Modeling and mapping the distribution of suitable habitats of aquatic plants are critical for assessing the impact of factors like changing climate on species habitat range shifts, declines, and expansions. Nymphaea is an aquatic perennial herb considered valuable because of its ornamental, economic, medicinal, and ecological importance. In India, the geographical distribution of Nymphaea is diverse, and the suitable habitats of individual species are vulnerable to the changing climate and global warming effects. Despite its increased vulnerability, only a few limited conservation efforts in aquatic environments are being made to date. In several places, the distribution of Nymphaea has been impacted by both anthropogenic and climate-related disturbances. A comprehensive strategy will be needed to meet the socio-ecological challenge of Nymphaea conservation. In this study, we employed maximum entropy (MaxEnt) method to assess how climate change affects the distribution of Nymphaea suitable habitat. The occurrence records of Nymphaea were collected from primary surveys, Global Biodiversity Information Facility (GBIF), and published works. Bioclimatic variables obtained from the Coupled Model Intercomparison Project (CMIP6) were employed as predictor variables in distribution modeling. The projections were made using three SSPs (stringent mitigation scenarios) for the future period of 2050. Our results showed shifts in the suitability ranges of Nymphaea under different projection scenarios. The study provides information about the distribution of suitable habitats for Nymphaea in India, which may be helpful for ongoing efforts to conserve and manage the aquatic plants, particularly in areas that are losing suitable climate conditions.