Abstract The Foxn1 gene is required for thymic epithelial cell (TEC) development and is expressed in the thymus from the fetal to adult stages. To track Foxn1 gene expression, we inserted an IRES-lacZ gene into the 3′UTR in exon 9 of the Foxn1 gene. We found that the postnatal thymus was progressively atrophic in Foxn1Lacz/LacZ mice and displayed a gradual disorganization. The total thymocyte cell number was reduced 10%, 56% and 80% at postnatal day 8, 14, and 28. The percent of CD4 SP cells in Foxn1Lacz/LacZ mice was significant reduced, but not CD8 SP cells compared to control Foxn1+/Lacz mice. The percent of DP cell was slightly increased, and the percent of DN cell was significant increased 2 to 3 fold in day 21 to 28 mice. The percent of DN1 cells was dramatically increased to more than 60% (around 20% in control mice), and more than 80% of these cells were CD19+ cells. The percent of DN2, DN3 cells were correspondingly reduced to 15% (around 60% in control mice), and the percent of DN4 cells was also reduced in Foxn1Lacz/LacZ mice during the period. Our preliminary data suggests that the expression of MHCII on surface of TSC and Foxn1 mRNA from the Foxn1Lacz allele was reduced; furthermore, the phenotype was more severe in Foxn1Lacz/nu mice, indicating that the defects depended on the dosage of the Foxn1 gene. Taken together, our results suggest that reduction of Foxn1expression in the postnatal thymus caused defects in TEC maintenance, resulting in defects in DN1 cells and in positive selection for CD4 SP cells, which ultimately greatly reduces production of T cells in the thymus. Furthermore, the resulting thymic microenvironment is favorable for B cells development in the postnatal thymus. Supported by grant AI055001 NIH.