Methane Oxidation Potential Research Articles

Sediment Properties Drive Spatial Variability of Potential Methane Production and Oxidation in Small Streams

AbstractEmissions of the potent greenhouse gas methane (CH4) from streams and rivers are a significant component of global freshwater methane emissions. The distribution of CH4 production and oxidation within stream sections and in vertical sediment profiles is not well understood, and the environmental controls on CH4 production and emission in such systems create a significant challenge for assessing larger‐scale dynamics. Here we investigate factors driving the spatial variability of sediment potential methane production (PMP) and potential methane oxidation (PMO) in a temperate stream network in Germany. PMP was highly variable, ranging from 5 × 10−4 to 28.58 μg CH4 gDW−1 d−1 and PMO ranged from 0.43 μg CH4 gDW−1 d−1 to 14.41 μg CH4 gDW−1 d−1. Important drivers of spatial variability of PMP and PMO in the sediments of the stream main‐stem were related to fine sediment fraction and organic carbon content. At smaller spatial scale, that is, in a sub‐catchment stream section, the drivers were more complex and included sediment nitrogen and organic carbon content, as well as porewater dissolved organic carbon, dissolved organic matter quality, and metal concentrations. As with reservoirs and impounded rivers, fine sediment deposition and organic carbon content were found to be key controls on the spatial variability of CH4 production and oxidation. These findings enhance our understanding of CH4 dynamics, improve the potential for identifying CH4 production hotspots in small streams, and provide a potential means for upscaling emission rates in larger‐scale assessments.

Rational utilization of leguminous green manure to mitigate methane emissions by influencing methanogenic and methanotrophic communities

Although rice straw return is widely recommended for maintaining or improving soil fertility and rice yields, it inevitably increases methane (CH4) emissions. Effective measures to mitigate CH4 emissions while guaranteeing grain yields are urgently needed. A 2-year mesocosm experiment was conducted. Six management systems, i.e., no residue (traditional management, CF), 100% rice straw (a popular practice among farmers, FR), 50% rice straw (F1/2R), leguminous green manure (FM), mixture of leguminous green manure and 100% rice straw (FMR), and a mixture of leguminous green manure and 50% rice straw (FM1/2R), were used. Compared with the CF, the organic residue returns could effectively improve rice productivity but increase the CH4 emissions. Notably, when compared with the FR, both F1/2R and FM could reduce the CH4 emissions, with equal crop yields, and FM1/2R not only increased the rice yields but also reduced the CH4 emissions, whereas FMR increased the rice yields and the CH4 emissions. Applications of organic residues significantly increased the soil methane production potentials (MPPs), methane oxidation potentials (MOPs), the abundances of methanogens and methanotrophs, and changed methanogenic and methanotrophic community structures in comparison with the CF. The partial least squares path model (PLS-PM) results showed that the MPPs had a strong direct effect on CH4 emissions, whereas an abundance of methanogens could serve as a proxy for predicting CH4 emissions. Moreover, relatively high MOPs associated with high Type I/Type II methanotroph ratios and relatively low dissolved organic carbon (DOC) concentrations were found to be central in lowering CH4 emission fractions under the F1/2R and FM1/2R treatments. Above all, the combined utilization of leguminous green manure and rice straw exhibited potential prospects for the enhancement of rice yields and for the mitigation of CH4 emissions, and the practice of mixing leguminous green manure with 50% rice straw performed the best of the treatments tested.

Succession of bacterial community and methanotrophy during lake shrinkage

The shrinkage of vast inland lakes affects microbially mediated soil biogeochemical processes, which are critical for maintaining ecosystem sustainability, such as microbial diversity and a balanced CH4 budget. Here we aimed to elucidate shifts in the bacterial community and methanotrophy during the shrinkage of a saline lake. Sediments and soils along a gradient transecting a saline lake, saline riparian land, and grassland were collected. The succession of microbial communities was characterized by high-throughput sequencing of the V4-V5 region of 16S rRNA genes coupled to non-metric multidimensional scaling (NMDS), linear discriminant effect size (LEfSe), community assembly, and co-occurrence network analyses. We further incubated these samples under a 10% CH4 (v/v) atmospheric condition to determine the response of methane oxidation potentials and of methanotrophs to lake shrinkage by using pmoA-based qPCR and amplicon sequencing. LEfSe and NMDS analyses showed significant differences in bacterial communities among 3 stages of lake shrinkage. The microbial taxa with the highest increase were phylogenetically affiliated with unclassified Rhizobiales, Panacagrimonas, and Pseudomonas in saline and grassland soils when compared with sediments. Microbial community assembly was largely determined by deterministic rather than stochastic processes (NTI > 2). The drastic increase of Methylocystis-like (type II) methanotrophs was observed during lake shrinkage, while type I methanotrophs showed a decreasing trend. However, upon consuming high-concentration methane of about 10%, type I methanotrophs dominated methane-oxidizing communities in lake sediment (Methylomonas), riparian saline soil (Methylomicrobium), and grassland soil (Methylobacter). Structural equation model identified soil pH, C/N ratio, and soil texture as key factors affecting methane oxidation rates and the methanotrophic community. Lake shrinkage showed profound impacts on the overall bacterial communities and methane oxidizers. Soil physico-chemical properties likely shaped the bacterial community and phylogenetically distinct methanotrophs during lake shrinkage.

Magnitude and Drivers of Potential Methane Oxidation and Production across the Tibetan Alpine Permafrost Region

Methane (CH4) dynamics across permafrost regions is critical in determining the magnitude and direction of permafrost carbon (C)-climate feedback. However, current studies are mainly derived from the Arctic area, with limited evidence from other permafrost regions. By combining large-scale laboratory incubation across 51 sampling sites with machine learning techniques and bootstrap analysis, here, we determined regional patterns and dominant drivers of CH4 oxidation potential in alpine steppe and meadow (CH4 sink areas) and CH4 production potential in swamp meadow (CH4 source areas) across the Tibetan alpine permafrost region. Our results showed that both CH4 oxidation potential (in alpine steppe and meadow) and CH4 production potential (in swamp meadow) exhibited large variability across various sampling sites, with the median value being 8.7, 9.6, and 11.5 ng g-1 dry soil h-1, respectively. Our results also revealed that methanotroph abundance and soil moisture were two dominant factors regulating CH4 oxidation potential, whereas CH4 production potential was mainly affected by methanogen abundance and the soil organic carbon content, with functional gene abundance acting as the best explaining variable. These results highlight the crucial role of microbes in regulating CH4 dynamics, which should be considered when predicting the permafrost C cycle under future climate scenarios.

Small wetted proportion of drip irrigation and non-mulched treatment with manure application enhanced methane uptake in upland field

Methane oxidation in upland areas plays a critical role in the global methane budget. A three-year field experiment was conducted to investigate the effects of two soil surface treatments including soil covered with black plastic film mulch (BM) and non-mulched treatment (NM), three fertilizer treatments including chemical NPK fertilizer (CF), cattle manure (CM) and their combined application of 50% chemical NPK fertilizer and 50% cattle manure (CF+CM), and three soil wetted proportion levels under drip irrigation including: 35% (P1), 55% (P2) and 75% (P3) on methane oxidation in potato field in the arid area of northwestern China. Results showed that seasonal cumulative methane uptake value was 1.1–4.9 kg hm−2 in potato upland fields. BM treatment decreased seasonal cumulative methane uptake by 17%–50% compared to NM treatment through increasing average soil temperature by 2.0–2.5 °C, increasing average irrigation interval by 0–15% and its barricade effect of gas exchange. CM treatment increased seasonal cumulative methane uptake by 7%–9% and 14%–108% in contrast to CF+CM treatment and CF treatment, respectively, due to the low nitrogen content under CM treatment. Different soil wetted proportions didn't significantly affect methane oxidation, while 35% of soil wetted proportion had the greatest methane oxidation rate. Methane flux was quadratically correlated (p = 0.001) to soil matric potential, and the optimal soil matric potential for methane oxidation was −24 kPa. In summary, this study investigated methane uptake in potato farmland contributing to methane flux budget estimation. Manure applied without mulch had more advantage on methane oxidation, and a soil wetted proportion level of 35% was recommended in this study, for favorable for methane oxidation.

Niche partitioning of methane-oxidizing bacteria along the oxygen-methane counter gradient of stratified lakes.

Lakes are a significant source of atmospheric methane, although methane-oxidizing bacteria consume most methane diffusing upward from anoxic sediments. Diverse methane-oxidizing bacteria form an effective methane filter in the water column of stratified lakes, yet, niche partitioning of different methane-oxidizing bacteria along the oxygen-methane counter gradient remains poorly understood. In our study, we reveal vertical distribution patterns of active methane-oxidizing bacteria along the oxygen-methane counter gradient of four lakes, based on amplicon sequencing analysis of 16S rRNA and pmoA genes, and 16S rRNA and pmoA transcripts, and potential methane oxidation rates. Differential distribution patterns indicated that ecologically different methane-oxidizing bacteria occupied the methane-deficient and oxygen-deficient part above and below the oxygen-methane interface. The interface sometimes harbored additional taxa. Within the dominant Methylococcales, an uncultivated taxon (CABC2E06) occurred mainly under methane-deficient conditions, whereas Crenothrix-related taxa preferred oxygen-deficient conditions. Candidatus Methylomirabilis limnetica (NC10 phylum) abundantly populated the oxygen-deficient part in two of four lakes. We reason that the methane filter in lakes is structured and that methane-oxidizing bacteria may rely on niche-specific adaptations for methane oxidation along the oxygen-methane counter gradient. Niche partitioning of methane-oxidizing bacteria might support greater overall resource consumption, contributing to the high effectivity of the lacustrine methane filter.

Denitrifying anaerobic methane oxidation in intertidal marsh soils: Occurrence and environmental significance

Denitrifying anaerobic methane oxidation (DAMO), consisting of nitrite-dependent DAMO (nitrite-DAMO) and nitrate-dependent DAMO (nitrate-DAMO), has recently been discovered and considered an important link between carbon and nitrogen cycles. In this work, we investigated biodiversity, abundance, and potential methane (CH4) oxidation activity of nitrite-DAMO bacteria and nitrate-DAMO archaea in intertidal marsh soil cores, based on molecular and stable isotope tracing methods. Results evidenced the co-occurrence and vertical stratification of DAMO bacteria and archaea in intertidal marsh soils, with higher biodiversity of DAMO archaea compared with DAMO bacteria. The abundance of DAMO bacterial pmoA gene (8.2 × 105–3.0 × 107 copies g−1 dry soil) was approximate to that of DAMO archaeal mcrA gene (3.0 × 105–3.9 × 107 copies g−1 dry soil) in the intertidal marsh soil cores. Stable isotope experiments showed that DAMO bacteria and archaea were both active in the intertidal marshes, with CH4 oxidation potential of 0.1–3.8 nmol 13CO2 g−1 dry soil day−1 and 0.1–4.1 nmol 13CO2 g−1 dry soil day−1, respectively. The relative importance (including the abundance and CH4 oxidation activity) of DAMO bacteria and archaea showed significant vertical variations, with more contribution by DAMO bacteria at the soil-tidal water interface and soil-groundwater interface layers of the soil cores, which are largely due to the influence of tidal dynamics. In addition to playing an important role as CH4 sink, DAMO process was also a non-negligible pathway of nitrogen removal in intertidal marsh soils, with an estimated nitrogen removal rate of 0.4–10.1 nmol N g−1 dry soil day−1. Overall, these results illustrated the occurrence and environmental significance of DAMO bioprocess in intertidal marshes.

A geochemical and multi-isotope modeling approach to determine sources and fate of methane in shallow groundwater above unconventional hydrocarbon reservoirs

Due to increasing concerns over the potential impact of shale gas and coalbed methane (CBM) development on groundwater resources, it has become necessary to develop reliable tools to detect any potential pollution associated with hydrocarbon exploitation from unconventional reservoirs. One of the key concepts for such monitoring approaches is the establishment of a geochemical baseline of the considered groundwater systems. However, the detection of methane is not enough to assess potential impact from CBM and shale gas exploitation since methane in low concentrations has been found to be naturally ubiquitous in many groundwater systems. The objective of this study was to determine the methane sources, the extent of potential methane oxidation, and gas-water-rock-interactions in shallow aquifers by integrating chemical and isotopic monitoring data of dissolved gases and aqueous species into a geochemical PHREEQC model. Using data from a regional groundwater observation network in Alberta (Canada), the model was designed to describe the evolution of the concentrations of methane, sulfate and dissolved inorganic carbon (DIC) as well as their isotopic compositions (δ34SSO4, δ13CCH4 and δ13CDIC) in groundwater subjected to different scenarios of migration, oxidation and in situ generation of methane. Model results show that methane migration and subsequent methane oxidation in anaerobic environments can strongly affect its concentration and isotopic fingerprint and potentially compromise the accurate identification of the methane source. For example elevated δ13CCH4 values can be the result of oxidation of microbial methane and may be misinterpreted as methane of thermogenic origin. Hence, quantification of the extent of methane oxidation is essential for determining the origin of methane in groundwater. The application of this model to aquifers in Alberta shows that some cases of elevated δ13CCH4 values were due to methane oxidation resulting in pseudo-thermogenic isotopic fingerprints of methane. The model indicated no contamination of shallow aquifers by deep thermogenic methane from conventional and unconventional hydrocarbon reservoirs under baseline conditions. The developed geochemical and multi-isotopic model describing the sources and fate of methane in groundwater is a promising tool for groundwater assessment purposes in areas with shale gas and coalbed methane development.

Biochar can mitigate methane emissions by improving methanotrophs for prolonged period in fertilized paddy soils

Biochar application to fertilized paddy soils has been recommended as an effective countermeasure to mitigate methane (CH4) emissions, but its mechanism and effective duration has not yet been adequately elucidated. A laboratory incubation experiment was performed to gain insight into the combined effects of fresh and six-year aged biochar on potential methane oxidation (PMO) in paddy soils with ammonium or nitrate-amendment. Results showed that both ammonium and nitrate were essential for CH4 oxidation though high ammonium (4 mM) inhibited PMO as compared to low ammonium (1 mM and 2 mM), and that nitrate was better in promoting PMO than ammonium. Moreover, ammonium-amendment promoted type I pmoA, and nitrate-amendment enhanced type II pmoA abundance. Both fresh and aged biochar increased PMO as well as nitrification by enhancing the total, type I and type II methanotrophs as compared to the control. Increased soil PMO with mineral N input in both six-year aged biochar and fresh biochar amendment, indicating that biochar mitigated CH4 by promoting PMO for prolonged period in fertilized paddy soils.

Potential methane production and oxidation along the soil chronosequence of the Rotmoos glacier forefield

Summary Five differently developed soils aged 6, 35, 80, 150, and >5000 years with the same bedrock and the same (current) climate conditions were chosen to assess abiotic and enzymatic properties as well as methanogenic and methanotrophic activities. Most abiotic properties (dry weight, pH, soil organic matter, and ammonium content), enzyme activities (dehydrogenase [DH] activity, ammonification [AM] rate, dimethylsulfoxide reduction), and potential methane oxidation (PoMO) per gram of dry weight (DW) increased with soil age. In contrast, potential methane production (PoMP) as well as the nitrate content per gram of DW and most enzymatic properties per gram of soil organic matter (SOM) did not increase with soil age but reached its maximum in the middle-aged soils (80–150 years). Our results show that (i) microbial activity does not consequently increase with SOM content/soil age; (ii) methane production can be measured in undeveloped soils, whereas methane oxidation is more restricted to fully developed soils; and (iii) certain soil modifications (change in water content, ammonium addition) could influence potential methane production/oxidation. When considering the concurrent release of raw soil because of the melting of perpetual ice, these data could help to better understand and assess the consequences of global change.

Effects of feed input and planting of submerged aquatic vegetation on methanotrophic communities in the surface sediments of aquaculture ponds

Methanotrophs represent the only biological sink for the greenhouse gas methane, and only few studies have focused on methanotrophic communities in aquaculture ponds. Illumina high-throughput sequencing and real-time quantitative PCR were employed to profile the methanotrophic bacterial community and investigate the pmoA gene abundance in surface sediments from crab, oriental river prawn, perch, and Wuchang fish aquaculture ponds. Results revealed that Gammaproteobacteria (mainly the environmental_samples_norank genera) and Alphaproteobacteria (mainly the Methylocystis genera) were the most and second most abundant methanotrophic bacterial classes, respectively. While the species cultivated in these ponds were significantly different, the planting of submerged vegetation and the feed input were the main factors found to shape the methanotrophic bacterial community. Submerged vegetation potentially influenced methanotrophs in two ways: by increasing the alpha diversity of the methanotrophic community or by increasing methanotrophic abundance through inducing anaerobic root zone conditions, thereby increasing methane oxidation potential. The amount of feed input also influenced the methanotrophic communities in the fishponds (especially Wuchang fishponds), possibly through deposition of nitrogen, phosphorous, and organic matter (especially organic matter). These results provide preliminary biological data for the regulation of methanotrophs in aquaculture ponds in the future.

Spatial-Temporal Pattern of Sulfate-Dependent Anaerobic Methane Oxidation in an Intertidal Zone of the East China Sea.

Methane is a primary greenhouse gas which is responsible for global warming. The sulfate-dependent anaerobic methane oxidation (S-AOM) process catalyzed by anaerobic methanotrophic (ANME) archaea and sulfate-reducing bacteria (SRB) is a vital link connecting the global carbon and sulfur cycles, and it is considered to be the overriding methane sink in marine ecosystem. However, there have been few studies regarding the role of S-AOM process and the distribution of ANME archaea in intertidal ecosystem. The intertidal zone is a buffer zone between sea and land and plays an important role in global geochemical cycle. In the present study, the abundance, potential methane oxidation rate, and community structure of ANME archaea in the intertidal zone were studied by quantitative PCR, stable isotope tracing method and high-throughput sequencing. The results showed that the potential S-AOM activity ranged from 0 to 0.77 nmol 13CO2 g-1 (dry sediment) day-1 The copy number of 16S rRNA gene of ANME archaea reached 106 ∼ 107 copies g-1 (dry sediment). The average contribution of S-AOM to total anaerobic methane oxidation was up to 34.5%, while denitrifying anaerobic methane oxidation accounted for the rest, which implied that S-AOM process was an essential methane sink that cannot be overlooked in intertidal ecosystem. The simulated column experiments also indicated that ANME archaea were sensitive to oxygen and preferred anaerobic environmental conditions. This study will help us gain a better understanding of the global carbon-sulfur cycle and greenhouse gas emission reduction and introduce a new perspective into the enrichment of ANME archaea.IMPORTANCE The sulfate-dependent anaerobic methane oxidation (S-AOM) process catalyzed by anaerobic methanotrophic (ANME) archaea and sulfate-reducing bacteria (SRB) is a vital link connecting the global carbon and sulfur cycles. We conducted a research into the spatial-temporal pattern of S-AOM process and the distribution of ANME archaea in coastal sediments collected from the intertidal zone. The results implied that S-AOM process was a methane sink that cannot be overlooked in the intertidal ecosystem. We also found that ANME archaea were sensitive to oxygen and preferred anaerobic environmental conditions. This study will help us gain a better understanding of the global carbon-sulfur cycle and greenhouse gas emission reduction and introduce a new perspective into the enrichment of ANME archaea.

Impacts of sulfanilamide and oxytetracycline on methane oxidation and methanotrophic community in freshwater sediment.

Methanotrophs are of great significance for the abatement of methane emission from anoxic environments. Antibiotics are ubiquitous in the environment and can affect microbial activity and community density and composition. However, information about the effect of antibiotics on methanotrophs is still lacking. The current study explored the influences of sulfonamides and tetracyclines on methane oxidation potential (MOP) and methanotrophic density and community structure in freshwater sediment microcosms. The addition of both sulfanilamide (SA) and oxytetracycline (OTC) could increase MOP and particulate methane monooxygenase subunit A (pmoA) gene density but decrease the number of pmoA transcripts. Both SA and OTC could also have impacts on sediment methanotrophic community structure. The antibiotic effects on MOP and methanotrophs were found to depend on the dosage and type of antibiotics. This work could provide some new insights towards the links between methane oxidation and antibiotics.

To shake or not to shake: Silicone tube approach for incubation studies on CH4 oxidation in submerged soils

Incubation experiments are the most common approach to measure methane (CH4) oxidation potential in soils from various ecosystems and land-use practices. However, the commonly used headspace CH4 injection into microcosms and the shaking of the soil slurry during incubation fully removes CH4 (soil-born) and O2 (air-born) gradients common in situ, and may also induce various errors and disturbances. As an alternative, we propose CH4 input into microcosm soils via a silicone tube located within the slurry. We hypothesized that (i) poor CH4 diffusion in slurry will be compensated by direct CH4 delivery into the slurry via a silicone tube and, consequently, (ii) shaking of microcosms can be substituted with the soil silicone tube CH4 injection.During a 29-day submerged paddy soil incubation, the highest net CH4 oxidation rate was 1.6 μg C g−1 dry soil h−1, measured between the 3rd and 7th day after injecting 13CH4 into the slurry via a silicone tube without shaking. This rate was 1.5–2.5 times faster than the respective CH4 oxidation after headspace injection without shaking (1st hypothesis supported). As expected, shaking accelerated CH4 oxidation regardless of injection methods by 3.2–3.7 times (most intensively on days 3–7) compared to headspace injection without shaking. Nonetheless, the rates were similar between silicone tube injection without shaking and headspace injection with shaking. This supports the hypothesized potential of silicone tubes to substitute the common shaking method (2nd hypothesis). Furthermore, shaking increased the incorporation of 13C from CH4 into soil organic matter and microbial biomass by 1.8–2.7 times compared with CH4 injection into tubes and the static control without tubes. This reflects an overestimation of CH4 oxidation due to shaking. We conclude that direct soil CH4 injection via silicone tubes is advantageous in incubation experiments because gas concentration gradients are maintained and thereby more realistically reflect natural soil conditions.

Anaerobic methane oxidation potential and bacteria in freshwater lakes: Seasonal changes and the influence of trophic status

Nitrite-dependent anaerobic methane oxidation (n-damo), mainly carried out by n-damo bacteria, is an important pathway for mitigating methane emission from freshwater lakes. Although n-damo bacteria have been detected in a variety of freshwater lakes, their potential and distribution, and associated environmental factors, remain unclear. Therefore, the current study investigated the potential and distribution of anaerobic methanotrophs in sediments from Erhai Lake and Dianchi Lake, two adjacent freshwater lakes in the Yunnan Plateau with different trophic status. Both lakes showed active anaerobic methane oxidation potential and harbored a high density of n-damo bacteria. Based on the n-damo pmoA gene, sediment n-damo bacterial communities mainly consisted of Candidatus Methylomirabils oxyfera and Candidatus Methylomirabils sinica, as well as novel n-damo organisms. Sediment anaerobic methane oxidation potential and the n-damo bacterial community showed notable differences among seasons and between lakes. The environmental variables associated with lake trophic status (e.g. total nitrogen, ammonia nitrogen, nitrate nitrogen, and total organic carbon) might have significant impacts on the anaerobic methane oxidation potential, as well as the abundance and community structure of n-damo bacteria. Therefore, trophic status could determine the n-damo process in freshwater lake sediment.

Exotic Spartina alterniflora invasion increases CH4 while reduces CO2 emissions from mangrove wetland soils in southeastern China

Mangroves are critical in global carbon budget while vulnerable to exotic plant invasion. Spartina alterniflora, one of typical salt marsh plant grows forcefully along the coast of China, has invaded the native mangrove habitats in Zhangjiang Estuary. However, the effects of S. alterniflora invasion on soil carbon gases (CH4 and CO2) emission from mangroves are not fully understood. Accordingly, we conducted a field experiment to investigate the soil CH4 and CO2 emission during growing seasons in 2016 and 2017 at four adjacent wetlands, namely bare mudflat (Mud), Kandelia obovata (KO), Avicennia marina (AM) and S. alterniflora (SA). Potential methane production (PMP), potential methane oxidation (PMO), functional microbial abundance and soil biogeochemical properties were measured simultaneously. Our results indicate that S. alterniflora invasion could dramatically increase soil CH4 emissions mainly due to the enhancement in PMP which facilitated by soil EC, MBC, TOC and mcrA gene abundance. Additionally, S. alterniflora invasion decreases soil CO2 emission. Both heterotrophic microbial respiration (16S rRNA) and methane oxidation (pmoA and ANME-pmoA) are responsible for CO2 emission reduction. Furthermore, S. alterniflora invasion greatly increases GWP by stimulating CH4 emissions. Thus, comparing with mangroves, invasive S. alterniflora significantly (p < 0.001) increases CH4 emission while reduces CO2 emission.

Methane-oxidizing seawater microbial communities from an Arctic shelf

Abstract. Marine microbial communities can consume dissolved methane before it can escape to the atmosphere and contribute to global warming. Seawater over the shallow Arctic shelf is characterized by excess methane compared to atmospheric equilibrium. This methane originates in sediment, permafrost, and hydrate. Particularly high concentrations are found beneath sea ice. We studied the structure and methane oxidation potential of the microbial communities from seawater collected close to Utqiagvik, Alaska, in April 2016. The in situ methane concentrations were 16.3 ± 7.2 nmol L−1, approximately 4.8 times oversaturated relative to atmospheric equilibrium. The group of methane-oxidizing bacteria (MOB) in the natural seawater and incubated seawater was &gt; 97 % dominated by Methylococcales (γ-Proteobacteria). Incubations of seawater under a range of methane concentrations led to loss of diversity in the bacterial community. The abundance of MOB was low with maximal fractions of 2.5 % at 200 times elevated methane concentration, while sequence reads of non-MOB methylotrophs were 4 times more abundant than MOB in most incubations. The abundances of MOB as well as non-MOB methylotroph sequences correlated tightly with the rate constant (kox) for methane oxidation, indicating that non-MOB methylotrophs might be coupled to MOB and involved in community methane oxidation. In sea ice, where methane concentrations of 82 ± 35.8 nmol kg−1 were found, Methylobacterium (α-Proteobacteria) was the dominant MOB with a relative abundance of 80 %. Total MOB abundances were very low in sea ice, with maximal fractions found at the ice–snow interface (0.1 %), while non-MOB methylotrophs were present in abundances similar to natural seawater communities. The dissimilarities in MOB taxa, methane concentrations, and stable isotope ratios between the sea ice and water column point toward different methane dynamics in the two environments.

Measuring methane emissions from a UK landfill using the tracer dispersion method and the influence of operational and environmental factors

The methane emissions from a landfill in south-east, UK were successfully quantified during a six-day measurement campaign using the tracer dispersion method. The fair weather conditions made it necessary to perform measurements in the late afternoon and in the evening when the lower solar flux resulted in a more stable troposphere with a lower inversion layer. This caused a slower mixing of the gasses, but allowed plume measurements up to 6700 m downwind from the landfill. The average methane emission varied between 217 ± 14 and 410 ± 18 kg h−1 within the individual measurement days, but the measured emission rates were higher on the first three days (333 ± 27, 371 ± 42 and 410 ± 18 kg h−1) compared to the last three days (217 ± 14, 249 ± 20 and 263 ± 22 kg h−1). It was not possible to completely isolate the extent to which these variations were a consequence of measuring artefacts, such as wind/measurement direction and measurement distance, or from an actual change in the fugitive emission. Such emission change is known to occur with changes in the atmospheric pressure. The higher emissions measured during the first three days of the campaign were measured during a period with an overall decrease in atmospheric pressure (from approximately 1014 mbar on day 1 to 987 mbar on day 6). The lower emissions measured during the last three days of the campaign were carried out during a period with an initial pressure increase followed by a period of slowly reducing pressure. The average daily methane recovery flow varied between 633 and 679 kg h−1 at STP (1 atm, 0 °C). The methane emitted to the atmosphere accounted for approximately 31% of the total methane generated, assuming that the methane generated is the sum of the methane recovered and the methane emitted to the atmosphere, thus not including a potential methane oxidation in the landfill cover soil.

Unusual Genomic Traits Suggest Methylocystis bryophila S285 to Be Well Adapted for Life in Peatlands.

The genus Methylocystis belongs to the class Alphaproteobacteria, the family Methylocystaceae, and encompasses aerobic methanotrophic bacteria with the serine pathway of carbon assimilation. All Methylocystis species are able to fix dinitrogen and several members of this genus are also capable of using acetate or ethanol in the absence of methane, which explains their wide distribution in various habitats. One additional trait that enables their survival in the environment is possession of two methane-oxidizing isozymes, the conventional particulate methane monooxygenase (pMMO) with low-affinity to substrate (pMMO1) and the high-affinity enzyme (pMMO2). Here, we report the finished genome sequence of Methylocystis bryophila S285, a pMMO2-possessing methanotroph from a Sphagnum-dominated wetland, and compare it to the genome of Methylocystis sp. strain SC2, which is the first methanotroph with confirmed high-affinity methane oxidation potential. The complete genome of Methylocystis bryophila S285 consists of a 4.53 Mb chromosome and one plasmid, 175 kb in size. The genome encodes two types of particulate MMO (pMMO1 and pMMO2), soluble MMO and, in addition, contains a pxmABC-like gene cluster similar to that present in some gammaproteobacterial methanotrophs. The full set of genes related to the serine pathway, the tricarboxylic acid cycle as well as the ethylmalonyl-CoA pathway is present. In contrast to most described methanotrophs including Methylocystis sp. strain SC2, two different types of nitrogenases, that is, molybdenum–iron and vanadium–iron types, are encoded in the genome of strain S285. This unique combination of genome-based traits makes Methylocystis bryophila well adapted to the fluctuation of carbon and nitrogen sources in wetlands.

Impact of Peat Mining and Restoration on Methane Turnover Potential and Methane-Cycling Microorganisms in a Northern Bog.

Ombrotrophic peatlands are a recognized global carbon reservoir. Without restoration and peat regrowth, harvested peatlands are dramatically altered, impairing their carbon sink function, with consequences for methane turnover. Previous studies determined the impact of commercial mining on the physicochemical properties of peat and the effects on methane turnover. However, the response of the underlying microbial communities catalyzing methane production and oxidation have so far received little attention. We hypothesize that with the return of Sphagnum spp. postharvest, methane turnover potential and the corresponding microbial communities will converge in a natural and restored peatland. To address our hypothesis, we determined the potential methane production and oxidation rates in natural (as a reference), actively mined, abandoned, and restored peatlands over two consecutive years. In all sites, the methanogenic and methanotrophic population sizes were enumerated using quantitative PCR (qPCR) assays targeting the mcrA and pmoA genes, respectively. Shifts in the community composition were determined using Illumina MiSeq sequencing of the mcrA gene and a pmoA-based terminal restriction fragment length polymorphism (t-RFLP) analysis, complemented by cloning and sequence analysis of the mmoX gene. Peat mining adversely affected methane turnover potential, but the rates recovered in the restored site. The recovery in potential activity was reflected in the methanogenic and methanotrophic abundances. However, the microbial community composition was altered, being more pronounced for the methanotrophs. Overall, we observed a lag between the recovery of the methanogenic/methanotrophic activity and the return of the corresponding microbial communities, suggesting that a longer duration (>15 years) is needed to reverse mining-induced effects on the methane-cycling microbial communities.IMPORTANCE Ombrotrophic peatlands are a crucial carbon sink, but this environment is also a source of methane, an important greenhouse gas. Methane emission in peatlands is regulated by methane production and oxidation catalyzed by methanogens and methanotrophs, respectively. Methane-cycling microbial communities have been documented in natural peatlands. However, less is known of their response to peat mining and of the recovery of the community after restoration. Mining exerts an adverse impact on potential methane production and oxidation rates and on methanogenic and methanotrophic population abundances. Peat mining also induced a shift in the methane-cycling microbial community composition. Nevertheless, with the return of Sphagnum spp. in the restored site after 15 years, methanogenic and methanotrophic activity and population abundance recovered well. The recovery, however, was not fully reflected in the community composition, suggesting that >15 years are needed to reverse mining-induced effects.