Prevalent Species Research Articles

Cereal aphid species: their natural enemies and efficiency of Lysiphlebus testaceipes (Cresson, 1880) to control Rhopalosiphum maidis (Fitch, 1856)

AbstractCereal grains both for human consumption and animal feed are an essential component of global food systems. However, during production they are often targeted by various pest insects, including aphids. A survey was carried out from 2017 to 2021 in six cereal production sites in Tunisia to evaluate aphid diversity and identify natural enemies on Triticum turgidum subsp. durum (durum wheat), Hordeum vulgare (barley), Avena sativa (oat) and Triticum secale (triticale). Six aphid species belonging to four genera were recorded: Diuraphis noxia, Rhopalosiphum maidis, R. padi, Schizaphis graminum, Sitobion avenae and Sitobion fragariae. Among these, S. avenae and R. padi emerged as the most prevalent species across the majority of sites, infesting durum wheat, barley and triticale. Sc. graminum, R. maidis and D. noxia were less frequent, while S. fragariae was exclusively found on oat plants. Common aphid predators observed included Coccinella algerica, Hippodamia variegata and C. undecimpunctata, as well as syrphid flies such as Episyrphus balteatus and Sphaerophoria rueppellii. Lysiphlebus testaceipes was the sole parasitoid species detected, emerging exclusively from R. padi and R. maidis mummies. Furthermore, the study on the efficacy of L. testaceipes against R. maidis indicated that parasitism levels increased with the number of introduced parasitoid pairs. Aphid and natural enemy diversity were also evaluated.

Evaluating the Antifungal Potential of Cinnamaldehyde: A Study of its Efficacy against Candida Species

Candida species exist as commensals in nature, colonizing the mucous membranes, gastrointestinal tract, vagina as well as the skin and usually cause infections in immunocompromised patients. C. albicans are known to be the most prevalent Candida species associated with infections, while there has been a significant surge in the incidence of Non-Candida albicans Candida species (NCAC) recently. The recent occurrences of the antifungal resistance in Candida, especially in NCAC species are quite alarming which raises the need for a safe and efficient alternative antimycotic drug. This study analyses the efficacy of cinnamaldehyde against Candida species, which is known to cause the majority of the fungal infections in humans. Cinnamaldehyde is a natural antimicrobial compound derived from cinnamon and has demonstrated significant antimycotic properties. Antifungal susceptibility profiles of cinnamaldehyde against Candida species were studied by disc diffusion as well as by broth microdilution assays. The mean diameter of the inhibition zone (IZ) formed by direct contact and disc volatilization assays were 61.26 mM and 65.20 mM, respectively. Both the minimum inhibitory concentration (MIC) and the minimum fungicidal concentration (MFC) of cinnamaldehyde ranged from 16-256 mg/L with mean MIC of 60.61 mg/L and a mean MFC of 81.94 mg/L. Co-incubation of Candida cells with cinnamaldehyde resulted in the loss of viable cells within 4 hours of incubation. Cinnamaldehyde was found to exhibit both fungistatic and fungicidal properties, making it a potent natural alternative for conventional antifungal agents.

Macrolide resistance is pervasive in oral streptococci in the Belgian general population: a cross-sectional survey.

Background. Commensal streptococci are common inhabitants of the oral microbiome and regulate its structure and function in beneficial ways for human health. They can, however, also be opportunistic pathogens and act as a reservoir of resistance genes that can be passed on to other bacteria, including pathogens. Little is known about the prevalence of these commensals in parents and their children and their antimicrobial susceptibilities in the Belgian general population.Gap Statement. The macrolide susceptibility of commensal oral Streptococci in Belgium is unknown.Methods. We assessed the prevalence and azithromycin susceptibility of commensal streptococcal species in the parents (n=38) and children (n=50) of 35 families in Belgium.Results. The most frequently detected taxonomic grouping was Streptococcus mitis/oralis, which was detected in 78/181 (43.1%) of the children's isolates and 66/128 (51.6%) of the parents' isolates. Of the 311 isolates collected in this study, 282 isolates (90.7%) had an azithromycin MIC value greater than the breakpoint of 0.25 mg l-1 and 146 isolates (46.9%) had azithromycin MICs greater than 2 mg l-1. There was no difference in the azithromycin MIC distribution of all streptococcal isolates between children and parents. All individuals were colonized by streptococci with azithromycin MICs greater than 0.25 mg l-1, and 87.5% of individuals had streptococci with MICs greater than 2 mg l-1.Interpretation. The most prevalent species identified in both age groups was S. mitis/oralis. All individuals harboured streptococci with macrolide resistance. This highlights the need for additional antimicrobial stewardship initiatives to reduce the consumption of macrolides in the general population.

Clinical applications of immunoglobulin G against different individual Aspergillus species for the diagnosis of chronic pulmonary aspergillosis among at-risk populations

ABSTRACT Aspergillus fumigatus-specific IgG is often used as a diagnostic test for chronic pulmonary aspergillosis (CPA), but few studies have evaluated the performance and serology of IgGs from species other than A. fumigatus. In this study, we evaluated the serology and performance of different Aspergillus species-specific IgG antibodies in patients with CPA and at-risk populations and whether different Aspergillus species-specific IgGs could be of clinical utility and aid in the diagnosis of CPA caused by all Aspergillus species. A total of 187 participants were included between 2020 and 2022 (12 with CPA, 75 with old tuberculosis [TB], 45 with active TB and 55 with bronchiectasis). We measured the serum Aspergillus fumigatus, flavus, terreus, niger-specific, and mixed Aspergillus IgG levels (Phadia ImmunoCap). The correlation was the strongest between A. fumigatus and A. niger (Spearman’s rank: 0.940), followed by A. niger and A. flavus (Spearman’s rank: 0.915). A. terreus-specific IgG was less strongly correlated with the other three Aspergillus species-specific IgG (Spearman’s rank: 0.828–0.849). A. flavus (4 of 6, 67%) was the dominant species. Using the at-least-one-positive approach, the highest performance was obtained when A. fumigatus and A. flavus IgGs were used (sensitivity, 0.75; specificity, 0.84). Significant cross-reactivity exists among different Aspergillus-species IgGs although the correlation may be less significant for A. terreus. In addition to the commonly used A. fumigatus IgG test, IgGs specific to local prevalent Aspergillus species may provide additional clinical utility.

Grading Habitats for Ticks by Mapping a Suitability Index based on Remotely Sensed Data and Meta® population dataset in Aosta Valley, NW Italy.

Ticks represent a reservoir of zoonotic pathogens, and their numbers are increasing largely in wildlife. This work is aimed at producing maps of suitable habitats for ticks in Aosta Valley, Italy based on multitemporal EO data and veterinary datasets (tick species and distribution in wild hosts). EO data were processed in Google Earth Engine considering the following inputs: A) Growing Degree Ticks (GDT), B) NDVI from MOD09GA, C) NDVI entropy, D) distance from water bodies, E) topography, F) rainfalls from CHIRPS as monthly composites along the 2020, 2021 and 2022 years. Ticks were collected from hunted, injured, and found-dead wild animals ( Sus scrofa, Capreolus capreolus, Rupicapra rupicapra, Cervus elaphus); they were labeled at species level using taxonomic keys. Between September 2020 and December 2022, a total of 90 ticks were collected from 89 wild animals. Ixodes ricinus was the most prevalent tick species, followed by Dermacentor marginatusand Dermacentor spp. Molecular analyses demonstrated the presence of Anaplasma spp., B. burgdorferi sensu lato and Rickettsia spp. pathogens in infected ticks. To assess human population potential exposure to tick Meta® population dataset was used. In conclusion this study shows the potentialities of Remote sensing improving the technological transfer to the veterinarian sector.

"Molecular Characterization of Extended Spectrum Beta-Lactamase Resistance in Pediatric Shigella Isolates in Egypt".

Shigellosis is a major cause of morbidity and mortality among children, especially in developing countries. The increased extended-spectrum beta-lactamase (ESBL) resistance in Shigella poses a challenge for effective treatment. To examine the antibiotic resistance and ESBL profile of Shigella isolates from children with acute diarrhea. Shigella was isolated from stool cultures from pediatric patients suffering from acute diarrhea. The isolates were identified by bacteriological tests, serotyping, and multiplex polymerase chain reaction (PCR). The antimicrobial resistance was examined by disc diffusion. Phenotypic tests and PCR examined the ESBLs and CTX-M, SHV, and TEM genes. A total of 100 Shigella (10% prevalence rate) were isolated. The S. sonnei and S. dysenteries were the most prevalent species (33% and 31%, respectively), followed by S. flexneri (27%), and only 9% were S. boydii. The isolates had complete resistance (100%) to ampicillin. There was lower resistance to ciprofloxacin (24%), and no resistance to imipenem. By phenotypic tests, 54% of isolates had ESBL. By PCR, bla-CTX-M gene was the most prevalent (50%), followed by bla-TEM (48.1%). Only one isolate (1.9%) had the bla-SHV gene. The alarmingly high rates of antibiotic resistance and ESBL resistance among Shigella spp highlight the urgent need to restrict the unguided use of these drugs. Continuous monitoring of local and global antibiotic resistance patterns is required to prevent the spread of resistance.

Mycotoxigenic Fusarium species and zearalenone concentration in commercial maize kernels in northern Ghana.

The fungal genus Fusarium contains many toxigenic pathogens of maize with associated yield losses, reduction of grain quality, and accumulation of mycotoxins in harvested grains. To determine zearalenone (ZEN) concentration and identify the various Fusarium species in commercial maize grains, a survey of 75 maize samples, collected from 11 market centers in the five regions in northern Ghana was identified based on morphological characteristics, sequence analysis of the internal transcribed spacer region, and polymerase chain reaction using species-specific primers. ZEN levels were determined using HPLC. ZEN contamination was recorded in 33.3% of the maize samples, with concentrations ranging from 0.61 to 3.05µg/kg. Based on VERT1/2 and TEF 1-α sequencing, F. verticillioides was the most prevalent species in the studied samples: 40.35% from the Upper East Region, 28.07% from the North East Region, 19.30% from the Upper West Region, 10.53% from the Savannah Region, and 1.75% for the Northern Region. Other fungal species found were F. equiseti and F. solani. A higher number of the Fusarium isolates were found in white maize (609 isolates from 27 samples) compared to yellow maize (225 isolates from 23 samples).

Richness and abundance of ticks associated with domestic animals at different altitudes in Southern Mexico

The objective of this study was to determine the richness, abundance, and altitudinal distribution of ticks collected from domestic animals in five municipalities and sixteen distinct communities along the Pacific coast of southern Mexico in Chiapas. Ticks were sampled from dogs, horses, and cows in each range. A total of 311 hosts were sampled, of which 264 (85 %) were dogs, 26 (8 %) were horses, and 21 (7 %) were cows. Of these, 83 (26 %), 17 (5 %), and 7 (2 %) hosts were infested, respectively. A total of 583 ticks were collected, representing four genera and six species. The most prevalent species was Rhipicephalus linnaei (68.61 %, n = 400), followed by Rhipicephalus microplus (0.51 %, n = 3), Amblyomma ovale (1.71 %, n = 10), Amblyomma mixtum (1.71 %, n = 10), Ixodes ci. boliviensis (2.22 %, n = 13), and Dermacentor dissimilis (25.21 %, n = 147). Of the identified ticks, A. mixtum, A. ovale, R. microplus, and R. linnaei were distributed at elevations between 0 and 1000 m, while at elevations between 1000 and 2000 m, only the species I. ci. boliviensis and D. dissimilis were found. The characteristics of each locality are discussed in order to explain the abundance of ticks and to assess their potential risk as vectors of public health pathogens.

Comprehensive analysis of particulate matter, gaseous pollutants, and microbiological contamination in an international chain supermarket

Indoor environmental quality is of utmost importance since urban populations spend a large proportion of their life in confined spaces. Supermarkets offer a wide range of products and services that are prone to emitting several air pollutants. This study aimed to perform a comprehensive characterisation of the indoor and outdoor air quality in a multinational supermarket, encompassing not only criteria parameters but also unregulated pollutants of concern. Monitoring included measurements of comfort parameters, CO2, multiple gaseous pollutants, particulate matter (PM10) and bioburden. PM10, volatile organic compounds (VOCs) and carbonyls were subject to chemical speciation. Globally, the supermarket presented CO2, VOCs, and PM10 values below the limits imposed by international regulations. The PM10 concentration in the supermarket was 33.5±23.2 μg/m3, and the indoor-to-outdoor PM10 ratio was 1.76. Carbonaceous constituents represented PM10 mass fractions of 21.6% indoors and 15.3% outdoors. Due to the use of stainless-steel utensils, flour and fermentation processes, the bakery proved to be a pollution hotspot, presenting the highest concentrations of PM10 (73.1±9.16 μg/m3), PM10-bound elements (S, Cl, K, Ca, Ti, and Cr) and acetaldehyde (42.7 μg/m3). The maximum tetrachloroethylene level (130 μg/m3) was obtained in the cleaning products section. The highest values of colony-forming units of bacteria and fungi were recorded in the bakery, and fruit and vegetable section. The most prevalent fungal species was Penicillium sp., corresponding to 56.9% of the total colonies. In addition, other fungal species/sections with toxicological or pathogenic potential were detected (Aspergillus sections Aspergilli, Circumdati, Flavi, Mucor and Fusarium sp.).

Impact of D-allulose consumption on Enteric pathogens in human gut Microbiota: A randomized controlled trial study

D-allulose, a rare sugar recognized as Generally Recognized as Safe, has emerged as a potential alternative to sucrose. Despite its growing popularity, research on its effects on the human gut microbiota, including pathogens, remains scarce. To address these concerns, we conducted a 12-week randomized, double-blind, parallel, placebo-controlled study assessing D-allulose’s safety on gut microbiota in humans. Participants consumed 15 g/day of D-allulose or sucralose (placebo) for 12 weeks. Gut microbiota analysis in stool samples, performed through shotgun metagenomics sequencing before and after the intervention, evaluated microbial diversity, taxonomy of prevalent species, changes in pathogenic bacteria (Clostridium difficile, Helicobacter hepaticus, Klebsiella pneumoniae, Bacteroides fragilis, Staphylococcus aureus, and Salmonella enterica), and short-chain fatty acid production. Our findings revealed no significant differences in microbial diversity, pathogenic bacteria levels, or short-chain fatty acid production, suggesting that D-allulose consumption is safe and does not adversely affect the gut microbiome or pathogen presence.

Prevalence, Risk Factors, and Antimicrobial Resistance of Staphylococcus and Streptococcus Species Isolated from Subclinical Bovine Mastitis.

Subclinical mastitis (SCM) is a prevalent serious disease among dairy cows worldwide. It poses a significant challenge to the dairy industry, animal welfare, and a threat to public health. The present study aimed to investigate the molecular detection, prevalence, and antimicrobial resistance of Staphylococcus spp. and Streptococcus spp. isolated from raw composite milk samples obtained from SCM dairy cattle in Bangladesh. A total of 612 quarters milk samples obtained from 153 cows were analyzed for SCM using the California Mastitis Test. Bacterial isolation and identification were carried out and bacterial species were confirmed using molecular polymerase chain reaction methods. Antimicrobial susceptibility testing was performed using disc diffusion method. The findings revealed that the prevalence of SCM was 70.3% (26/37), 35.95% (55/153), and 23.04% (141/612) in the herd, cow, and quarter levels, respectively. Among the positive samples, 92.7% (51/55) were Staphylococcus spp. (S. aureus, S. chromogenes, and S. simulans) and the remaining isolates were 7.3% (4/55) Streptococcus spp. (Streptococcus agalactiae and Streptococcus dysgalactiae). The most prevalent species was S. chromogenes, accounting for 67.3% (37/55). Antimicrobial susceptibility testing showed that 65.5% of isolates were susceptible to cefoxitin, whereas, 89.1% were resistant to penicillin. Overall, 12 isolates (21.8%) out of 55 were resistant to more than three classes of antimicrobials and were defined as multidrug-resistant isolates. Methicillin-resistance gene was detected in 61.1% of the cefoxitin-resistant isolates. A multivariate logistic regression analysis identified five potential risk factors including the lack of post-milking teat disinfection (OR: 3.06), absence of immediate feeding after milking (OR: 9.81), poor udder hygiene (OR: 7.83), tick infestation (OR: 13.76), and absence of dry cow therapy (OR: 3.31). The findings of the current study underscore the urgent requirement for targeted interventions, considering the identified factors to effectively manage and control SCM in dairy cows.

Possibilities of competitive displacement of Bactrocera dorsalis (Hendel) by Bactrocera zonata (Saunders) (Tephritidae: Diptera) in guava Psidium guajava ecosystem in Sudan

Oriental fruit fly (OFF) Bactrocera dorsalis and peach fruit fly (PFF) Bactrocera zonata are the most notorious pests that invaded Sudan in 2005 and 2012, respectively, causing severe losses and hindering horticultural production and exports. Prior to 2012, OFF was the most abundant fly in guava orchards in Gezira State. Monitoring fruit flies to determine species composition, seasonality, and possibilities of competitive displacement was conducted in two guava (Psidium guajava) orchards in Gezira State; Fadasi and Gezirat Elfil, using food bait attractant and rearing flies from infested fruits..Longevity and survival percentages of developmental stages of the two species were also determined. Monitoring fly populations using Torula yeast and rearing of fruit flies from guava fruits revealed that OFF and PFF were the most prevalent species in guava ecosystem at both sites. At the Fadasi site, PFF was the predominant species representing (99.3%) of the guild of the trapped flies with an infestation level of 99.6%) flies/kg of guava fruits. At G. Elfil, OFF comprised 80.8% of the trapped flies with infestation level ca 53.6% while 19.2% of trapped flies were B. zonata with 46.4% infestation level. The high percentage of trapped OFF at G. Elfil might be attributed to multi-cropping system in the area. Developmental stages of PFF were shorter than that of OFF by 9.2 days, while its survival percentage was higher than that of OFF for all developmental stages. Competitive displacement of OFF by PFF in guava orchards at Fadasi site may have occurred as a result of the mono-cropping system, short developmental period, and high survival percentage of developmental stages of PFF on guava compared to that of OFF.

Environmental determinants of venom variability in captive scorpions: A comprehensive analysis of diet, temperature, and humidity effects

This study examines the effects of environmental conditions on venom production in four prevalent scorpion species in Morocco: Androctonus amoreuxi, Androctonus mauretanicus, Buthus mardochei, and Scorpio maurus. The research focuses on how climatic factors such as temperature, humidity, and diet—specifically mealworm consumption—affect physical parameters including size and weight, and ultimately venom yield. We conducted a comprehensive investigation involving the capture, acclimatization, and systematic venom extraction from 480 scorpions. Our findings indicate considerable variations in venom volumes, with Scorpio maurus showing a reduced yield compared to Androctonus amoreuxi. Key determinants of venom production were identified as humidity and dietary intake, pointing to significant implications for interspecific diversity and acclimatization processes. These insights have crucial implications for medical and pharmaceutical applications, emphasizing the need for species-specific husbandry protocols to optimize venom extraction for therapeutic use.

Microbiome Evolution of Brewer’s Spent Grain and Spent Coffee Ground Solid Sidestreams Under Industrial Storage Conditions

Brewer’s spent grain (BSG) and spent coffee ground (SCG) are solid sidestreams from beverage production increasingly being upcycled into food, feed and other value-added products. These solid sidestreams are prone to microbial spoilage, negatively impacting their upcycling potential. Three samples each of BSG and SCG were obtained from generators and recycling facilities in Singapore, and their chemical, elemental, and microbial composition was characterized. The spoilage mechanisms were investigated during storage under anaerobic and aerobic conditions. Bacterial loads of sidestreams were low from craft brewery and café sources (<1 and 3.53 ± 0.03 log10 CFU/g) and high from recycling facilities (>6 log10 CFU/g). The microbiome of BSG from recycling facilities was dominated by Bacilli, and B. coagulans was identified as the most prevalent species. SCG from recycling facilities was dominated by lactic acid bacteria, with L. panis being the most prevalent species. Storage up to 14 days under anaerobic conditions led to further bacterial proliferation mainly by Bacilli, lactic acid bacteria, and acetic acid bacteria, while aerobic storage led to extensive fungal contamination, including potential aflatoxin-producing Aspergillus flavus. The results shed light on the spoilage mechanisms, while highlighting the short shelf-life and food safety risks of BSG and SCG to inform valorization strategies.

Removal of airborne particulate matter by evergreen tree species in Dhaka, Bangladesh

Urban air quality stands as a pressing concern in cities globally, with airborne particulate matter (PM) emerging as a significant threat to human health. An investigation was carried out to examine the potential of four prevalent evergreen roadside tree species grown at different locations in Dhaka to capture PM using their leaves. The distribution of PM by mass and quantity in Dhaka are presented for the first time for Bangladesh and these results will also be applicable to countries with similar climates and tree species. Separate gravimetric analyses were carried out to quantify PM in three different size ranges (0.2–2.5 μm, 2.5–10 μm, and 10–100 μm) accumulated on surfaces and trapped within waxes by using the rinse and weigh method. The method is validated for the first time through SEM-EDX analysis, which confirmed that the increase in weight from chloroform-rinsed leaves was exclusively attributable to particle deposition on the filter. The chemical composition of the deposited PM2.5 was analyzed quantitatively by determining the concentration of twenty-five trace elements employing ICP-MS. SEM-EDX analysis revealed the significance of leaf microstructural traits in effectively capturing PM. Significant variations in the deposition of PM were found among different species for two PM categories (surface PM and wax-embedded PM) and three size fractions (large, coarse, and fine) (one-way ANOVA; p < 0.05). The quantity of wax retained on the foliage of trees documented in these locations also varied (p < 0.05). Among the species studied, Ficus benghalensis demonstrated a greater ability to retain PM. Mangifera indica was identified to be the most efficient collector of wax-related PM and appears to be the ideal species for traffic-heavy areas distinguished by high concentrations of organic compounds from vehicle emissions.

Ecological success of extreme halophiles subjected to recurrent osmotic disturbances is primarily driven by congeneric species replacement.

To understand how extreme halophiles respond to recurrent disturbances, we challenged the communities thriving in salt-saturated (~36% salts) ~230L brine mesocosms to repeated dilutions down to 13% (D13 mesocosm) or 20% (D20 mesocosm) salts each time mesocosms reached salt saturation due to evaporation (for 10 and 17cycles, respectively) over 813days. Depending on the magnitude of dilution, the most prevalent species, Haloquadratum walsbyi and Salinibacter ruber, either increased in dominance by replacing less competitive populations (for D20, moderate stress conditions), or severely decreased in abundance and were eventually replaced by other congeneric species better adapted to the higher osmotic stress (for D13, strong stress conditions). Congeneric species replacement was commonly observed within additional abundant genera in response to changes in environmental or biological conditions (e.g. phage predation) within the same system and under a controlled perturbation of a relevant environmental parameter. Therefore, a genus is an ecologically important level of diversity organization, not just a taxonomic rank, that persists in the environment based on congeneric species replacement due to relatively high functional overlap (gene sharing), with important consequences for the success of the lineage, and similar to the success of a species via strain-replacement. Further, our results showed that successful species were typically accompanied by the emergence of their own viral cohorts, whose intra-cohort diversity appeared to strongly covary with, and likely drive, the intra-host diversity. Collectively, our results show that brine communities are ecologically resilient and continuously adapting to changing environments by transitioning to alternative stable states.

A first record of a suspected intestinal myiasis caused by Muscina stabulans (Fallén 1817) (Diptera: Muscidae) in Southern South America.

We report a case of a suspected intestinal myiasis of a child from Southeast Argentina. Diptera larvae were sampled by a physician from the nappy worn by the child and submitted for examination and identification to the Laboratorio de Artrópodos (Universidad Nacional de Mar del Plata). Based on diagnosis of the anterior and posterior spiracles and mouthparts, the larvae were identified as the false stable fly Muscina stabulans (Fallén, 1817) (Diptera: Muscidae). A comparison of diagnostic characters between Argentinean and European third instars of this species is presented. Muscina stabulans is a prevalent species in the district of General Pueyrredón, Buenos Aires province, where the case occurred. Its abundance in the area coincidentally peaked at the time of the infestation. This is the 1st report of M. stabulans as a suspect of intestinal myiasis for the whole of the southern cone of South America (Chile and Argentina).

Molecular characterisation of virulence genes in bacterial pathogens from daycare centres in Ile-Ife, Nigeria: implications for infection control

BackgroundDaycare centres play a critical role in early childhood development but are high-risk environments for infectious disease transmission due to close physical contact, shared toys, inadequate hygiene, and poor ventilation. These risks are especially concerning in low- and middle-income countries (LMICs) like Nigeria, where resources for infection control may be limited. This study aimed to identify and characterise virulence genes in bacterial isolates from daycare centres in Ile-Ife, Nigeria, to assess infection risks.MethodsBetween November 2017 and July 2019, 233 samples were collected from 76 children, 33 daycare workers, and 124 fomites in 17 daycare centres. The bacterial isolates were analysed using conventional PCR and RAPD analysis to detect the presence of virulence genes. The frequency of crucial virulence genes and the prevalence of each bacterial species were recorded.ResultsKey virulence genes were detected, including fimH in Klebsiella species (22.73% of Gram-negative isolates), algD in Pseudomonas aeruginosa (50%), and icaA and cna in Staphylococcus aureus (16.67%). Staphylococcus aureus was the most prevalent species (35%), followed by Klebsiella (28%) and Pseudomonas aeruginosa (20%).ConclusionThis study highlights the presence of virulent bacterial pathogens in daycare environments, posing a severe infection risk to children. To mitigate these risks, it is essential to implement enhanced infection control measures, such as regular microbial screening, improved hand hygiene practices, and disinfection protocols for fomites. Training programs for daycare workers on hygiene practices and routine monitoring could also significantly reduce infection transmission. These interventions are vital for safeguarding the health of daycare children in Nigeria and similar settings globally.

Evaluation of metagenomic next-generation sequencing (mNGS) combined with quantitative PCR: cutting-edge methods for rapid diagnosis of non-invasive fungal rhinosinusitis.

Fungal rhinosinusitis is a significant and growing health concern in arid regions, with an increasing incidence over recent decades. Without timely and appropriate management, it can lead to severe complications, including potential intracranial spread. This study aims to establish efficient and rapid diagnostics for non-invasive fungal rhinosinusitis (FRS), addressing the challenge of its difficult-to-culture diagnosis. Twenty-eight patients suspected of FRS were studied using endoscopic sinus surgery to obtain tissue samples for histopathology, direct microscopy, fungal culture, quantitative PCR (qPCR) and metagenomic next-generation sequencing (mNGS) detection. A patented qPCR targeting prevalent Aspergillus species was evaluated. The patient cohort had a male-to-female ratio of 9:14, with disease duration up to 50 years. Histopathologically, 23 out of 28 cases were positive. Fungal culture exhibited a sensitivity of 21.74%, with one false positive. qPCR and mNGS showed 100% sensitivity and specificity, with a 100% consistency rate for identification at the species level (23/23), and potential detection of cases with co-infections. The most common pathogen was A. flavus, followed by A. fumigatus and A. niger. Two cases involved mixed infections of A. fumigatus and A. flavus. qPCR and mNGS proved effective in rapidly identifying fungi from fresh sinus tissue that are challenging to culture, surpassing conventional methods. However, further evaluation and optimization with a larger cohort of patients are necessary. Histopathology is still recommended to confirm the clinical significance of the detected fungal species.

Prevalence of domestic chicken ectoparasites in the east Goejam, Amhara, Ethiopia

Ectoparasites significantly impact the health and productivity of chickens, both directly and indirectly. From October 2022 to September 2023, a cross-sectional study was conducted in the East Gojam Zone of the Amhara region, North West Ethiopia to identifying the ectoparasite species infesting free-ranged chicken. Additionally, a questionnaire survey was used to assess farmers knowledge and attitudes towards control practices. The purposeful sampling method was utilized to select study districts and peasant associations (PAs), while the simple random sampling method was employed to select interviewed respondents (n = 90) and sampled chickens. Samples were collected from 384 chickens through visual examination of their entire bodies, including skin scraps, to expose any ectoparasites present. The ectoparasites were then identified according to diagnostic guidelines. Out of the 384 local chickens examined, 184 (47.9 %) were found to harbor one or more of ectoparasites. Four genera of ectoparasites were identified, with louse (Menacanthus stramineus) most prevalent species (N = 133/184) 72.3 % and fleas (Ceratophyllidae) being the least prevalent N = 3 (1.6 %). Lice species included Menacanthus stramineus (N = 98) 53.3 %, Lipeurus caponis (N = 15) 8.2 %, Goniocotes gallinae 7 (3.8 %), Menopon gallinae (N = 7) 3.8 %, and Cuclotogaster heterographus (N = 6) 3.3 %. Additionally, one species of ticks (Argas persicus, (N = 9) 4.9 %, mites (Knemidocoptes mutans, (N = 5) 2.7 %, and fleas (Echidnophaga gallinacean, (N = 3) 1.6 % were found. Statistically significant differences (p = 0.040) in prevalence were observed between age groups, breeds, management systems, and study areas. However, the prevalence was not statistically significant (p > 0.05) between sex categories. Results from the questionnaire survey revealed that most poultry farmers were female (N = 74) 82.2 % and illiterate (N = 52) 57.8 %. A majority of respondents (N = 55) 61.1 % lacked information regarding ectoparasite infestations in chickens, while (N = 36)36.7 % of respondents fed their chickens supplementary feed once a day. This study highlights the prevalence of ectoparasite infestations among chickens in the studied areas. Therefore, it is recommended to raise awareness among the community about control practices and conduct further studies focusing on the impacts of ectoparasites.