Preferential Retention Research Articles

Enhanced glomerular transfection by BMP7 gene nanocarriers inhibits CKD and promotes SOX9-dependent tubule regeneration

Renal fibrosis and loss of kidney function are key characteristics of chronic kidney disease (CKD). To address the lack of effective treatments, multifunctional layer-by-layer (LbL) assembled polymeric gene-carrier nanoparticles (PCHS-NP) are prepared to realize preferential accumulation and retention within renal glomerular cells, thereby effectively leveraging cortically localized structures for the synthesis and paracrine secretion of the antifibrotic growth factor, bone morphogenetic protein-7 (BMP7). PCHS-NP had stable homogenous morphologies, kidney-targeting functionality, antioxidative effects, and high transfection efficiency. In unilateral ureteral obstruction (UUO)-induced renal fibrosis, a single systemic injection of PCHS-NP prevents tubular atrophy and interstitial fibrosis, and the resultant tissue microenvironment is more conducive to tubular regeneration driven by the upregulation of proliferative SOX9-expressing tubular cells. In longer-term folic acid (FA)-induced renal fibrosis, we show that early, late, and repeat systemic injections restore kidney health and function. This study indicates that PCHS-NP accomplish a promising therapeutic option for the treatment of CKD.

Coping with alpine habitats: genomic insights into the adaptation strategies of Triplostegia glandulifera (Caprifoliaceae).

How plants find a way to thrive in alpine habitats remains largely unknown. Here we present a chromosome-level genome assembly for an alpine medicinal herb, Triplostegia glandulifera (Caprifoliaceae), and 13 transcriptomes from other species of Dipsacales. We detected a whole-genome duplication event in T. glandulifera that occurred prior to the diversification of Dipsacales. Preferential gene retention after whole-genome duplication was found to contribute to increasing cold-related genes in T. glandulifera. A series of genes putatively associated with alpine adaptation (e.g. CBFs, ERF-VIIs, and RAD51C) exhibited higher expression levels in T. glandulifera than in its low-elevation relative, Lonicera japonica. Comparative genomic analysis among five pairs of high- vs low-elevation species, including a comparison of T. glandulifera and L. japonica, indicated that the gene families related to disease resistance experienced a significantly convergent contraction in alpine plants compared with their lowland relatives. The reduction in gene repertory size was largely concentrated in clades of genes for pathogen recognition (e.g. CNLs, prRLPs, and XII RLKs), while the clades for signal transduction and development remained nearly unchanged. This finding reflects an energy-saving strategy for survival in hostile alpine areas, where there is a tradeoff with less challenge from pathogens and limited resources for growth. We also identified candidate genes for alpine adaptation (e.g. RAD1, DMC1, and MSH3) that were under convergent positive selection or that exhibited a convergent acceleration in evolutionary rate in the investigated alpine plants. Overall, our study provides novel insights into the high-elevation adaptation strategies of this and other alpine plants.

Assimilation of fish farm wastes by the ecosystem engineering bivalve Atrina zelandica

As feed-additive aquaculture expands to open ocean areas, there is concern that ecologically important habitats may be adversely impacted by sedimentation of farm wastes. In this study, we investigated assimilation of salmon faecal wastes by an ecosystem engineering bivalve that occurs in open ocean environments (Atrina zelandica), as well as effects on physiology and fatty acid metabolism. A. zelandica were subjected to one of 3 treatment diets (fish faeces, 1:1 mix of algae:faeces and algae) in a 51 d laboratory trial. We found a diet-related response in fatty acid composition, including increased prevalence of oleic acid (OA) in digestive tissues of A. zelandica fed on both the fish faeces diet and the mixed diet, indicating fish wastes were assimilated in both treatments. Fish waste consumption was related to a more marked reduction in fatty acid content of digestive gland, as well as lower proportions of long-chain polyunsaturated fatty acids (LC-PUFA) in digestive tissues. Fatty acid composition in gonad and muscle tissues was more strongly influenced by sex. Regardless of dietary treatment, females accumulated C18 fatty acids in gonad tissues, particularly OA, which may preclude the use of OA as a fish waste tracer in this organ. The accumulation of specific fatty acids according to sex may indicate a capacity for preferential selection and retention or biosynthesis of biologically important fatty acids. If present, these mechanisms may increase resilience of A. zelandica to stress from deficiencies in LC-PUFA when using fish wastes as a trophic subsidy.

Contrasting roles of rice root iron plaque in retention and plant uptake of silicon, phosphorus, arsenic, and selenium in diverse paddy soils

Background and aimsIron (Fe) plaque on rice roots is a mixture of Fe oxide and oxyhydroxide minerals thought to protect rice from high levels of arsenic (As) in flooded paddy soils. Silicon (Si), phosphorus (P), and selenium (Se) also exist as oxyanions in rice paddies, but the impacts of Fe plaque on uptake of these nutrients are unknown.MethodsWe used natural variation in paddy soil chemistry to test how Si, P, As, and Se move from porewater to plaque to plant via multiple techniques. In a pot study, we monitored Fe plaque deposition and porewater chemistry in 5 different soils over time and measured plaque/plant chemistry and Fe plaque mineralogy at harvest. We normalized oxyanion concentrations by Fe to determine the preferential retention on plaque or plant uptake.ResultsLow phosphorus availability increased root Fe-oxidizing activity, while Fe, Si, P, As, and Se concentrations in plaque were strongly correlated with porewater. Plaque did not appreciably retain Si and Se, and the oxyanions did not compete for adsorption sites on the Fe plaque.ConclusionRoot Fe plaque seems to protect rice from As uptake, does not interfere with Si and Se uptake, and roots adapt to maintain P nutrition even with retention of porewater P on plaque.

Flower Visitors, Levels of Cross-Fertilisation, and Pollen-Parent Effects on Fruit Quality in Mango Orchards

Pollination is essential for the reproductive output of crops. Anthropogenic disturbance and global pollinator decline limit pollination success, reducing the quantity or quality of pollen. Relationships between the abundance of flower visitors and fruit production are often poorly understood. We aimed to (1) identify and quantify flower visitors in a mango orchard; (2) assess how much of the crop resulted from self- versus cross-pollination at increasing distances from a cross-pollen source in large, single-cultivar blocks of the cultivar Kensington Pride or the cultivar Calypso; and (3) determine how pollen parentage affected the size, colour, flavour attributes, and nutritional quality of fruit. Mango flowers were mostly visited by rhiniid flies and coccinellid beetles. Approximately 30% of the fruit were the result of cross-pollination, with the percentage significantly decreasing with an increasing distance from a cross-pollen source in the cultivar Calypso. Self-pollinated Calypso fruit were slightly larger and heavier, with higher acid and total polyphenol concentrations than cross-pollinated fruit. Our results showed higher-than-expected levels of cross-fertilisation among fruit, although self-pollen was likely more abundant than cross-pollen in the large orchard blocks. Our results suggest the preferential cross-fertilisation of flowers or the preferential retention of cross-fertilised fruitlets, both representing strategies for circumventing inbreeding depression. Growers should establish vegetated habitats to support pollinator populations and interplant cultivars more closely to maximise cross-pollen transfer.

Using 15N to determine the metabolic fate of dietary nitrogen in North Pacific spiny dogfish (Squalus acanthias suckleyi).

Marine elasmobranchs are ureosmotic, retaining large concentrations of urea to balance their internal osmotic pressure with that of the external marine environment. The synthesis of urea requires the intake of exogenous nitrogen to maintain whole-body nitrogen balance and satisfy obligatory osmoregulatory and somatic processes. We hypothesized that dietary nitrogen may be directed toward the synthesis of specific nitrogenous molecules in post-fed animals; specifically, we predicted the preferential accumulation and retention of labelled nitrogen would be directed towards the synthesis of urea necessary for osmoregulatory purposes. North Pacific spiny dogfish (Squalus acanthias suckleyi) were fed a single meal of 7 mmol l-1 15NH4Cl in a 2% ration by body mass of herring slurry via gavage. Dietary labelled nitrogen was tracked from ingestion to tissue incorporation and the subsequent synthesis of nitrogenous compounds (urea, glutamine, bulk amino acids, protein) in the intestinal spiral valve, plasma, liver and muscle. Within 20 h post-feeding, we found labelled nitrogen was incorporated into all tissues examined. The highest δ15N values were seen in the anterior region of the spiral valve at 20 h post-feeding, suggesting this region was particularly important in assimilating the dietary labelled nitrogen. In all tissues examined, enrichment of the nitrogenous compounds was sustained throughout the 168 h experimental period, highlighting the ability of these animals to retain and use dietary nitrogen for both osmoregulatory and somatic processes.

Correlating laser energy with compositional and atomic-level information of oxides in atom probe tomography

Atom probe tomography (APT) is a 3D analysis technique that offers unique chemical accuracy and sensitivity with sub-nanometer spatial resolution. There is an increasing interest in the application of APT to complex oxides materials, giving new insight into the relation between local variations in chemical composition and emergent physical properties. However, in contrast to the field of metallurgy, where APT is routinely applied to study materials at the atomic level, complex oxides and their specific field evaporation mechanisms are much less explored. Here, we perform APT measurements on the hexagonal manganite ErMnO3 and systematically study the effect of different experimental parameters on the measured composition and structure. We demonstrate that both the mass resolving power (MRP) and compositional accuracy can be improved by increasing the charge-state ratio (CSR) working at low laser energy (< 5 pJ) for a given fixed detection rate. Furthermore, we observe a substantial preferential retention of Er atoms, which is suppressed at higher CSRs. We explain our findings based on fundamental field evaporation concepts, expanding the knowledge about the impact of key experimental parameters and the field evaporation process in complex oxides in general.

Nickel mass balance and isotopic records in a serpentinic weathering profile: Implications on the continental Ni budget

During serpentinite rock weathering, Ni is concentrated in the regolith owing to residual and secondary enrichment, forming a Ni-rich deposit under tropical conditions. This study presents geochemical, isotopic, and mineralogical data for Ni from the Serra do Puma Complex (SPC) weathering profile in Carajas (Brazil). The Ni fluxes, redistribution, and Ni isotopic fractionation magnitudes were quantified along the entire weathering profile: rock, saprock, lower and upper saprolite, and limonite. The results show that chlorite and serpentine are the primary Ni-scavenging phases in saprolite, whereas Fe oxyhydroxides are the main Ni-hosting minerals in the limonite unit. The mass balance model confirmed a global Ni gain at the weathered profile scale, with larger Ni enrichment in the upper saprolite. The isotopic dataset obtained in this study contributes greatly to the knowledge of the current Ni cycle on regional and global scales. The detailed insights into Ni isotopes in the SPC, coupled with chemical and mineralogical composition, allow for the first time a Ni mass balance and Ni isotopic values for an entire weathering profile in an Amazonian context. The Ni isotopic profile agrees with the preferential retention of light Ni isotopes in the residual material relative to the parent rock during weathering processes, with the Δ60Ni limonite-saprock of −0.72‰. In the SPC, major isotopic fractionation was notably recorded during saprolitization, while limonitization was accompanied by an overall Ni loss without significant Ni isotopic fractionation. As already observed in previous studies, heavier Ni isotopes, preferentially leached during weathering processes, can be further mobilized downward and lost from the profile or incorporated in secondary minerals in the saprolite and limonite sections. The Ni isotopic mass balance model indicated that the Ni loss from the weathered serpentinite profile was isotopically heavy, in agreement with the isotopically heavier composition of the dissolved load of Amazonian rivers. The isotopically light Ni pool, associated with the significant Ni gain encountered in the upper saprolite, is notable in the SPC weathering profile and confirms the existence of a light Ni isotope reservoir in the continent.

Body weight and fat trajectories of Black and White women in the first postpartum year.

The aim of this study was to examine changes in body weight and fat in Black and White women during the first postpartum year and to determine whether there is preferential retention of fat mass and abdominal fat. Body composition was quantified by dual-energy x-ray absorptiometry in Black (n=49) and White (n=85) women at 6 to 8 weeks, 6 months, and 12 months after delivery of a singleton infant. Weight, fat mass, percent body fat, and fat in the trunk, android, gynoid, and limb regions decreased from 6 to 8 weeks to 12 months in White women, but not in Black women (fat mass, adjusted mean [SE]: 29.6 [1.3] to 26.9 [1.3] kg in White women and 34.5 [1.5] to 36.8 [1.8] kg in Black women). In the entire sample, fat mass was higher at 6 months than at 6 to 8 weeks, independent of weight change; visceral fat was higher at 12 months (686 [45] g) than at 6 to 8 weeks (611 [42] g) and 6 months (626 [43] g); and android fat was higher at 12 months than at 6 months, independent of fat change. Black women were less likely than White women to lose weight and fat in the postpartum period. There was preferential retention of fat in the abdominal area.

Abstract CT104: MC1R imaging and histology in the targeted imaging of melanoma for alpha-particle radiotherapy (TIMAR1) trial

Abstract Purpose: Melanocortin 1 receptor (MC1R) has been shown in animal models to be a target for effective radionuclide therapy. This first-in-human clinical trial studied the safety and biodistribution of two novel MC1R-targeted imaging tracers designed to support the development of MC1R-targeted alpha particle therapy through image-based identification of MC1R and radiation dosimetry. Imaging was compared to MC1R expression by immunohistochemistry (IHC) of subjects’ melanoma tumors. Methods: Subjects with stage IV melanoma were randomized to receive either [203Pb]VMT01 SPECT/CT imaging followed by [68Ga]VMT02 PET/CT imaging approximately 1 month later, or vice versa in a cross-over design during their normal melanoma treatment course. Patient selection included a positive [18F]FDG PET/CT within 30 days of imaging tracer injection. 555 - 925 mBq of [203Pb]VMT01 was injected IV with imaging performed at 1, 4, and 24 hours. 74 - 277 mBq [68Ga]VMT02 was injected IV and imaging performed dynamically up to 1 hour, and at 2 and 3 hours. Due to an interruption in drug supply, only 3 subjects received [203Pb]VMT01 imaging. Key FDG-avid melanoma lesions were marked and presented to three experienced Radiologists serving as blinded reviewers. The blinded reviewers compared [18F]FDG PET/CT to experimental imaging and scored scans and key lesions on multiple metrics. Imaging positivity was defined as tumor uptake and retention of tracer in ≥ 1 melanoma tumors above background liver activity. Melanoma biopsy tissue was obtained and MC1R IHC performed as available. Results: 7 subjects were enrolled; 6 were imaged and 5 had available pathology. 3 of 6 imaged subjects had MC1R positive tumors via experimental imaging tracers. [68Ga]VMT02 PET/CT at 3 hours led to the best tumor to background ratio, and [203Pb]VMT01 SPECT/CT showed tumor retention at 24 hours. 4 of 5 subjects had positive MC1R staining by IHC. Of the 3 subjects with negative imaging, 2 had positive staining by IHC. Of the 3 subjects with positive imaging, 2 had available biopsies and all stained positive for MC1R by IHC. Conclusion: A subgroup of advanced melanoma patients were identified to express MC1R using new MC1R-targeted imaging agents. Full concordance between imaging and IHC of positive scans, but not with negative scans, suggests that IHC is a more sensitive biomarker detection method. Additional testing is needed to establish frequency of positive MC1R imaging in stage IV melanoma and its correlation to histological findings and treatment outcomes. Preferential tumor retention provides proof-of-concept that the MC1R-targeting therapy trial for [212Pb]VMT01 alpha-emitting therapy will deliver localized radiation to high MC1R expressing tumors as screened by [203Pb]VMT01 or [68Ga]VMT02. Imaging quality is sufficient for subject selection and dosimetry but may exclude subjects with MC1R receptor expression only detectable by IHC. Citation Format: Brenna M. Marks, Matthew Block, Geoffrey B. Johnson, Carrie B. Hruska, Mukesh K. Pandey, Andrew Paulsen, Michael K. Schultz, Michael A. McDonald, Edwin A. Sagastume, Frances L. Johnson. MC1R imaging and histology in the targeted imaging of melanoma for alpha-particle radiotherapy (TIMAR1) trial [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2023; Part 2 (Clinical Trials and Late-Breaking Research); 2023 Apr 14-19; Orlando, FL. Philadelphia (PA): AACR; Cancer Res 2023;83(8_Suppl):Abstract nr CT104.

Near-infrared fluorescence imaging of hepatocellular carcinoma cells regulated by β-catenin signaling pathway.

Near-infrared fluorescence (NIRF) imaging has recently emerged as a promising tool for noninvasive cancer imaging. However, lack of tumor sensitivity and specificity restricts the application of NIRF dyes in surgical navigation. Herein, we investigated the imaging features of NIRF dye MHI-148 and indocyanine green (ICG) in live cell imaging and xenograft nude mice models. TCGA dataset analysis and immunohistochemistry were conducted to investigate the expression of OATPs or ABCGs in hepatocellular carcinoma (HCC) tissues. OATPs or ABCGs were knocked down and overexpressed in HCC cells using transient transfection by siRNA and plasmids or stable transfection by lentivirus. Further, qRT-PCR ,Western blotting and the use of agonists or inhibitors targeting β-catenin signaling pathway were applied to explore its important role in regulation of OATP2B1 and ABCG2 expression. Here we demonstrated that NIRF dye MHI-148 was biocompatible as indocyanine green (ICG) but with higher imaging intensity and preferential uptake and retention in hepatocellular carcinoma (HCC) cells and tissues. Moreover, our data indicated that membrane transporters OATP2B1 and ABCG2, which regulated by β-catenin signaling pathway, mediated tumor-specific accumulation and retention of MHI-148 in HCC cells. In addition, the treatment with β-catenin inhibitor significantly enhanced the accumulation of MHI-148 in HCC tissues and improved the efficacy of tumor imaging with MHI-148 in vivo. Our study uncovers a mechanism that links the distribution and expression of the membrane transporters OATP2B1 and ABCG2 to the tumor-specific accumulation of MHI-148, and provides evidence supporting a regulating role of the β-catenin signaling pathway in OATP2B1 and ABCG2- induced retention of MHI-148 inHCC tissues, and strategy targeting key components of MHI-148 transport machinery may be a potential approach to improve HCC imaging.

Halogen enrichment in the North American lithospheric mantle from the dehydration of the Farallon plate

A greater quantity of halogens (F, Cl, Br, and I) appear to be subducted globally than are erupted at magmatic arcs, requiring either an increase in the mantle halogen budget through time or an additional output pathway or reservoir. The sub-continental lithospheric mantle (SCLM) is one such reservoir. SCLM can be enriched in volatile elements after metasomatism by fluids or melts from subducting oceanic lithosphere. We analyzed the bulk halogen content (F, Cl, Br, and I) of 28 variably metasomatized spinel and garnet peridotite xenoliths from the Navajo Volcanic Field (NVF; Central Colorado Plateau) to constrain the effects of the subducting Farallon plate-derived metasomatism on the halogen content of the western North American SCLM. We also analyzed 33 anhydrous spinel peridotites from various localities on and around the Colorado Plateau, as well as xenoliths from Oahu, Hawaii, and Eifel, Germany to compare them to the modally hydrated NVF xenoliths. Cl, Br, and I are enriched in NVF xenoliths relative to the depleted mantle, correlating with olivine oxygen isotope values and indices of metasomatism. F is less enriched, indicating preferential retention in the slab residue. Br/Cl and I/Cl are similar to partially dehydrated serpentinite, indicating that the source of these fluids is consistent with serpentinized oceanic lithosphere of the Farallon plate. Anhydrous xenoliths from the southwestern United States have more depleted mantle-like Cl and F contents but have highly enriched Br contents similar to the NVF xenoliths. Similar to NVF xenoliths, anhydrous xenolith Br/Cl and I/Cl suggest a Farallon derived serpentinite source of halogen enrichment. These results indicate that the Farallon slab sequestered halogens in the North American SCLM of the central and south Colorado Plateau and the southern Rio Grande Rift. Therefore, halogen sequestration in the SCLM may be a critical component in the global halogen cycle.

The use of copper isotopes for understanding metal transfer mechanisms within the continuum mine-river-dam (Huelva Region, Spain).

Mining areas and in particular those containing massive sulfides have left a heavy environmental legacy with soils and hydrographic networks highly contaminated with metals and metalloids as for example in the Iberian Pyrite Belt (Huelva, Spain). Here, we present new data on copper (Cu) isotopic composition of waters and solids collected along a continuum Mine (Tharsis)-River (Meca)-Lake (Sancho) in the Iberian Pyrite Belt. Our results show that the isotopic signature of pit lakes is spatially variable, but remains stable over the seasons; this signature seems to be controlled by water-rock interaction processes. The data obtained on the Meca River imply a number of attenuation processes such as decrease in the metal concentration by precipitation of secondary minerals. This is accompanied by preferential retention of the heavy isotope (65Cu) with a possibility of living organisms (e.g., algae) participation. The terminal Sancho lake demonstrated constant isotopic signature over the entire depth of the water column despite sizable variations in Cu concentrations, which can be tentatively explained by a superposition of counter-interacting biotic and abiotic processes of Cu fractionation. Overall, the understanding of the isotopic variations along the hydrological continuum is useful for a better understanding of metal element transfer within mining environments and surrounding surface waters.

Cross-reactivity influences changes in human influenza A virus and Epstein Barr virus specific CD8 memory T cell receptor alpha and beta repertoires between young and old.

Older people have difficulty controlling infection with common viruses such as influenza A virus (IAV), RNA virus which causes recurrent infections due to a high rate of genetic mutation, and Epstein Barr virus (EBV), DNA virus which persists in B cells for life in the 95% of people that become acutely infected. We questioned whether changes in epitope-specific memory CD8 T cell receptor (TCR) repertoires to these two common viruses could occur with increasing age and contribute to waning immunity. We compared CD8 memory TCR alpha and beta repertoires in two HLA-A2+ EBV- and IAV-immune donors, young (Y) and older (O) donors to three immunodominant epitopes known to be cross-reactive, IAV-M158-66 (IAV-M1), EBV-BMLF1280-288 (EBV-BM), and EBV-BRLF1109-117 (EBV-BR). We, therefore, also designed these studies to examine if TCR cross-reactivity could contribute to changes in repertoire with increasing age. TCR high throughput sequencing showed a significant difference in the pattern of TRBV usage between Y and O. However, there were many more differences in AV and AJ usage, between the age groups suggesting that changes in TCRα usage may play a greater role in evolution of the TCR repertoire emphasizing the importance of studying TRAV repertoires. With increasing age there was a preferential retention of TCR for all three epitopes with features in their complementarity-determining region (CDR3) that increased their ease of generation, and their cross-reactive potential. Young and older donors differed in the patterns of AV/AJ and BV/BJ pairings and usage of dominant CDR3 motifs specific to all three epitopes. Both young and older donors had cross-reactive responses between these 3 epitopes, which were unique and differed from the cognate responses having features that suggested they could interact with either ligand. There was an increased tendency for the classic IAV-M1 specific clone BV19-IRSS-JB2.7/AV27-CAGGGSQGNLIF-AJ42 to appear among the cross-reactive clones, suggesting that the dominance of this clone may relate to its cross-reactivity with EBV. These results suggest that although young and older donors retain classic TCR features for each epitope their repertoires are gradually changing with age, maintaining TCRs that are cross-reactive between these two common human viruses, one with recurrent infections and the other a persistent virus which frequently reactivates.

Human-driven long-term disconnect of nutrient inputs to the Yellow River basin and river export to the Bohai Sea

Combining long-term measurements of nitrogen (N) and phosphorus (P) concentrations in the Yellow River (YR) (1981–2018) and river discharge (1981–2018) to the Bohai Sea (BS) with model-based estimates of nutrient delivery shows a disconnect between nutrient delivery and export fluxes to the BS. Basin-wide nutrient delivery to surface water, primarily from agriculture and sewage, exhibited an increasing trend over the whole period. However the nutrient export fluxes to BS declined from 1981 to 2002, followed by a period of large inter-annual variability. Nutrient export is strongly controlled by water discharge, the Water and Sediment Regulation Scheme (WSRS), and the large volume of water containing nutrients that is extracted for primarily irrigation. Dissolved organic N (average 15% in the period 2001–2018) and dissolved organic P (68%) accounted for an important share of total dissolved N and P, which is due to agricultural inputs and preferential retention of inorganic forms in the YR basin. River nutrient export fluxes alone cannot explain the changes in the frequency and area of red tides in the BS due to impacts of the WSRS, the long water residence time in the BS and climate change. This calls for the application of mechanistic models for describing the impact of combined long-term changes in the BS ecosystem.

Substantial burial of terrestrial microplastics in the Three Gorges Reservoir, China

Hydropower dams impact the transport of microplastics from rivers to the ocean. The Yangtze River is a large source of plastics to the ocean. Here, we report microplastic concentrations and compositions across a range of size fractions for sediment samples collected in the upper and lower reaches of the Three Gorges Dam in 2008, 2015, 2019 and 2020. We find a gradual increase in microplastic abundance over time, with preferential retention of small-sized (<300 μm) microplastics in the dam reservoir sediments. Small microplastics accounted for between approximately 44 and 90% of identified microplastics, and 82% of all polyethylene particles, which were the dominant polymer type. Our estimate of the total plastic mass load in reservoir sediments suggests that the Three Gorges Dam retains as much as 8048 ± 7494 tons yr‒1 microplastics in sediments, which is equivalent to 47 ± 44% of the Yangtze River microplastic flux to the ocean.

Chromosomal-level genome assembly of Melastoma candidum provides insights into trichome evolution.

Melastoma, consisting of ~100 species diversified in tropical Asia and Oceania in the past 1-2 million years, represents an excellent example of rapid speciation in flowering plants. Trichomes on hypanthia, twigs and leaves vary markedly among species of this genus and are the most important diagnostic traits for species identification. These traits also play critical roles in contributing to differential adaptation of these species to their own habitats. Here we sequenced the genome of M. candidum, a common, erect-growing species from southern China, with the aim to provide genomic insights into trichome evolution in this genus. We generated a high-quality, chromosome-level genome assembly of M. candidum, with the genome size of 256.2 Mb and protein-coding gene number of 40,938. The gene families specific to, and significantly expanded in Melastoma are enriched for GO terms related to trichome initiation and differentiation. We provide evidence that Melastoma and its sister genus Osbeckia have undergone two whole genome duplications (WGDs) after the triplication event (γ) shared by all core eudicots. Preferential retention of trichome development-related transcription factor genes such as C2H2, bHLH, HD-ZIP, WRKY, and MYB after both WGDs might provide raw materials for trichome evolution and thus contribute to rapid species diversification in Melastoma. Our study provides candidate transcription factor genes related to trichome evolution in Melastoma, which can be used to evolutionary and functional studies of trichome diversification among species of this genus.

Critical Evaluation of Different Passive Sampler Materials and Approaches for the Recovery of SARS-CoV-2, Faecal-Indicator Viruses and Bacteria from Wastewater

During the COVID-19 pandemic, wastewater-based epidemiology (WBE) has proven to be an effective tool for monitoring the prevalence of SARS-CoV-2 in urban communities. However, low-cost, simple, and reliable wastewater sampling techniques are still needed to promote the widespread adoption of WBE in many countries. Since their first use for public health surveillance in the 1950s, many types of passive samplers have been proposed, however, there have been few systematic studies comparing their ability to co-capture enveloped viruses and bacteria. Here, we evaluated the laboratory and field performance of 8 passive sampler materials (NanoCeram, ZetaPlus, nylon and ion exchange membranes, cellulose acetate filters, glass wool, cotton-based Moore swabs and tampons) to capture viruses and bacteria from wastewater. Viral capture focused on SARS-CoV-2, the bacteriophage Phi6 and the faecal marker virus, crAssphage. We showed that the best performing passive sampler in terms of cost, ease of deployment and viral capture were the electronegative cotton-based swabs and tampons. We speculate that viral capture is a combination of trapping of particulate matter to which viruses are attached, as well as electrostatic attraction of viral particles from solution. When deployed at wastewater treatment plants, the passive samplers worked best up to 6 h, after which they became saturated or exhibited a loss of virus, probably due to night-time wash-out. The patterns of viral capture across the different sampling materials were similar providing evidence that they can be used to monitor multiple public health targets. The types of bacteria trapped by the passive samplers were material-specific, but possessed a different 16S rRNA gene profile to the wastewater, suggesting preferential retention of specific bacteria. We conclude that the choice of passive sampler and deployment time greatly influences the pattern and amount of viral and bacterial capture.

Benzimidazolium Ionic‐Liquid‐Functionalized Star‐shaped Copolymer Stationary Phase for Capillary Gas Chromatography

AbstractIn this work, a novel star‐shaped copolymer functionalized by benzimidazolium ionic liquid (Star‐PEG‐PCL2‐2Bim) was synthesized and applied as stationary phase in capillary gas chromatography (GC). After static coating, the Star‐PEG‐PCL2‐2Bim column exhibited a column efficiency of 2655 plates/m and moderate polarity. The Star‐PEG‐PCL2‐2Bim column showed preferential retention and high resolving capability for hydrogen‐bonded and aromatic analytes, showing advantages over the ordinary polysiloxane phase. Impressively, it attained high resolution for the isomer mixtures of halogenated benzene, nitrobenzene, phenol and benzaldehydes with good peak shapes. The advantageous separation performance shows the good potential of the Star‐PEG‐PCL2‐2Bim stationary phase for GC analysis.

Preferential Retention and Transport of Perfluorooctanesulfonic Acid in a Dolomite Aquifer.

Per- and polyfluoroalkyl substances (PFAS) can represent a significant human health risk if present in aquifers used as a drinking water source. Accurate assessment of PFAS exposure risks requires an improved understanding of field-scale PFAS transport in groundwater. Activities at a former firefighter training site in University Park, Pennsylvania introduced perfluorooctanesulfonic acid (PFOS) to the underlying dolomite aquifer. Groundwater sampling from 2015 to 2018 delineated a PFOS plume with two concentration maxima located approximately 20 and approximately 220 m downgradient of the training site, separated by a zone of lower concentrations. We use a combination of analytical and numerical models, informed by independent measurements of aquifer porosity, hydraulic conductivity, and organic carbon content, to interpret the field observations. Our analysis demonstrates that preferential retention and transport resulting from simple heterogeneity in bedrock sorption, as caused by organic carbon (OC) content variability, provides a plausible explanation for plume separation. Dissolved PFOS partitions strongly to organic solids (high Koc ), so even a small OC (<1wt%) significantly retards PFOS transport, whereas zones with little to no OC allow for transport rates that approximate those of a conservative solute. Our work highlights an important consideration for modeling the groundwater transport of PFOS, and other compounds with high Koc . In aquifers with discrete layers of varying OC, models using a uniform site-average OC will underestimate transport distances, thereby misrepresenting exposure risks for downgradient communities.