An analytical potential of capillary zone electrophoresis (CZE) with enhanced sample loadability (a 200nL injection volume) in determination of alkaline hydrolysis products of isatin-β-thiosemicarbazone (IBT), a compound with important biological activity, has been studied. The CZE separation conditions for a complete resolution of transformation products, i.e. 2-aminophenylglyoxalate, 2-(2-aminophenyl)-2-semicarbazonoethane, anthranilate and E-Z geometric isomers of 2-(2-aminophenyl)-2-thiosemicarbazonoethane, have been optimized. CZE separations with UV detection at 240nm were performed using glycine running buffer at high pH (9.2) and containing an uncharged β-cyclodextrin as a complexing agent. High sensitivity (with detection limits ranging from 0.1 to 1.2μM), good repeatability (RSD of migration times less than 0.4% and 0.4–3.4% RSD of peak areas) and linearity over two orders of magnitude were achieved for the compounds studied. The employed CZE method, characterized by simple sample handling (only dilution step needed) and total analysis time of less than 15min, has been applied successfully to time monitoring of the transformation of IBT in alkaline media. Under optimized CZE conditions, the effect of pH of reaction media, implemented by different concentration of NaOH (0.1–100mM), on the course of the alkaline hydrolysis of IBT was studied in this respect, as well.