Presence Of Symbiotic Bacteria Research Articles

Ascarosides and Symbiotic Bacteria of Entomopathogenic Nematodes Regulate Host Immune Response in Galleria mellonella Larvae

Insects protect themselves through their immune systems. Entomopathogenic nematodes and their bacterial symbionts are widely used for the biocontrol of economically important pests. Ascarosides are pheromones that regulate nematode behaviors, such as aggregation, avoidance, mating, dispersal, and dauer recovery and formation. However, whether ascarosides influence the immune response of insects remains unexplored. In this study, we co-injected ascarosides and symbiotic Photorhabdus luminescens subsp. kayaii H06 bacteria derived from Heterorhabditis bacteriophora H06 into the last instar larvae of Galleria mellonella. We recorded larval mortality and analyzed the expressions of AMPs, ROS/RNS, and LPSs. Our results revealed a process in which ascarosides, acting as enhancers of the symbiotic bacteria, co-induced G. mellonella immunity by significantly increasing oxidative stress responses and secreting AMPs (gallerimycin, gloverin, and cecropin). This led to a reduction in color intensity and the symbiotic bacteria load, ultimately resulting in delayed host mortality compared to either ascarosides or symbiotic bacteria. These findings demonstrate the cross-kingdom regulation of insects and symbiotic bacteria by nematode pheromones. Furthermore, our results suggest that G. mellonella larvae may employ nematode pheromones secreted by IJs to modulate insect immunity during early infection, particularly in the presence of symbiotic bacteria, for enhancing resistance to invasive bacteria in the hemolymph.

The hidden genomic diversity of ciliated protists revealed by single-cell genome sequencing

BackgroundCiliated protists are a widely distributed, morphologically diverse, and genetically heterogeneous group of unicellular organisms, usually known for containing two types of nuclei: a transcribed polyploid macronucleus involved in gene expression and a silent diploid micronucleus responsible for transmission of genetic material during sexual reproduction and generation of the macronucleus. Although studies in a few species of culturable ciliated protists have revealed the highly dynamic nature of replicative and recombination events relating the micronucleus to the macronucleus, the broader understanding of the genomic diversity of ciliated protists, as well as their phylogenetic relationships and metabolic potential, has been hampered by the inability to culture numerous other species under laboratory conditions, as well as the presence of symbiotic bacteria and microalgae which provide a challenge for current sequencing technologies. Here, we optimized single-cell sequencing methods and associated data analyses, to effectively remove contamination by commensal bacteria, and generated high-quality genomes for a number of Euplotia species.ResultsWe obtained eight high-quality Euplotia genomes by using single-cell genome sequencing techniques. The genomes have high genomic completeness, with sizes between 68 and 125 M and gene numbers between 14K and 25K. Through comparative genomic analysis, we found that there are a large number of gene expansion events in Euplotia genomes, and these expansions are closely related to the phenotypic evolution and specific environmental adaptations of individual species. We further found four distinct subgroups in the genus Euplotes, which exhibited considerable genetic distance and relative lack of conserved genomic syntenies. Comparative genomic analyses of Uronychia and its relatives revealed significant gene expansion associated with the ciliary movement machinery, which may be related to the unique and strong swimming ability.ConclusionsWe employed single-cell genomics to obtain eight ciliate genomes, characterized the underestimated genomic diversity of Euplotia, and determined the divergence time of representative species in this subclass for the first time. We also further investigated the extensive duplication events associated with speciation and environmental adaptation. This study provides a unique and valuable resource for understanding the evolutionary history and genetic diversity of ciliates.

Symbiotic Effectivity of Dual and Tripartite Associations on Soybean (Glycine max L. Merr.) Cultivars Inoculated With Bradyrhizobium japonicum and AM Fungi.

Soybean (Glycine max L. Merr.) is regarded worldwide as indisputably one of the most important crops for human food and animal feed. The presence of symbiotic bacteria and fungi is essential for soybean breeding, especially in low-input agricultural systems. Research on the cooperation between different microbial symbionts is a key to understanding how the health and productivity of the plant is supported. The symbiotic effectivity of dual and tripartite symbiotic agents was investigated in two pot experiments on different soybean cultivars with special regard to compatibility. In the Selection experiment, two out of sixteen soybean cultivars (Aliz, Emese) were chosen on the basis of their drought tolerance and used in all the other investigations. In the Compatibility experiment, the compatible coupling of symbiotic partners was selected based on the efficiency of single and co-inoculation with two Bradyrhizobium japonicum strains and two commercial arbuscular mycorrhizal fungal (AMF) products. Significant differences were found in the infectivity and effectivity of the microsymbionts. The rhizobial and AMF inoculation generally improved plant production, photosynthetic efficiency and root activity, but this effect depended on the type of symbiotic assotiation. Despite the low infectivity of AMF, inocula containing fungi were more beneficial than those containing only rhizobia. In the Drought Stress (DS) experiment, co-inoculated and control plants were grown in chernozem soil originating from organic farms. Emese was more resistant to drought stress than Aliz and produced a bigger root system. Under DS, the growth parameters of both microbially inoculated cultivars were better than that of control, proving that even drought tolerant genotypes can strengthen their endurance due to inoculation with AMF and nitrogen fixing bacteria. Root electrical capacitance (CR) showed a highly significant linear correlation with root and shoot dry mass and leaf area. The same root biomass was associated with higher CR in inoculated hosts. As CR method detects the absorptive surface increasing due to inoculation, it may be used to check the efficiency of the microbial treatment.

Symbiotic bacteria associated with gut symbiotic organs and female genital accessory organs of the leaf beetle Bromius obscurus (Coleoptera: Chrysomelidae)

Leaf beetles (Coleoptera: Chrysomelidae) constitute one of the most species-rich insect families, and live exclusively on leaves or other plant parts. Early histological works described the presence of symbiotic bacteria in gut-associated symbiotic organs of some chrysomelid species, but their microbiological nature has been poorly characterized except for those associated with reed beetles of the subfamily Donaciinae. Here we investigated symbiotic bacteria of the leaf beetle Bromius obscurus (L.) belonging to the subfamily Eumolpinae. Specific bacterial 16S ribosomal RNA and gyrB gene sequences were consistently obtained from the symbiotic organs, which radially surround the foregut-midgut junction, of all adult males and females examined. In adult females, the same sequences were also obtained from a pair of genital accessory organs, which are presumably for vertical symbiont transmission. Whole mount in situ hybridization specifically detected the symbiont in the gut symbiotic organs endocellularly and also in the female genital accessory organs extracellularly. In the gut symbiotic organs, the endocellular symbiont cells were small and rosette-like or aggregated and granule-like, whereas in the female genital organs the extracellular symbiont cells were of a condensed form. Molecular phylogenetic analysis showed that the symbiont of B. obscurus constitutes a distinct lineage in the Gammaproteobacteria. Molecular evolutionary analysis has identified significantly accelerated molecular evolution and a highly adenine–thymine-biased nucleotide composition of the symbiont genes, presumably reflecting reductive evolution of the symbiont genome. These results suggest an intimate and stable host-symbiont association in B. obscurus, in which the symbiont may play some important, though hitherto unknown, biological roles in its herbivorous insect host.

An integrated overview of the midgut bacterial flora composition of Phlebotomus perniciosus, a vector of zoonotic visceral leishmaniasis in the Western Mediterranean Basin.

BackgroundThe Leishmania developmental life cycle within its sand fly vector occurs exclusively in the lumen of the insect’s digestive tract in the presence of symbiotic bacteria. The composition of the gut microbiota and the factors that influence its composition are currently poorly understood. A set of factors, including the host and its environment, may influence this composition. It has been demonstrated that the insect gut microbiota influences the development of several human pathogens, such as Plasmodium falciparum. For sand flies and Leishmania, understanding the interactions between the parasite and the microbial environment of the vector midgut can provide new tools to control Leishmania transmission.Methodology/Principal findingsThe midguts of female Phlebotomus perniciosus from laboratory colonies or from the field were collected during the months of July, September and October 2011 and dissected. The midguts were analyzed by culture-dependent and culture-independent methods. A total of 441 and 115 cultivable isolates were assigned to 30 and 11 phylotypes from field-collected and colonized P. perniciosus, respectively. Analysis of monthly variations in microbiota composition shows a species diversity decline in October, which is to the end of the Leishmania infantum transmission period. In parallel, a compilation and a meta-analysis of all available data concerning the microbiota of two Psychodidae genera, namely Phlebotomus and Lutzomyia, was performed and compared to P. perniciosus, data obtained herein. This integrated analysis did not reveal any substantial divergences between Old and New world sand flies with regards to the midgut bacterial phyla and genera diversity. But clearly, most bacterial species (>76%) are sparsely distributed between Phlebotominae species.Conclusion/SignificanceOur results pinpoint the need for a more exhaustive understanding of the bacterial richness and abundance at the species level in Phlebotominae sand flies in order to capture the role of midgut bacteria during Leishmania development and transmission. The occurrence of Bacillus subtilis in P. perniciosus and at least two other sand fly species studied so far suggests that this bacterial species is a potential candidate for paratransgenic or biolological approaches for the control of sand fly populations in order to prevent Leishmania transmission.

Effects of symbiotic bacteria on chemical sensitivity of Daphnia magna

The crustacean zooplankton Daphnia magna has been widely used for chemical toxicity tests. Although abiotic factors have been well documented in ecotoxicological test protocols, biotic factors that may affect the sensitivity to chemical compounds remain limited. Recently, we identified symbiotic bacteria that are critical for the growth and reproduction of D. magna. The presence of symbiotic bacteria on Daphnia raised the question as to whether these bacteria have a positive or negative effect on toxicity tests. In order to evaluate the effects of symbiotic bacteria on toxicity tests, bacteria-free Daphnia were prepared, and their chemical sensitivities were compared with that of Daphnia with symbiotic bacteria based on an acute immobilization test. The Daphnia with symbiotic bacteria showed higher chemical resistance to nonylphenol, fenoxycarb, and pentachlorophenol than bacteria-free Daphnia. These results suggested potential roles of symbiotic bacteria in the chemical resistance of its host Daphnia.

Host plant species determines symbiotic bacterial community mediating suppression of plant defenses

Herbivore associated bacteria are vital mediators of plant and insect interactions. Host plants play an important role in shaping the gut bacterial community of insects. Colorado potato beetles (CPB; Leptinotarsa decemlineata) use several Solanum plants as hosts in their natural environment. We previously showed that symbiotic gut bacteria from CPB larvae suppressed jasmonate (JA)-induced defenses in tomato. However, little is known about how changes in the bacterial community may be involved in the manipulation of induced defenses in wild and cultivated Solanum plants of CPB. Here, we examined suppression of JA-mediated defense in wild and cultivated hosts of CPB by chemical elicitors and their symbiotic bacteria. Furthermore, we investigated associations between the gut bacterial community and suppression of plant defenses using 16 S rRNA amplicon sequencing. Symbiotic bacteria decreased plant defenses in all Solanum hosts and there were different gut bacterial communities in CPB fed on different host plants. When larvae were reared on different hosts, defense suppression differed among host plants. These results demonstrate that host plants influence herbivore gut bacterial communities and consequently affect the herbivore’s ability to manipulate JA-mediated plant defenses. Thus, the presence of symbiotic bacteria that suppress plant defenses might help CPB adapt to host plants.

Chemical investigation of lipids of a marine sponge Spirastrella vagabunda

Sponges are among the simplest of multicellular animals and are often described as the most primitive of all. Study of sponge lipids is as important as other secondary metabolites and has been well documented in a series of extensive reviews by Berge and Barnathan, Rod kina, etc. [1, 2]. Regular research into lipids of sponges began in the 1970s [3] and continues till today because they have the greatest diversity of fatty acids, sterols etc. Studies on fatty acids and sterols as lipid components of sponges and other organisms have been elaborately taken up by a number of investigators [4, 5]. There are only a few investigations on this species, Spirastrella vagabunda. The aqueous extract of this species has shown high phospholipase A2 catalytic activity [6]. The bacteria isolated from this sponge produced acetylcholinesterase, an essential enzyme [7], but no investigation on the chemistry of this species has been done so far. This paper presents a study of the fatty acid profile and sterol composition of the total lipid of S. vagabunda for the first time (Table 1). A significant number of fatty acids were identified by GC-MS. The fatty acids were characterized by linear saturated fatty acids, monobranched saturated fatty acids, polybranched saturated fatty acid, monounsaturated fatty acids, and polyunsaturated fatty acids. The percentage of straight-chain fatty acids was 28.22% of the total fatty acids. Generally, among the saturated fatty acids, C16:0 and C18:0 dominated in most of the sponges. In the present investigation, the main saturated fatty acids are also C16:0 (6.37%) and C18:0 (5.77%). It is interesting that long-chain saturated fatty acids like C23:0, C24:0, C25:0, and C28:0 are present in good quantity in S. vagabunda. S. vagabunda contains the highest percentage of monomethyl branched fatty acids, i.e., 45.5% of the total fatty acid content, as in the marine sponge species Geodia gibberosa, which also contains 40–50% of branched fatty acids [8]. Among these branched fatty acids the amount of 11-methyloctadecanoic acid was significantly high, i.e., 13.31% of the total FA. A long-chain branched fatty acid, i.e., br-24-methylhexacosanoic acid, is also present in good quantity (8.97%). The identification of 11-methyl-18:0 and 24-methyl-26:0 (ante-iso) acids was finally confirmed by comparing their key mass fragments (11-methyl-18:0: m/z 312 M+, 269, 213, 185, 143; 24-methyl-26:0: m/z 424 M+, 381, 339, 199, 266, 143) obtained by GC-MS analysis with their literature data. The presence of saturated isoand ante-iso acids (branched fatty acids) is known to have a bacterial origin [9, 10]. So, the presence of symbiotic bacteria cannot be excluded. 3,7,11-Trimethyldodecanoic acid, a very rarely found polymethyl branched fatty acid, which was earlier identified from the marine sponge Xestospongia muta [11], was reported to be present in S. vagabunda, which is an important finding. The identification of 3,7,11-trimethyldodecanoic acid was confirmed by the key mass fragments at m/z 101 and at m/z 171, which indicate the methyl branching at 3 and 7 position [11]. Generally in various sponge species, the percentage of monoenes varies from 2% to 50% of the total FA content. But in the present investigation, only one monoenic acid C18:1 (2.42%) is identified. C18:1 (9) and C18:1 (11) are the principal isomers of C18 monoenes in sponges [2]. The GC-MS spectrum of the C18:1 showed important mass fragments at m/z 296 (M+), 264, 221, 180, 123, 109, and 96, and by comparing with the literature data, the monoenic acid is identified as C18:1 (9). The polyunsaturated FA of this species is represented by one diene and one trienoic acids with total content of 17.91%.

Antimicrobial chemicals in hoopoe preen secretions are produced by symbiotic bacteria

Animals frequently use metabolites produced by symbiotic bacteria as agents against pathogens and parasites. Secretions from the preen gland of birds are used for this purpose, although its chemicals apparently are produced by the birds themselves. European hoopoes Upupa epops and green woodhoopoes Phoeniculus purpureus harbour symbiotic bacteria in the uropygial gland that might be partly responsible for the chemical composition of secretions. Here we investigate the antimicrobial activity of the volatile fraction of chemicals in hoopoe preen secretions, and, by means of experimental antibiotic injections, test whether symbiotic bacteria living within the uropygial gland are responsible for their production. Hoopoes produce two different kinds of secretions that differ drastically in their chemical composition. While the malodorous dark secretions produced by nestlings included a complex mix of volatiles, these chemicals did not appear in white secretions produced by non-nesting birds. All volatiles detected showed strong antibacterial activity, and a mixture of the chemicals at the concentrations measured in nestling glands inhibited the growth of all bacterial strains assayed. We found support for the hypothesized role of bacteria in the production of such antimicrobial chemicals because experimental clearance of bacteria from glands of nestlings with antibiotics resulted in secretions without most of the volatiles detected in control individuals. Thus, the presence of symbiotic bacteria in the uropygial gland provides hoopoes with potent antimicrobials for topical use.

Seasonal, sexual and developmental differences in hoopoe Upupa epops preen gland morphology and secretions: evidence for a role of bacteria

The uropygial glands of birds serve multiple functions, and there is great interspecific variability in the composition and properties of their secretions. A special case is the secretion in the hoopoes Upupa epops, and green woodhoopoes Phoeniculus purpureus, which, contrary to the commonly white and odourless secretions, are dark with pungent odour. Recently, bacteria have been isolated from glands of both woodhoopoes and hoopoes and here we test the hypothesis that bacteria are responsible of some of the special properties of glands and secretions of this group of birds. We explore natural seasonal changes and intersexual differences in the properties of hoopoe glands and secretions, check the natural occurrence of bacteria within secretions, and analyse the effect of experimental injection of antibiotics on uropygial gland properties. Male glands underwent no seasonal changes, and their secretions were invariably white and odourless, very similar to female glands outside the breeding season. However, in comparison to the uropygial gland of non‐breeding females, those of incubating females showed a marked increase in size and volume of secretion produced, which became dark and pungent. All these parameters increased until the hatching date and returned to values similar to those in the prelaying phase towards the end of the nestling period. Nestling glands produced secretions similar to those of females in colour and odour. Gland size of both females and nestlings predicted the amount of secretion produced. Microscopic techniques confirmed the presence of bacteria at high density and in active division in all dark secretions examined. The antibiotic treatment significantly reduced the load of enterococci in nestling glands, did not affect size of glands, but diminished the volume of secretion, which was lighter in colour than that of control nestlings. In nesting females, the experimental injection of antibiotic affected some measurements of gland size and secretion colour. Because the experiment did not affect general health estimates (immunocompetence, body condition or growing) of nestlings, our results suggest that some of the special properties of hoopoe glands are mediated by the presence of symbiotic bacteria.

Molecular Identification of Hemolymph-Associated Symbiotic Bacteria in Red Imported Fire Ant Larvae

The red imported fire ant (RIFA) (Solenopsis invicta Buren), an exotic insect pest in Texas, has become well established throughout the eastern part of the state. More aggressive than native ant species, RIFA gradually have enlarged their range and spread north and west despite intense efforts to stop them. Symbiotic bacteria have an important relationship in the midgut of fourth instar RIFA larvae. However, the presence of symbiotic bacteria in hemolymph has not been explored. In this study, symbiotic bacteria isolated from the hemolymph of fourth instar larvae of RIFA were genetically identified in terms of genus using a partial sequence of the 16S rRNA gene. Using three different primer sets to amplify regions of the gyrA, gyrB, and SG850 genes, multiple species of the genus Bacillus were identified as inhabitants of fire ant hemolymph. Analysis of gyrA gene identified Bacillus cereus with a percentage match of 94.13-99.20% with DNA sequences from GenBank BLAST ( www.ncbi.nih.gov ). Using the gyrB gene, Bacillus species were identified with a percentage match of 95.48% to 100% using DNA sequences from GenBank. Finally, analysis of the SG850 gene identified Bacillus cereus with a percentage match of 96.20% to 99.83% using DNA sequences from GenBank.

Presence of specific symbiotic bacteria in flies of the subfamily Tephritinae (Diptera Tephritidae) and their phylogenetic relationships: proposal of 'Candidatus Stammerula tephritidis'

The presence of symbiotic bacteria in flies belonging to the subfamily Tephritinae, which predominantly infest the flower heads of composite flowers (Asteraceae), was investigated. Twenty-five species of flies, collected mainly in northern Italy, were examined. The bacteria adhered to the midgut epithelium in a space external to the peritrophic membrane and therefore not in direct contact with the gut contents. Specific, unique and live, but unculturable bacteria were consistently found in the majority of the fly species and their presence was also shown to be persistent in flies reared under microbiologically controlled conditions and devoid of any residual culturable intestinal bacteria. Sequencing of the small subunit rRNA gene from the novel bacteria indicated that they belonged to the family Enterobacteriaceae. Three main strongly supported clades were delineated by phylogenetic trees, the first of which featured a coherent set of sequences displaying gene sequence similarities lower than 96 % compared with recognized taxa. The second and third clades featured cases with higher gene sequence similarities to culturable bacteria, including Erwinia persicina and Ewingella americana, respectively. Relative rate tests were supportive of a fast genetic evolution for the majority of the bacterial symbionts of the subfamily Tephritinae. In agreement with the interpretation suggested in 1929 after pioneering observations made by H. J. Stammer, a symbiotic relationship between the novel bacteria and the tephritid flies is postulated. The origin of this apparently polyphyletic relationship is discussed and a novel candidate organism is proposed for the first clade under the designation 'Candidatus Stammerula tephritidis'.

Internal storage and production of symbiotic bacteria in the reproductive system of a tropical marine gastropod

The vestibular gland and egg masses of Dendrodoris nigra (Gastropoda: Opisthobranchia: Nudibranchia) were investigated histologically and ultrastructurally. A detailed description of the ultrastructure of the gland and the egg masses is given, and the presence of symbiotic bacteria in the vestibular gland and identical-appearing bacteria in the egg masses is reported for the first time. Hypotheses about the function of these bacteria in the reproductive system of D. nigra are presented.

The Inductive Role of Bacterial Symbionts in the Morphogenesis of a Squid Light Organ

SYNOPSIS. The association of the sepiolid squid Euprymna scolopes with its marine luminous bacterial symbiont Vibrio fischeri is an emerging model system to study the initiation and development of bacterial symbioses in higher animals, in particular the influence of bacteria on the ontogenic development of symbiotic-specific host tissues. Experiments comparing the development of juvenile squid infected with symbiotic V. fischeri with that of uninfected juveniles suggest postembryonic development of the light organ requires cell-cell interactions with the bacterial symbionts. The presence of symbiotic bacteria induces specific morphological changes by affecting such fundamental processes as cell death and cell differentiation. The surface of the juvenile organ is largely composed of ciliated cells that appear to facilitate infection of the light organ. These cells begin to undergo cell death within hours of infection with symbiotic V. fischeri . Within three days the epithelial cells that form the bacteriacontaining crypts of the light organ increase in size; these cells do not appear mitotically active, and may represent a terminally differentiated state. The light organs of uninfected juvenile E. scolopes , however, do not exhibit any of these early postembryonic developmental events but remain in a state of arrested morphogenesis.

Enzymatic defenses against oxygen toxicity in the hydrothermal vent animals Riftia pachyptila and Calyptogena magnifica

Two deep-sea hydrothermal vent organisms, the tube worm Riftia pachyptila and the clam Calyptogena magnifica, contain superoxide dismutase, dianisidine peroxidase, and glutathione peroxidase. The tube worm trophosome exhibits an iron-containing superoxide dismutase, ordinarily associated with prokaryotes and not previously seen in an animal tissue, in accord with the presence of symbiotic bacteria in this tissue. The enzymes which provide a defense against oxygen toxicity are thus present in these animals.