Precise Diffraction Data Research Articles

Structure Elucidation of Complex Endotaxially Intergrown Lanthanum Barium Oxonitridosilicate Oxides by Combination of Microfocused Synchrotron Radiation and Transmission Electron Microscopy.

Single‐crystalline domains in intergrown microcrystalline material of the new compounds Ba22.5+x La55−x [Si129N240−x O x ]O3:Ce3+ and Ba25.5+x La77−x [Si170N312−x O9+x ]O4:Ce3+ were identified by transmission electron microscopy (TEM). Precise diffraction data from these domains were collected with microfocused synchrotron radiation so that crystal structure elucidation of the complex disordered networks became possible. They are composed of two different interconnected slabs of which one is similar in both compounds, which explains their notorious intergrowth. The distribution of Ba and La is indicated by the analysis of bond‐valence sums and by comparison with isostructural Sr28.5+x La75−x [Si170N312−x O9+x ]O4. Ce3+ doping leads to yellow luminescence. This is a showcase that highlights the discovery and accurate characterization of new compounds relevant for luminescence applications from heterogeneous microcrystalline samples by exploiting the capability of the combination of TEM and diffraction using the latest focusing techniques for synchrotron radiation.

Phase Transitions in the Crystals of l- and dl-Cysteine on Cooling: The Role of the Hydrogen-Bond Distortions and the Side-Chain Motions. 2. dl-Cysteine

Structural strain and a first-order phase transition in the crystalline DL-cysteine on cooling and on reverse heating were followed by Raman spectroscopy and X-ray diffraction. The transition is reversible and has a large hysteresis (over 100 K). The temperature at which the transition is observed depends strongly on the cooling/heating rate. The phase transition is accompanied by crystal fragmentation. The low-temperature phase could be obtained not only as a result of the solid-state transformation in situ as a polycrystalline sample (with strong preferred orientation, or without it, depending on the preparative technique), but also (using an original crystallization technique) as a single crystal of the quality suitable for structural analysis. For the first time, the crystal structure of the low-temperature phase was solved independently by powder and by single-crystal diffraction techniques. The spectral changes were correlated with the precise diffraction data on the intramolecular conformations and the intermolecular hydrogen bonding before and after the phase transition. The role of the distortion of the intermolecular hydrogen bonds and of the motions of the -CH(2)SH side chains in the phase transition is discussed in a comparison with the low-temperature phase transition in L-cysteine, which is of a different type and preserves the single crystals intact (Kolesov et al. J. Phys. Chem. B, 2008, 112 (40), 12827-12839).

Phase Transitions in the Crystals of l- and dl-Cysteine on Cooling: Intermolecular Hydrogen Bonds Distortions and the Side-Chain Motions of Thiol-Groups. 1. l-Cysteine

The role of the distortion of the hydrogen bond network and of the motions of the -CH 2SH side chains in the phase transition in the orthorhombic L-cysteine ( (+)NH 3-CH(CH 2SH)-COO (-)) on cooling and the reverse transformation on heating is discussed. The extended character of the phase transition, which was recently discovered by adiabatic calorimetry [ J. Phys. Chem. B 2007, 111, 9186 ], and its very high sensitivity to the thermal prehistory of the sample could be interpreted based on the changes in the polarized Raman spectra measured for the single-crystals in several orientations in the temperature range 3-300 K and precise diffraction data on the changes in intramolecular conformations and intermolecular hydrogen bonding. In the low-temperature phase the SH...S hydrogen bonds dominate as compared to the weaker SH...O contacts, and at ambient temperature the situation is inverse. The transition from one phase to another goes via a series of states differing in conformations of the cysteine zwitterions and the intermolecular contacts of the thiol-group. Motions of different molecular fragments (NH 3 (+), CH 2, CH, SH) are activated at different temperatures. Structural strain on cooling involves several dynamic processes, such as a rigid rotation of the molecule in the lattice, a rigid rotation of the NH 3 group with respect to NH 3-CH bond, and the rotation of the thiol side chain resulting in the switching of S-H hydrogen bonding from one type to another. Different NH...O hydrogen bonds forming the framework in the L-cysteine crystal structure are distorted to a different extent, and this provokes the rotation of the -CH 2SH side chains within the cavities of this framework resulting in a change in the coordination from SH...O to SH...S at low temperatures. The results are interesting for understanding the polymorphism of molecular crystals and the factors determining their dynamics and structural instability, and also for biophysical chemistry, since the properties of the hydrogen bonded thiole-groups in biomolecules can be mimicked using L-cysteine in the crystalline state, variations in temperature and pressure serving as powerful tools, to modify the intramolecular conformations and the intermolecular hydrogen bonding.