Potato Tubers Research Articles

Feature Fusion GAN Based Virtual Staining on Plant Microscopy Images.

Virtual staining of microscopy specimens using GAN-based methods could resolve critical concerns of manual staining process as displayed in recent studies on histopathology images. However, most of these works use basic-GAN framework ignoring microscopy image characteristics and their performance were evaluated based on structural and error statistics (SSIM and PSNR) between synthetic and ground-truth without considering any color space although virtual staining deals with color transformation. Besides, major aspects of staining, like color, contrast, focus, image-realness etc. were totally ignored. However, modifications of GAN architecture for virtual staining might be suitable by incorporating microscopy image features. Further, its successful implementation need to be examined by considering various aspects of staining process. Therefore, we designed, a new feature-fusion-GAN for virtual staining followed by performance assessment by framing a state-of-the-art multi-evaluation framework that includes numerous metrics in -qualitative (based on histogram-correlation of color and brightness); quantitative (SSIM and PSNR); focus aptitude (Brenner metrics and Spectral-Moments); and influence on perception (semantic perceptual influence score). For, experimental validation cell boundaries were highlighted by two different staining reagents, Safranin-O and Toluidine-Blue-O on plant microscopy images of potato tuber. We evaluated virtually stained image quality w.r.t ground-truth in RGB and YCbCr color spaces based on defined metrics and results are found very consistent. Further, impact of feature fusion has been demonstrated. Collectively, this study could be a baseline towards guiding architectural upgrading of deep pipelines for virtual staining of diverse microscopy modalities followed by future benchmark methodology or protocols.

Resistance of the CRISPR-Cas13a Gene-Editing System to Potato Spindle Tuber Viroid Infection in Tomato and Nicotiana benthamiana.

Gene-editing technology, specifically the CRISPR-Cas13a system, has shown promise in breeding plants resistant to RNA viruses. This system targets RNA and, theoretically, can also combat RNA-based viroids. To test this, the CRISPR-Cas13a system was introduced into tomato plants via transient expression and into Nicotiana benthamiana through transgenic methods, using CRISPR RNAs (crRNAs) targeting the conserved regions of both sense and antisense genomes of potato spindle tuber viroid (PSTVd). In tomato plants, the expression of CRISPR-Cas13a and crRNAs substantially reduced PSTVd accumulation and alleviated disease symptoms. In transgenic N. benthamiana plants, the PSTVd levels were lower as compared to wild-type plants. Several effective crRNAs targeting the PSTVd genomic RNA were also identified. These results demonstrate that the CRISPR-Cas13a system can effectively target and combat viroid RNAs, despite their compact structures.

Influence of Germination Time on the Morphological, Structural, Vibrational, Thermal and Pasting Properties of Potato Starch from Solanum tuberosum Phureja Group

AbstractThis work focuses on the study of the physicochemical changes that take place during a short germination period in flours and starches of the Creole potato tuber. To this end, the changes in the composition of flours and the structural, thermal, vibrational, functional and pasting changes of the isolated starches from germinated potatoes were evaluated during the 12-day germination period, measured every 4 days. The water absorption index (WAI) and the swelling powder showed no significant changes. Germination resulted in a decrease in fat and ash content, but an increase in protein and amylose content. Scanning electron microscopy (SEM) showed no changes in the morphology of the starch during germination. X-ray diffraction showed that isolated Creole potato starch contains nanocrystals with hexagonal crystal structure, which are not affected by germination. Differential scanning calorimetry (DSC) shows a shift of the gelatinization peak to the right, which could be attributed to the concentration effect. The pasting profiles of the isolated starches show no significant changes, indicating that the starch granules do not suffer any external damage due to the enzymatic process during germination and that the final viscosity behaves like a hydrogel.

Updated aspects of alpha-Solanine as a potential anticancer agent: Mechanistic insights and future directions.

Cancer remains a critical global health challenge, with limited progress in reducing mortality despite advancements in diagnosis and treatment. The growing resistance of tumors to existing chemotherapy exacerbates this burden. In response, the search for new anticancer compounds from plants has intensified, given their historical success in yielding effective treatments. This review focuses on α-solanine, a glycoalkaloid primarily derived from potato tubers and nightshade family plants, recognized for its diverse biological activities, including anti-allergic, antipyretic, anti-inflammatory, anti-diabetic, and antibiotic properties. Recently, α-solanine has gained attention as a potential anticancer agent. Utilizing resources like PubMed/MedLine, ScienceDirect, Web of Science, Scopus, the American Chemical Society, Google Scholar, Springer Link, Wiley, and various commercial websites, this review consolidates two decades of research on α-solanine's anticancer effects and mechanisms against nine different cancers, highlighting its role in modulating various signaling pathways. It also discusses α-solanine's potential as a lead compound in cancer therapy. The abundant availability of potato peel, often discarded as waste or sold cheaply, is suggested as a sustainable source for large-scale α-solanine extraction. The study concludes that α-solanine holds promise as a standalone or adjunctive cancer treatment. However, further research is necessary to optimize this lead compound and mitigate its toxicity through various strategies.

Effect of Edible Wax on Postharvest Greening of Potato Tubers during Light Exposure

Effect of Edible Wax on Postharvest Greening of Potato Tubers during Light Exposure

<i>Fusarium</i> species affecting potato tubers and tomato fruits in Uganda

Irish potato and tomato are among the most widely cultivated crops in Uganda. In 2020, samples of affected potato tubers and tomato fruits were collected from farms across four regions in Uganda for analysis. A total of 22 strains of Fusarium spp. were isolated from potato tubers and seven strains were isolated from tomato fruits. Identification of the fungal species was accomplished using cultural and morphological characteristics, as well as DNA sequencing targeting specific regions: ITS1–5.8S–ITS2, parts of the elongation factor 1 (tef 1) gene, and beta-tubulin (β-tub) gene. The analysis of the isolated strains from potato tubers revealed the presence of Fusarium incarnatum-equisety species complex, F. sambucinum species complex, F. oxysporum species complex, F. solani species complex. Additionally, F. incarnatum-equiseti species complex was detected in tomato fruits. All the investigated strains exhibited the ability to successfully infect both injured tomato fruits and potato tubers. Tested strains were susceptible to difenoconazole (ЕС50 = 0.08–8.5 mg/L) and thiabendazole (EC50 = 0.67–5.1 mg/L).

Molecular Insights into the Role of Sterols in Microtuber Development of Potato Solanum tuberosum L.

Potato tubers are reproductive and storage organs, enabling their survival. Unraveling the molecular mechanisms that regulate tuberization is crucial for understanding how potatorespond to environmental stress situations and for potato breeding. Previously, we did a transcriptomic analysis of potato microtuberization without light. This showed that important cellular processes like ribosomal proteins, cell cycle, carbon metabolism, oxidative stress, fatty acids, and phytosterols (PS) biosynthesis were closely connected in a protein-protein interaction (PPI) network. Research on PS function during potato tuberization has been scarce. PS plays a critical role in regulating membrane permeability and fluidity, and they are biosynthetic precursors of brassinosteroids (BRs) in plants, which are critical in regulating gene expression, cell division, differentiation, and reproductive biology. Within a PPI network, we found a module of 15 genes involved in the PS biosynthetic process. Darkness, as expected, activated the mevalonate (MVA) pathway. There was a tight interaction between three coding gene products for HMGR3, MVD2, and FPS1, and the gene products that synthetize PS, including CAS1, SMO1, BETAHSD, CPI1, CYP51, FACKEL, HYDRA1, SMT2, SMO2, STE1, and SSR1. Quantitative real-time polymerase chain reaction (qRT-PCR) confirmed the expression analysis of ten specific genes involved in the biosynthesis of PS. This manuscript discusses the potential role of genes involved in PS biosynthesis during microtuber development.

Metabolic engineering of crocins and picrocrocin apocarotenoids in potato group phureja

AbstractThe stigmas of Crocus sativus accumulate the exclusive apocarotenoids crocin and picrocrocin, which are dried and desiccated to make commercial saffron. In addition to providing characteristic organoleptic qualities, saffron apocarotenoids are valuable compounds in the pharmaceutical and health industries. Previously, we developed Desirée potato tubers enriched with these apocarotenoids which also showed increased potential benefits for human health. In the current study, Solanum tuberosum (S. tuberosum) Group Phureja 01H15 which accumulates high levels of zeaxanthin, was engineered to produce saffron apocarotenoids to increase the levels of these metabolites in potato tubers using a construct namely O6, which contains the CsCCD2L, UGT74AD1, and UGT709G1 genes necessary for the biosynthesis of crocin and picrocrocin under the control of the patatin promoter. Here, we obtained transgenic S. tuberosum Group Phureja 01H15 lines with high concentrations of crocins and picrocrocin (up to 3.648 mg/g DW, 2.345 mg/g DW, respectively), which were up to 10 and 3 times higher than those obtained in the Desirée background, respectively. Furthermore, we performed transcriptome analyses of tubers from Desirée and 01H15 wild type and carrying O6 construct. Differentially expressed gene analysis revealed transcript changes not only on tuber carotenoid and apocarotenoid genes but also in other related pathways, suggesting a possible role in isoprenoid metabolism remodeling. Thus, this heterologous system serves as a robust platform for the production of these valuable metabolites.

Genotypic and Phenotypic Analyses Show Ralstonia solanacearum Cool Virulence is a Quantitative Trait Not Restricted to "Race 3 biovar 2".

Most Ralstonia solanacearum species complex strains cause bacterial wilts in tropical or subtropical zones, but the group known as Race 3 biovar 2 (R3bv2) is cool virulent and causes potato brown rot at lower temperatures. R3bv2 has invaded potato-growing regions around the world but is not established in the United States. Phylogenetically, R3bv2 corresponds to a subset of the R. solanacearum phylotype IIB clade, but little is known about the distribution of the cool virulence phenotype within phylotype IIB. Therefore, genomes of 76 potentially cool virulent phylotype IIB strains and 30 public genomes were phylogenetically analyzed. A single clonal lineage within the sequevar 1 subclade of phylotype IIB that originated in South America has caused nearly all brown rot outbreaks worldwide. To correlate genotypes with relevant phenotypes, we quantified virulence of ten Ralstonia strains on tomato and potato at both 22°C and 28°C. Cool virulence on tomato did not predict cool virulence on potato. We found that cool virulence is a quantitative trait. Strains in the sequevar 1 pandemic clonal lineage caused the most disease, while other R3bv2 strains were only moderately cool virulent. However, some non-R3bv2 strains were highly cool virulent and aggressively colonized potato tubers. Thus, cool virulence is not consistently correlated with strains historically classified as R3bv2 group. To aid detection of sequevar 1 strains, this group was genomically delimited in the LINbase web server and a sequevar 1 diagnostic primer pair was developed and validated. We discuss implications of these results for the R3bv2 definition.

Effects of application methods of microbial mixture on early blight disease (Alternaria solani) and growth of potato

Early blight (Alternaria solani) is one of important diseases in potato in Indonesia. In previous study, a microbial consortium (Trichoderma harzianum, Bacillus subtilis and Pseudomonas sp.) suppressed the bacterial wilt disease in potato. For application, the microbial consortium was mixed with compost (10%). As the microbial consortium is originally intended for controlling soil-borne diseases, this study examined the ability of the microbial consortium to suppress early blight disease and the effects of application methods on its efficacy. The application methods examined were the methods that targeted for soil-borne as well as airborne diseases. The experiment was conducted in a greenhouse at the Department of Plants and Diseases, Faculty of Agriculture, Universitas Padjadjaran, Sumedang, West Java, Indonesia. The experiment used Randomized Complete Block Design with 10 treatments and three replications. The treatments included application of microbes mixed with compost in planting hole solely or in combination with soaking the potato tubers in suspension of the microbes, drenching water extract of the mixture at 2, 4, 6 weeks after planting (WAP) with or without foliar application of the water extract. The result showed that application method influenced the abilities of the microbial mixture in suppressing early blight disease and supporting the potato growth. Even though the application of microbe-compost in planting medium inhibited the development of early blight disease by 37.8-39.5%, the regular foliar spray of the water extract of the mixture enhanced the disease suppression. Combination between application of the microbe-compost in the planting hole, drenching its water extract at 2, 4, 6 WAP and weekly foliar spray of the water extract suppressed early blight disease by 80.8%. This combination of application methods also supported better plant height, numbers of potato leaflets, roots fresh weight and production of potato tuber.

Mycotoxin Accumulation in Dry Rot Potato Tubers from Algeria and Toxigenic Potential of Associated Isolates of Fusarium Genus.

The presence of different mycotoxins in 232 tuber samples exhibiting dry rot symptoms and their associated Fusarium strains from two production sites in Algeria was investigated. LC-MS/MS was used to simultaneously detect and quantify 14 mycotoxins, including trichothecenes and non-trichothecenes. A total of 49 tubers were contaminated with at least one mycotoxins, including T-2, HT-2, Diacetoxyscirpenol (DAS), 15-acetoxyscirpenol (15-AS) and Beauvericin (BEA). Positive samples from the Bouira region had a significantly higher level of toxin contamination compared to Ain Defla (56.34% and 5.59%, respectively). A total of 283 Fusarium strains were isolated: 155 from Bouira and 128 from Ain Defla. These strains were evaluated for their ability to produce the targeted mycotoxins. The results showed that 61.29% and 53.9% of strains originate from Bouira and Ain Defla regions were able to produce Nivalenol, Fusarenone-X, DAS, 15-AS, Neosolaniol, BEA and Zearalenone. The phylogenetic analysis of the conserved ribosomal internal transcribed spacer (ITS) sequences of 29 Fusarium strains, representative of the recorded mycotoxins profiles, was distributed into 5 Fusarium species complexes (SC): F. incarnatum-equiseti SC (FIESC), F. sambucinum SC (FSAMSC), F. oxysporum SC (FOSC), F. tricinctum SC (FTSC) and F. redolens SC (FRSC). This is the first study determining multiple occurrences of mycotoxins contamination associated to Fusarium dry rot of potato in Algeria and highlights fungal potential for producing trichothecene and non-trichothecens mycotoxins.

The Influence of Some Reactive Oxygen Species Treatments on the Yield and Changes in the Chemical Composition of Potato Tubers (Solanum tuberosum L.)

The Influence of Some Reactive Oxygen Species Treatments on the Yield and Changes in the Chemical Composition of Potato Tubers (Solanum tuberosum L.)

Crop Nutrition and Soil Fertility Management in Organic Potato Production Systems

Organic farming is a comprehensive production management system that fosters and improves the health of agroecosystems, encompassing biodiversity, biological cycles, and soil biological activity. The potato (Solanum tuberosum L.) is a crucial crop in organic farming systems, standing out as one of the most highly demanded organic products on the market. Among all crops, with potatoes, there is a very large yield gap between organic and conventional systems, attributable mainly to its intensive nutrient demands. The present review, considering the most relevant scientific literature worldwide, discusses the contemporary state of knowledge on crop nutrition and soil fertility management in organic potato crop production, analyzing the effects of animal manures, green manures, organic amendments, and biostimulants on organic potato tuber yield and quality. Overall, the main findings show a particular combination is needed to effectively maintain good soil fertility, satisfy the nutritional needs of the crop, and overcome the difference in potato yield between organic and conventional farming methods while meeting consumer demand. This combination entails using an animal manure or leguminous green manure with an organic soil amendment, and even better with a biofertilizer, such as a mycorrhizae-fungus-based one. It also emerged that more targeted studies are needed to select appropriate cultivars for organic potato farming systems to optimize this environmentally friendly production method.

The Application of Paclobutrazol to GA3-Treated Seed Tuber Potato Fields Does Not Shorten the Growth Cycle or Mitigate Tuber Elongation.

Potato seed tubers are a valuable product in potato agriculture. Over the years, studies have been conducted to increase the fraction of mid-size tubers, which are used as a planting material, within the general pool of tuber sizes. Gibberellic acid has been a central component of such studies and has successfully increased the seed-size pool. However, in many cases, misshapen tubers were formed, and the practice has not become widespread. The use of the gibberellic acid inhibitor paclobutrazol has been examined for its ability to increase seed tuber number and tuber growth and to overcome the heat inhibition of tuberization in warm climates. Paclobutrazol has been shown to increase tuber yield and growth rate. In this study, we aimed to test whether the combination of gibberellic acid and paclobutrazol can increase the seed tuber pool, reduce the number of misshapen tubers, and shorten the growth cycle, thus avoiding end-of-season elevated heat conditions and reducing agricultural inputs. Our findings suggest that gibberellic acid on its own can lead to an increase in the number of seed tubers at earlier stages of growth; however, the sequential addition of paclobutrazol was not able to drive even earlier growth or lower the number of misshapen tubers.

Chlorogenic Acid Content and Metabolism-related Gene Regulation of Potato Tuber Flesh Induced by Sucrose and Phytohormones

Chlorogenic Acid Content and Metabolism-related Gene Regulation of Potato Tuber Flesh Induced by Sucrose and Phytohormones

In Vitro Assay Development to Study Pulse Field Ablation Outcome Using Solanum Tuberosum.

Exposing cells to intense and brief electric field pulses can modulate cell permeability, a phenomenon termed electroporation. When applied in medical treatments of diseases like cancer and cardiac arrhythmias, depending on level of cellular destruction, it is also referred to as irreversible electroporation (IRE) or Pulsed Field Ablation (PFA). For ablation device testing, several pulse parameters need to be characterized in a comprehensive manner to assess lesion boundary and efficacy. Overly aggressive voltages and application numbers increase animal burden. The potato tuber is a widely used initial model for the early testing of electroporation. The aim of this study is to characterize and refine bench testing for the ablation outcomes of PFA in this simplistic vegetal model. For in vitro assays, several pulse parameters like voltage, duration, and frequency were modulated to study effects not only on 2D ablation area but also 3D depth and volume. As PFA is a relatively new technology with minimal thermal effects, we also measured temperature changes before, during, and after ablation. Data from experiments were supplemented with in silico modeling to examine E-field distribution. We have estimated the irreversible electroporation threshold in Solanum Tuberosum to be at 240 V/cm. This bench testing platform can screen several pulse recipes at early stages of PFA device development in a rapid and high-throughput manner before proceeding to laborious trials for IRE medical devices.

Demographic characteristics of Paracoccus marginatus on papaya fruit and potato tubers with an innovative method for efficient application of the multinomial theorem in demographic research

Demographic characteristics of Paracoccus marginatus on papaya fruit and potato tubers with an innovative method for efficient application of the multinomial theorem in demographic research

Biological Control of Streptomyces Species Causing Common Scabs in Potato Tubers in the Yaqui Valley, Mexico

Biological Control of Streptomyces Species Causing Common Scabs in Potato Tubers in the Yaqui Valley, Mexico

Sprout Suppression of Potato (Solanum tuberosum) Tubers Using Hydrogel for Prolonged Release of Citronella Essential Oil

Sprout Suppression of Potato (Solanum tuberosum) Tubers Using Hydrogel for Prolonged Release of Citronella Essential Oil

Relationship between sprouting, glucoside alkaloids and chlorophyll production in potato tubers (Solanum tuberosum)

Consumers are troubled by whether the sprouting and greening of potato tubers accompanied with glucoside alkaloids production. To controlling the production of glucoside alkaloids and sprouting, controlled illumination and gaseous sprouting inhibitors, included citronella essential oil, methyl salicylate and ethylene, were employed, the changes in sprouting rate, chlorophyll, glucoside alkaloids and related key genes expression in biosynthesis pathways of potato tubers during storage were measured. Results showed that potatoes contained more glucoside alkaloids with high sprouting rate, whereas the greening was only affected by light, which was not a sign of glucoside alkaloid production. The sprouting rates of potato (Solanum tuberosum L. cv. Favorita) in the fumigated groups was 31.11 %-37.01 %, the glucoside alkaloids content was 83.35–90.33 mg kg−1, there was no significant difference. However, the potato sprouting rates in the CK were 100 %, and the contents of glucoside alkaloids were 153.34–161.36 mg kg−1, but the chlorophyll contents of potatoes in illumination groups were 19.27–20.51 mg kg−1, which was significantly higher (P > 0.05) than that in dark (1.46–1.85 mg kg−1). These results indicated that the synthesis of glucoside alkaloids was associated with sprouting, and it was feasible to inhibit glucoside alkaloids synthesis by gaseous sprouting suppressants.