissociation behavior of [Urd+H](+) and [dUrd+H](+) are examined using a guided ion beam tandem mass spectrometer to probe the mechanisms and energetics for activated dissociation of these protonated nucleosides. The primary dissociation pathways observed involve N-glycosidic bond cleavage leading to competitive elimination of protonated or neutral uracil. The potential energy surfaces (PESs) for these N-glycosidic bond cleavage pathways are mapped out via electronic structure calculations for the mixture of 2,4-dihydroxy tautomers and O4 protonated conformers of [Urd+H](+) and [dUrd+H](+) populated in the experiments. The calculated activation energies (AEs) and heats of reaction (ΔHrxns) for N-glycosidic bond cleavage at both the B3LYP and MP2(full) levels of theory are compared to the measured values. The agreement between experiment and theory indicates that B3LYP provides better estimates of the energetics of the species along the PESs for N-glycosidic bond cleavage than MP2, and that the 2,4-dihydroxy tautomers, which are stabilized by strong hydrogen-bonding interactions, predominantly influence the observed threshold dissociation behavior of [Urd+H](+) and [dUrd+H](+).

Effect of basic residue on the kinetics of peptide fragmentation examined using surface-induced dissociation combined with resonant ejection

In this work, resonant ejection coupled with surface-induced dissociation (SID) in a Fourier transform ion cyclotron resonance mass spectrometer is used to examine fragmentation kinetics of two singly protonated hexapeptides, RYGGFL and KYGGFL, containing the basic arginine residue and less basic lysine residue at the N-terminus. The kinetics of individual reaction channels at different collision energies are probed by applying a short ejection pulse (1ms) in resonance with the cyclotron frequency of a selected fragment ion and varying the delay time between ion-surface collision and resonant ejection while keeping total reaction delay time constant. Rice-Ramsperger-Kassel-Marcus (RRKM) modeling of the experimental data provides accurate threshold energies and activation entropies of individual reaction channels. Substitution of arginine with less basic lysine has a pronounced effect on the observed fragmentation kinetics of several pathways, including the b2 ion formation, but has little or no effect on formation of the b5+H2O fragment ion. The combination of resonant ejection SID, time- and collision energy-resolved SID, and RRKM modeling of both types of experimental data provides a detailed mechanistic understanding of the primary dissociation pathways of complex gaseous ions.

Base-Pairing Energies of Proton-Bound Dimers and Proton Affinities of 1-Methyl-5-Halocytosines: Implications for the Effects of Halogenation on the Stability of the DNA i-Motif.

(CCG)(n)•(CGG)(n) trinucleotide repeats have been found to be associated with fragile X syndrome, the most widespread inherited cause of mental retardation in humans. The (CCG)(n)•(CGG)(n) repeats adopt i-motif conformations that are preferentially stabilized by base-pairing interactions of noncanonical proton-bound dimers of cytosine (C(+)•C). Halogenated cytosine residues are one form of DNA damage that may be important in altering the structure and stability of DNA or DNA-protein interactions and, hence, regulate gene expression. Previously, we investigated the effects of 5-halogenation and 1-methylation of cytosine on the base-pairing energies (BPEs) using threshold collision-induced dissociation (TCID) techniques. In the present study, we extend our work to include proton-bound homo- and heterodimers of cytosine, 1-methyl-5-fluorocytosine, and 1-methyl-5-bromocytosine. All modifications examined here are found to produce a decrease in the BPEs. However, the BPEs of all of the proton-bound dimers examined significantly exceed those of Watson-Crick G•C, neutral C•C base pairs, and various methylated variants such that DNA i-motif conformations should still be preserved in the presence of these modifications. The proton affinities (PAs) of the halogenated cytosines are also obtained from the experimental data by competitive analysis of the primary dissociation pathways that occur in parallel for the proton-bound heterodimers. 5-Halogenation leads to a decrease in the N3 PA of cytosine, whereas 1-methylation leads to an increase in the N3 PA. Thus, the 1-methyl-5-halocytosines exhibit PAs that are intermediate.

Base-Pairing Energies of Protonated Nucleoside Base Pairs of dCyd and m(5)dCyd: Implications for the Stability of DNA i-Motif Conformations.

Hypermethylation of cytosine in expanded (CCG)n•(CGG)n trinucleotide repeats results in Fragile X syndrome, the most common cause of inherited mental retardation. The (CCG)n•(CGG)n repeats adopt i-motif conformations that are preferentially stabilized by base-pairing interactions of protonated base pairs of cytosine. Here we investigate the effects of 5-methylation and the sugar moiety on the base-pairing energies (BPEs) of protonated cytosine base pairs by examining protonated nucleoside base pairs of 2'-deoxycytidine (dCyd) and 5-methyl-2'-deoxycytidine (m(5)dCyd) using threshold collision-induced dissociation techniques. 5-Methylation of a single or both cytosine residues leads to very small change in the BPE. However, the accumulated effect may be dramatic in diseased state trinucleotide repeats where many methylated base pairs may be present. The BPEs of the protonated nucleoside base pairs examined here significantly exceed those of Watson-Crick dGuo•dCyd and neutral dCyd•dCyd base pairs, such that these base-pairing interactions provide the major forces responsible for stabilization of DNA i-motif conformations. Compared with isolated protonated nucleobase pairs of cytosine and 1-methylcytosine, the 2'-deoxyribose sugar produces an effect similar to the 1-methyl substituent, and leads to a slight decrease in the BPE. These results suggest that the base-pairing interactions may be slightly weaker in nucleic acids, but that the extended backbone is likely to exert a relatively small effect on the total BPE. The proton affinity (PA) of m(5)dCyd is also determined by competitive analysis of the primary dissociation pathways that occur in parallel for the protonated (m(5)dCyd)H(+)(dCyd) nucleoside base pair and the absolute PA of dCyd previously reported.

Base-Pairing Energies of Protonated Nucleobase Pairs and Proton Affinities of 1-Methylated Cytosines: Model Systems for the Effects of the Sugar Moiety on the Stability of DNA i-Motif Conformations

Expansion of (CCG)n·(CGG)n trinucleotide repeats leads to hypermethylation of cytosine residues and results in Fragile X syndrome, the most common cause of inherited intellectual disability in humans. The (CCG)n·(CGG)n repeats adopt i-motif conformations that are preferentially stabilized by base-pairing interactions of noncanonical protonated nucleobase pairs of cytosine (C(+)·C). Previously, we investigated the effects of 5-methylation of cytosine on the base-pairing energies (BPEs) using threshold collision-induced dissociation (TCID) techniques. In the present work, we extend our investigations to include protonated homo- and heteronucleobase pairs of cytosine, 1-methylcytosine, 5-methylcytosine, and 1,5-dimethylcytosine. The 1-methyl substituent prevents most tautomerization processes of cytosine and serves as a mimic for the sugar moiety of DNA nucleotides. In contrast to permethylation of cytosine at the 5-position, 1-methylation is found to exert very little influence on the BPE. All modifications to both nucleobases lead to a small increase in the BPEs, with 5-methylation producing a larger enhancement than either 1-methyl or 1,5-dimethylation. In contrast, modifications to a single nucleobase are found to produce a small decrease in the BPEs, again with 5-methylation producing a larger effect than 1-methylation. However, the BPEs of all of the protonated nucleobase pairs examined here significantly exceed those of canonical G·C and neutral C·C base pairs, and thus should still provide the driving force stabilizing DNA i-motif conformations even in the presence of such modifications. The proton affinities of the methylated cytosines are also obtained from the TCID experiments by competitive analyses of the primary dissociation pathways that occur in parallel for the protonated heteronucleobase pairs.

Photoionization and dissociation of the monoterpene limonene: mass spectrometric and computational investigation

The photoionization of the monoterpene limonene has been studied using tunable vacuum ultraviolet synchrotron radiation in the region from the threshold for ionization of the parent molecule up to 15.5 eV. The adiabatic ionization energy of limonene is derived from photoionization efficiency spectrum and found to be 8.27 eV, compared with the density functional theory calculations which yields a value of 8.08 eV (B3LYP/6-311++G). Primary dissociation pathways of the parent molecule ions are investigated by experimental observations and theoretical calculations. Most of the fragmentation channels occur via a rearrangement reaction prior to dissociation. Transition structures and intermediates for those isomerization processes are also determined.

Noncovalent Interactions of Ni+ with N-Donor Ligands (Pyridine, 4,4′-Dipyridyl, 2,2′-Dipyridyl, and 1,10-Phenanthroline): Collision-Induced Dissociation and Theoretical Studies

Kinetic-energy-dependent collision-induced dissociation (CID) of complexes of a variety of N-donor ligands (N-L) with Ni(+), Ni(+)(N-L)(x), is studied using guided ion beam tandem mass spectrometry. The N-donor ligands investigated include: pyridine, 4,4'-dipyridyl, 2,2'-dipyridyl, and 1,10-phenanthroline. For most of the Ni(+)(N-L)(x) complexes, CID results in endothermic loss of a single neutral N-L ligand as the primary dissociation pathway. Sequential dissociation of additional N-L ligands is observed at elevated energies for the pyridine and 4,4'-dipyridyl complexes containing more than one ligand. The cross-section thresholds for the primary dissociation pathways are interpreted to yield 0 and 298 K bond dissociation energies (BDEs) of the Ni(+)(N-L)(x) complexes after accounting for the effects of multiple ion-neutral collisions, the kinetic and internal energy distributions of the reactants, and their lifetimes for dissociation. Density functional theory calculations at the B3LYP/6-311+G(2d,2p)//B3LYP/6-31G* level are performed to obtain model structures, molecular parameters, and energetics for the neutral N-L ligands and the Ni(+)(N-L)(x) complexes. In general, theory is found to overestimate the strength of binding to the first N-L ligand, and underestimate the strength of binding to additional ligands. Trends in the sequential BDEs of the Ni(+)(N-L)(x) complexes are examined and compared to complexes of Ni(+), to several other ligands previously investigated. The trends in the sequential BDEs are primarily determined by the valence electronic configuration and the effects of sd-hybridization of Ni(+) but are also influenced by repulsive ligand-ligand interactions. Natural bond orbital analyses indicate that the binding in these complexes is primarily noncovalent.

Photodissociation dynamics of methyl formate at 193.3 nm: Branching ratios, kinetic-energy distributions, and angular anisotropies of products

We investigated the photodissociation dynamics of methyl formate-d (CH(3)OC(O)D) at 193.3 nm in a molecular-beam apparatus using undulator radiation as an ionization source. We measured kinetic-energy distributions, spatial angular anisotropies, and branching ratios of all photofragments. Fractions of energy release into product translation were calculated from the kinetic-energy distributions. Four primary dissociation pathways to asymptotes CH(3)O(X (2)E)+DCO(X (2)A(')), CH(3)O(X (2)E)+DCO(A (2)A(")), CH(3)OCO(X (2)A('))+D((2)S), and CH(3)OD(X (1)A('))+CO(X (1)Sigma(+)) were identified; their branching ratios were determined to be 0.73, 0.06, 0.13, and 0.08, respectively. The former two dissociation paths were discernible in the time-of-flight spectra of fragment CH(3)O with a signal at m/z=29. Nominal products DCO (A (2)A(")) and CH(3)OCO (X (2)A(')) were unobservable as DCO in state A dissociated to D((2)S)+CO(X (1)Sigma(+)) and internally hot CH(3)OCO (X (2)A(')) decomposed to CH(3)(X (2)A(2) ("))+CO(2)(X (1)A(1g)). Products DCO and CH(3)O have angular anisotropy parameter beta approximately -0.37 but other products have nearly isotropic angular distributions with /beta/<0.1. Nonadiabatic transitions might play an important role in fragmentation of methyl formate irradiated at 193.3 nm.

Photodissociation dynamics of vinyl fluoride (CH2CHF) at 157 and 193nm: Distributions of kinetic energy and branching ratios

Using photofragment translational spectroscopy and tunable vacuum-ultraviolet ionization, we measured the time-of-flight spectra of fragments upon photodissociation of vinyl fluoride (CH2CHF) at 157 and 193 nm. Four primary dissociation pathways--elimination of atomic F, atomic H, molecular HF, and molecular H2--are identified at 157 nm. Dissociation to C2H3 + F is first observed in the present work. Decomposition of internally hot C2H3 and C2H2F occurs spontaneously. The barrier heights of CH2CH --> CHCH + H and cis-CHCHF --> CHCH + F are evaluated to be 40+/-2 and 44+/-2 kcal mol(-1), respectively. The photoionization yield spectra indicate that the C2H3 and C2H2F radicals have ionization energies of 8.4+/-0.1 and 8.8+/-0.1 eV, respectively. Universal detection of photoproducts allowed us to determine the total branching ratios, distributions of kinetic energy, average kinetic energies, and fractions of translational energy release for all dissociation pathways of vinyl fluoride. In contrast, on optical excitation at 193 nm the C2H2 + HF channel dominates whereas the C2H3 + F channel is inactive. This reaction C2H3F --> C2H2 + HF occurs on the ground surface of potential energy after excitation at both wavelengths of 193 and 157 nm, indicating that internal conversion from the photoexcited state to the electronic ground state of vinyl fluoride is efficient. We computed the electronic energies of products and the ionization energies of fluorovinyl radicals.

Photofragment translation spectroscopy of ClN3 at 248 nm: Determination of the primary and secondary dissociation pathways

Photofragmentation translational spectroscopy was used to identify the primary and secondary reaction pathways in the KrF laser (248 nm) photodissociation of chlorine azide (ClN(3)) under collision-free conditions. Both the molecular channel producing NCl (X (3)Sigma,a (1)Delta) + N(2) and the radical channel producing Cl ((2)P(J)) + N(3) were analyzed in detail. Consistent with previously reported velocity map ion imaging experiments [N. Hansen and A. M. Wodtke, J. Phys. Chem. A 107, 10608 (2003)] a bimodal translational energy distribution is seen when Cl atoms are monitored at mz = 35(Cl(+)). Momentum-matched N(3) counterfragments can be seen at mz = 42(N(3) (+)). The characteristics of the observed radical-channel data reflect the formation of linear azide radical and another high-energy form of N(3) (HEF-N(3)) that exhibits many of the characteristics one would expect from cyclic N(3). HEF-N(3) can be directly detected by electron-impact ionization more than 100 mus after its formation. Products of the unimolecular dissociation of HEF-N(3) are observed in the mz = 14(N(+)) and mz = 28(N(2) (+)) data. Anisotropy parameters were determined for the primary channels to be beta = -0.3 for the NCl forming channel and beta = 1.7 and beta = 0.4 for the linear N(3) and HEF-N(3) forming channels, respectively. There is additional evidence for secondary photodissociation of N(3) and of NCl.

Photodecomposition of formohydroxamic acid. Matrix isolation FTIR and DFT studies

Primary dissociation pathways of formohydroxamic acid have been investigated in argon and xenon matrices. The irradiation of the HCONHOH/Ar(Xe) matrices with full output of an Xe arc lamp leads to the formation of hydrogen bonded HNCO–H2O and NH2OH–CO complexes. Two structures were identified for the isocyanic acid–water complex, in the first one HNCO is hydrogen bonded to an oxygen atom of the water molecule and in the second, water serves as a proton donor toward the nitrogen atom of HNCO. For the hydroxylamine–carbon monoxide complex the spectra prove the existence of the structure with the OH group attached to the carbon atom and also suggest the existence of the structure with the NH2 group interacting with the carbon atom. The identification of the products is confirmed by 15N isotopic substitution and by DFT calculations (at the B3LYP level of the theory with 6-311++G(2d,2p) basis set) of the structure and vibrational frequencies of the identified complexes.

Unimolecular Decomposition Pathways of Dimethyl Ether: An ab Initio Study

Primary dissociation pathways have been investigated for dimethyl ether by ab initio molecular orbital methods. Reactants, transition-state structures, and products were fully optimized up to the MP2/6-311G(2df,2p) level of theory. Relative energies have been calculated with the spin-projected PMP4 and CCSD(T) post-Hartree−Fock methods using the 6-311G(2df,2p) and the expanded 6-311++G(3df,3pd) basis sets. At the CCSD(T)/6-311++G(3df,3dp) level, the barrier height for C−O bond fission is predicted to be 81.1 kcal/mol, while that for C−H bond fission is predicted to be 93.8 kcal/mol. These theoretical results agree very well with the experimentally measured barrier heights for these two bond fission channels. However, two new primary dissociation pathways are predicted to be competitive with these bond fission processes. These findings are discussed in light of previous experimental results on dimethyl ether.

On the dissociation and conformation of gas-phase methonium ions

The dissociation pathways of both doubly and singly charged methonium ions, (CH 3) 3N + -(CH 2) n - +N(CH 3) 3·X − ( n = 6, 10; X = Br, I, and OAc), are measured using blackbody infrared radiative dissociation (BIRD) and SORI-CAD in a Fourier transform mass spectrometer. SORI-CAD of the doubly charged decamethonium ions results primarily in the formation of even electron ions by hydrogen rearrangements. In contrast, homolytic bond cleavage to form two odd electron ions is highly favored in the hexamethonium ion, presumably due to increased Coulomb repulsion in this ion. For BIRD of the singly charged salts, ions are mass selected and dissociated by heating the vacuum chamber to elevated temperatures. Under the low pressure conditions of our experiment, energy is transferred from the chamber walls to the ions by the absorption of blackbody radiation. From the temperature dependence of the unimolecular rate constants for dissociation, Arrhenius activation energies in the zero-pressure limit are obtained. The primary dissociation pathways correspond to counterion substitution reactions which result in loss of N(CH 3) 3 and CH 3X. For hexamethonium and decamethonium with X = Br or I, the branching ratios for these pathways differ dramatically; the ratio of loss of N(CH 3) 3 and CH 3Br is 3.8 and 0.4 for hexamethonium and decamethonium bromide, respectively. The hexamethonium acetate salt has a branching ratio of 0.1. The Arrhenius activation energies for hexamethonium (Br or I) and decamethonium (Br or I) are 0.9 and 1.0 eV, respectively. This value for hexamethonium acetate is 0.6 eV. Molecular dynamics simulations and Monte Carlo conformation searching are used to obtain the lowest energy structures of hexamethonium and decamethonium bromide. These calculations indicate that the methonium ion folds around the counterion to form a cyclic salt-bridge structure in which both quaternary nitrogens interact with the oppositely charged counterion. The significantly different branching ratios observed for these ions is attributed to the large change in orientation of the counterion with respect to the ammonium centers as the number of methylene groups in these ions increases. Similar ion conformational differences appear to explain the fragmentation for the OAc counter ion as well.

Dynamics of photochemical reactions: Simulation by quantum calculations for transition metal hydrides

AbstractThe photodissociation dynamics of some organometallic molecules in the lowest repulsive electronically states are reported for the following concurrent primary reactions: (i) the homolysis of a metal–hydrogen bond vs. the heterolytic loss of a carbonyl ligand in HCo(CO)4; (ii) the photoinduced elimination of molecular hydrogen vs. the loss of a carbonyl ligand in H2Fe(CO)4; and (iii) the photoinduced elimination of molecular hydrogen vs. the loss of a mesithylene ligand in H2Os(CO)Mes (Mes = C6H3(CH3))3. The dynamics are simulated quantum mechanically using a time‐dependent wavepacket propagation technique on potential energy surfaces obtained from CASSCF/CCI calculations for HCo(CO)4 and H2Fe(CO)4 and from SCF‐INO/MRCI calculations for H2Os(CO)Mes. This approach gives a rather detailed view of some important elementary processes that contribute to the photochemistry of these complexes. The nature of the photoactive excited states is determined without ambiguity, as well as the time scales, the branching ratio of the different primary dissociation pathways, and some features of the absorption spectra. © 1994 John Wiley &amp; Sons, Inc.

Primary and secondary dissociation pathways in the ultraviolet photolysis of Cl2O

The photodissociation of dichlorine monoxide (Cl2O) at 308, 248, and 193 nm was studied by photofragment translational energy spectroscopy. The primary channel upon excitation at 308 and 248 nm was Cl–O bond fission with production of ClO+Cl. A fraction of the ClO photoproducts also underwent spontaneous secondary dissociation at 248 nm. The center-of-mass translational energy distribution for the ClO+Cl channel at 248 nm appeared to be bimodal with a high energy component that was similar in shape to the 308 nm distribution and a second, low energy component with a maximum close to the threshold for the 2Cl+O(3P) channel. Observation of a bimodal distribution suggests that two pathways with different dissociation dynamics lead to ClO+Cl products. The high product internal energy of the second component raises the possibility that ClO is formed in a previously unobserved spin-excited state a 4Σ−. Following excitation at 193 nm, a concerted dissociation pathway leading to Cl2+O was observed in addition to primary Cl–O bond breakage. In both processes, most of the diatomic photofragments were formed with sufficient internal energy that they spontaneously dissociated. The time-of-flight distributions of the Cl2+O products suggest that these fragments are formed in two different channels Cl2(3Π)+O(3P) and Cl2(X 1Σ)+O(1D).

A comprehensive theoretical examination of primary dissociation pathways of formic acid

Primary dissociation pathways have been investigated for formic acid by ab initio molecular orbital methods. Reactant, transition state, and products were fully optimized with unrestricted Hartree–Fock and unrestricted second-order Mo/ller–Plesset wave functions. The activation energy for decarboxylation of formic acid (CO2+H2) is 65.2 kcal mol−1, while that for the dehydration process (CO+H2O) is 63.0 kcal mol−1. These theoretical results suggest that the decarboxylation and dehydration processes are competitive. The activation energy barrier for isomerization of formic acid to yield dihydroxymethylene is 73.7 kcal mol−1 and may be a competitive process. Free radical initiation processes are predicted to be minor.