The design of a post-column fluorescence derivatization system utilizing microbore columns is discussed theoretically and investigated experimentally. The basic disadvantage with post-column derivatization systems is the introduction of additional band broadening that occurs in the flow-through reactor. In this paper, the band spreading in the reactor is limited by using a zig-zag open-tubular capillary, where plate height decreases with the square of the capillary diameter. It is shown that adequate mixing of two liquid streams can be achieved with a special 30-nl volume mixing chamber. Some of the reactor design parameters are, by necessity, based on the model fluorescence derivatization reaction employed; in this case, a modification of the very fast o-phthaldialdehyde reaction with primary amines is reported which incorporates the use of 3-mercaptopropionic acid. The consideration of the minimum allowable residence time and the minimum band spreading in the reactor and the mixing chamber allows calculation of the reactor geometry. Theoretical investigation of the reactor design allows prediction of the general rules for the system optimization. The application of the system to analysis of amino acids and primary aliphatic amines, which were separated on an octadecyl-silica reversed-phase column, is demonstrated. Advantages and disadvantages of the system are discussed.