Post-settlement Stages Research Articles

Early post-settlement events, rather than settlement, drive recruitment and coral recovery at Moorea, French Polynesia.

Understanding population dynamics is a long-standing objective of ecology, but the need for progress in this area has become urgent. For coral reefs, achieving this objective is impeded by a lack of information on settlement versus post-settlement events in determining recruitment and population size. Declines in coral abundance are often inferred to be associated with reduced densities of recruits, which could arise from mechanisms occurring at larval settlement, or throughout post-settlement stages. This study uses annual measurements from 2008 to 2021 of coral cover, the density of coral settlers (S), the density of small corals (SC), and environmental conditions, to evaluate the roles of settlement versus post-settlement events in determining rates of coral recruitment and changes in coral cover at Moorea, French Polynesia. Coral cover, S, SC, and the SC:S ratio (a proxy for post-settlement success), and environmental conditions, were used in generalized additive models (GAMs) to show that: (a) coral cover was more strongly related to SC and SC:S than S, and (b) SC:S was highest when preceded by cool seawater, low concentrations of Chlorophyll a, and low flow speeds, and S showed evidence of declining with elevated temperature. Together, these results suggest that changes in coral cover in Moorea are more strongly influenced by post-settlement events than settlement. The key to understanding coral community resilience may lie in elucidating the factors attenuating the bottleneck between settlers and small corals.

Effects of Water Temperature and Structural Habitat Complexity on the Routine Swimming Speed and Escape Response of Post-Settlement Stage White Seabream

Coastal habitats are increasingly threatened by multiple anthropogenic-related activities, which include ocean warming and loss of structural habitat complexity. These two pressures have the potential to severely affect the structure and function of marine biodiversity. Early life stages of many fish species recruit to coastal habitats at the end of their pelagic phase, benefiting from access to food, shelter and protection. However, changes in temperature have been shown to influence ecologically relevant behaviours in post-settlement stage fish, and the loss of structural habitat complexity has been related to low recruitment and deleterious behaviours of fish in coastal habitats. Here, we evaluated the individual and interactive effects of prolonged exposure to increasing temperature and changed structural habitat complexity on routine swimming speed and escape response of post-settlement white seabream, Diplodus sargus (Linnaeus, 1758). Fish were reared under different temperatures (control 19 °C; high 22 °C) and structural habitat complexity (low and high) scenarios, in a cross-experimental design, and the routine swimming and escape responses were analyzed after 6 weeks of exposure. Change in temperature did not induce alterations at the behavioural level, but loss of structural habitat complexity increased speed and distance travelled during routine swimming, and responsiveness to a stimulus during the escape response behaviour. The interaction of the two factors did not influence performance. Determining how species are affected by changes in their environment, and the mechanisms that underlie these changes, will be critical to understanding the fish recruitment and populations’ fitness and survival.

Adaptive effects of parental and developmental environments on offspring survival, growth and phenotype

Abstract Phenotypic adjustments to environmental variation are particularly relevant to cope with putative environmental mismatches often imposed by natal dispersal. We used an intergenerational cross‐transplant field‐based experiment to evaluate the morphological and physiological effects of parental and postsettlement water flow environments on the orange‐fin anemonefish Amphiprion chrysopterus through ontogeny (at pre‐ and postsettlement stages). Offspring born from parents under high water flow had an 18% higher caudal fin aspect ratio (a compound measure of shape) at the presettlement stage, 10% slower growth after settlement, and 55% lower survival after settlement compared to offspring from low water flow parents. At the presettlement stage, caudal fin length was determined by parental caudal fin length. At the postsettlement stage, fish survived equally well with similar phenotypes in both high and low developmental flow environments. However, results suggest potential developmental phenotypic plasticity in caudal fin length, which increases more under low water flow during development. After settlement, growth was the only morphological or physiological trait that was associated with parental water flow, which was lower from parents under high flow, as was survival. These results give important insights into the parental contribution, both genetic and nongenetic, in determining early offspring phenotype and subsequent growth and survival. Our results also suggest that offspring may possess flexibility to cope with a wide range of local environments including those different from their parents. Overall, the findings of this study show the fitness consequences of living in different environments and the likely trade‐offs between parental and offspring fitness in a wild population. Read the free Plain Language Summary for this article on the Journal blog.

Predators and habitat association of post-settlement snapper (Chrysophrys auratus).

Structured habitats play an important nursery role during the crucial early juvenile or post-settlement stages of many fish species. Predominantly, the utility of structured habitats to juvenile fish is thought to be associated with the provisioning of food or as a refuge from predation. Although snapper (Chrysophrys auratus) in New Zealand also have a strong affinity for structured habitats during their post-settlement phase, their predators are unknown as is the role of predation in determining habitat association. Here the authors investigated potential predators of post-settlement snapper by remotely observing interactions of restrained post-settlement snapper with potential predators and investigating the diet of potential predators. They also conducted tank experiments with a potential predator, both with and without the presence of structure. Restrained snapper were infrequently approached by predators, but two new nocturnal predators were identified. No snapper were observed in the diet of potential predators, although two piscivores were identified as potential candidates. No predation occurred during tank experiments, but there was a non-significant indication that under threat of predation post-settlement snapper may use habitat when it is present and aggregate together when it is not. The findings suggest that the pulsed nature of predation may have made it difficult to observe given the methods employed and that the threat of predation may be sufficient to drive the habitat selection of post-settlement snapper. Investigating the significance of predation via methods that do not require direct observations may therefore be more appropriate given this context.

Response of Microbial Communities on Culturing Plates of Post-settlement Sea Cucumbers to Seawater Acidification and Warming

Seawater acidification and warming have been found to affect the early life of many marine organisms, but their effects on the microbial community in the environment related to the early development stage of aquaculture species have been rarely investigated. To understand how seawater acidification and warming impact the microbial community in aquaculture systems, we designed four microcosms to monitor and characterize the microbial composition on the corrugated plates in the Apostichopus japonicus culture tanks during its post-settlement stage. High-throughput 16S rRNA sequencing revealed that the bacterial community composition varied significantly in different periods of incubation. The bacterial diversity and community composition were obviously changed by seawater acidification and warming in the early period and then tended to revert to the level of the control group. Acidification significantly increased the relative abundance of dominant families Rhodobacteraceae and Flavobacteriaceae in the early period, suggesting that microbiota could increase the abundance of predominant taxa to adapt to increased CO2 concentration and reconstruct a stable community structure. No interaction effect of both factors was observed in the combined group. Results reveal that the microbial communities on the corrugated plates in A. japonicus culture tank were affected in the early period of incubation, and could then acclimatize to the increased CO2 and temperature. This study provides new insights into the variation and adaptation responses of the microbiota in aquaculture systems to seawater acidification and warming.

Predominant factors limiting the recovery of the eastern oyster (Crassostrea virginica) in western Mississippi Sound, USA

In addition to suitable substrate, successful oyster recruitment requires an adequate supply of planktonic larvae, followed by the subsequent survival and growth of early post-settlement stages. Substrate limitation, recruitment limitation and post-settlement limitation each played key roles in limiting the recovery of the eastern oyster, Crassostrea virginica (Gmelin 1791) within western Mississippi Sound between 2016 and 2019. Effects of a mortality event which eliminated the oyster spawning stock biomass from two major oyster reefs of western Mississippi Sound in 2016 carried over to the 2018 recruitment period. But the supply of larvae from outside the affected reefs was sufficient to provision spat to restored and reference sites within the 2018 study area. Thus, substrate limitation was inferred to be the primary limitation to early oyster recruitment in 2018. Moreover, variability in spat metrics from settlement samples implied potential post-settlement limitation in 2018. Spat density, mortality, size, and inferred growth varied on temporal, subregional, and microhabitat scales. In 2019, oyster spawning stocks were completely decimated throughout the western Mississippi Sound region by unprecedented freshwater discharge from the Bonnet Carré spillway. Consequently, early oyster recruitment was effectively eliminated, as evidenced by the lack of spat settlement across the entire oyster metapopulation of western Mississippi Sound. Within the course of a single year, the predominant deterrent to oyster recovery had shifted from substrate limitation to recruitment limitation.

Benthic micro- and macro-community succession and coral recruitment under overfishing and nutrient enrichment.

Herbivory and nutrient availability are fundamental drivers of benthic community succession in shallow marine systems, including coral reefs. Despite the importance of early community succession for coral recruitment and recovery, studies characterizing the impact of top-down and bottom-up drivers on micro- and macrobenthic communities at scales relevant to coral recruitment are lacking. Here, a combination of tank and field experiments were used to assess the effects of herbivore exclusion and nutrient enrichment on micro- to macrobenthic community succession and subsequent coral recruitment success. Herbivore exclusion had the strongest effect on micro- and macrobenthic community succession, including a community shift toward copiotrophic and potentially opportunistic/pathogenic microorganisms, an increased cover of turf and macroalgae, and decreased cover of crustose coralline algae. Yet, when corals settled prior to the development of a macrobenthic community, rates of post-settlement survival increased when herbivores were excluded, benefiting from the predation refugia provided by cages during their vulnerable early post-settlement stage. Interestingly, survival on open tiles was negatively correlated with the relative abundance of the bacterial order Rhodobacterales, an opportunistic microbial group previously associated with stressed and diseased corals. Development of micro- and macrobenthic communities in the absence of herbivory, however, led to reduced coral settlement. In turn, there were no differences in post-settlement survival between open and caged treatments for corals settled on tiles with established benthic communities. As a result, open tiles experienced marginally higher recruitment rates, driven primarily by the higher initial number of settlers on open tiles compared to caged tiles. Overall, we reveal that the primary interaction driving coral recruitment is the positive effect of herbivory in creating crustose coralline algae (CCA)-dominated habitats, free of fleshy algae and associated opportunistic microbes, to enhance coral settlement. The negative direct and indirect impact of fish predation on newly settled corals was outweighed by the positive effect of herbivory on the initial rate of coral settlement. In turn, the addition of nutrients further altered benthic community succession in the absence of herbivory, reducing coral post-settlement survival. However, the overall impact of nutrients on coral recruitment dynamics was minor relative to herbivory.

Contrasting effects of crustose coralline algae from exposed and subcryptic habitats on coral recruits

Coral recruitment is important in sustaining coral reef ecosystems and contributing to their recovery after disturbances. Despite widespread acceptance that crustose coralline algae (CCA) positively influence coral recruitment success, especially by enhancing coral settlement and early post-settlement stages, there are no experimental data on the effects of CCA species on late post-settlement survival and growth of corals. This study tested the impact of four common, thick-crusted CCA species from two habitats (exposed and subcryptic) on the survival and growth of two recruit size categories of the coral genus Pocillopora. Coral recruits and CCA were transplanted adjacent to each other using epoxy in Petri dishes directly attached to the reef substratum on the forereef of Moorea (French Polynesia) in a 1-year field experiment. In the subcryptic habitat, survival of small-sized recruits adjacent to subcryptic CCA (0–5%) was lower than adjacent to dead CCA (35%), while in the exposed habitat, survival of small-sized recruits adjacent to exposed CCA (20–25%) was higher than adjacent to dead CCA (5%). None of the CCA species affected the survival of large-sized recruits within exposed or subcryptic habitats. However, the growth of large-sized recruits adjacent to subcryptic CCA was lower than adjacent to dead CCA. Recruits adjacent to exposed CCA died less from competition with turf algae relative to dead CCA, while recruits adjacent to subcryptic CCA frequently died from overgrowth by CCA. These results suggest that, in subcryptic habitats, CCA can reduce the survival and/or growth of coral recruits via direct competitive overgrowth, while in exposed habitats, they can enhance coral recruit survival by alleviating competition with turf algae. Importantly, our study demonstrates that not all CCA species are beneficial to the survival and growth of coral recruits and that there is considerable variability in both the outcome and process of competition between CCA and corals.

Handling Sexual Harassment Complaints in Sri Lanka: Fair Process and Best Practices

Sexual harassment at the workplace continues to be an issue all over the world. While there are many policies with well laid-out procedures specifying the process to follow when complaints of sexual harassment are received, there is still a lack of knowledge on actual practices of handling sexual harassment complaints and best practices. Data were collected from 35 HR professionals (HRPs) from over 30 companies in Sri Lanka on how sexual harassment complaints were handled. Based on this empirical evidence and literature as well as the theory of organisational justice, a six-stage process that HRPs should follow for a fair, just and effective handling of sexual harassment complaints is proposed. The process comprises of (a) complaint stage, (b) assessment of complaint stage, (c) investigation stage, (d) action stage, (e) appeal stage and (f) post-settlement stage. Best practices of handling sexual harassment complaints identified through the empirical data and literature are also highlighted.

Culture of the tropical brown seaweed Sargassum aquifolium: From hatchery to field out-planting

As part of the preparation for the mass cultivation of the brown seaweed, Sargassum aquifolium, the following were investigated in a replicated experiment: patterns on the early post-settlement stage of the germlings on three types of artificial substrates (i.e., clay, limestone, and nylon string), and growth and development of the hatchery-derived S. aquifolium juveniles out-planted in the sea. Our investigation during the early post-settlement stage demonstrated: 1) recruit density to be highest on nylon string followed by clay, then limestone throughout a one-week observation period, 2) survival rate of germlings to be highest on limestone, followed by clay, then nylon string at day 9, and 3) higher daily growth rate (DGR) of germlings on clay at day 14, 21, 35, and 49. Recruits on clay substrates were the first to reach young juvenile stage and were used in out-planting. Young juveniles demonstrated continuous increase in length until 42 days post out-planting with some fluctuations thereafter. Lateral branches started to decrease 7 days post out-planting and throughout the sampling days. Overall, clay substrate was found to be suitable for the attachment and cultivation of S. aquifolium. However, an optimal density and optimal site selection seemed to be required during hatchery cultivation and out-planting, respectively. This would also prevent infestation of epiphytic organisms and grazers, and accumulation of sediment which could hamper the growth and development of S. aquifolium.

Benthic Structure and Pelagic Food Sources Determine Post-settlement Snapper (Chrysophrys auratus) Abundance

Nursery habitats provide increased survival and growth and are a crucial early life-stage component for many fish and invertebrate populations. The biogenic structures that provide this nursery function, however, are increasingly degraded. Therefore, any effort to conserve, restore or replace habitat with artificial structure should be guided by an understanding of the value provided by that nursery habitat. Here we experimentally manipulated structure across a number of sites by inserting pinnind bivalve mimics into the seabed and deploying video cameras to observe the response of post–settlement stage snapper, Chrysophrys auratus (Forster in Bloch and Schneider 1801). We also collected a range of environmental variables across these sites to determine the relative importance to snapper of benthic vs. pelagic productivity. While the abundance of snapper was low, our results demonstrated a strong association to structure relative to control plots. The environmental variable with the highest correlation to snapper abundance was the abundance of zooplankton eaten by snapper. This result was well supported by the dominance of zooplankton over small benthic invertebrates in snapper gut contents, and the weak influence of benthic infauna in our regression models. These regressions also demonstrated that when combined with zooplankton abundance, turbidity had a negative relationship to snapper abundance. This highlights the importance of relatively clear water in estuaries, which allows post–settlement snapper to more efficiently consume the zooplankton that are present in the water column. The third component that post–settlement snapper require is of course the presence of benthic structure. While benthic habitat structure was the strongest factor affecting juvenile snapper abundance, we did not find any correlations to suggest that this importance was related to energetic sheltering and access to locations with high food flux.

Patterns of selective predation change with ontogeny but not density in a marine fish.

Phenotypic variation is prevalent in the early life-history stages of many organisms and provides the basis for selective mortality on size and growth-related traits of older life stages. Densities of organisms can vary widely at important life-history transitions, raising additional questions about the interplay between selection and density-dependent processes. We evaluate density dependence in patterns of selective mortality for a temperate reef fish. Specifically, we exposed pre-settlement and post-settlement stages of the common triplefin (Forsterygion lapillum) to a natural predator and evaluated patterns of selective mortality on early life-history traits as a function of ontogenetic stage and density. We used otoliths to reconstruct the traits of fish that survived versus fish that were consumed (i.e., we recovered otoliths from the guts of predators), and we estimated selection by analysing the relationship between absolute fitness and standardised traits. Absolute fitness was negatively correlated with size and larval growth rate for pre-settlement fish (i.e., larger and faster growing individuals were more likely to be consumed by predators), and this was consistent across the range of densities evaluated. Post-settlement fish experienced no selective mortality. Additionally, absolute fitness was equal across density treatments, suggesting mortality was density-independent. Collectively, these results suggest that patterns of selection change with ontogeny, but may be stable across densities when mortality is density-independent. Shifts in selective mortality for species with distinct life-stages can mask and complicate relationships between traits and fitness, and the importance of such traits may be underappreciated for earlier life stages.

Morphometric relationships and seasonal variation in size, weight, and a condition index of post-settlement stages of the Caribbean spiny lobster.

Spiny lobsters have a protracted pelagic, oceanic larval phase. The final larval stage metamorphoses into a non-feeding postlarva (puerulus) that actively swims towards the coast to settle in shallow habitats and does not resume feeding until after the molt into the first-stage juvenile. Therefore, the body dimensions and nutritional condition of both settled pueruli and first juveniles are likely to vary over time, potentially playing a crucial role in the recruitment to the benthic population. We compared carapace length (CL), height (CH), and width (CW); total length (TL), and body weight (W) between pueruli and first juveniles of the Caribbean spiny lobster, Panulirus argus, as well as morphometric relationships between both developmental stages. Except for CL, all other dimensions were larger in first juveniles, but more markedly CH and W. The slopes of the CH vs CL, CW vs CL, and W vs CL regressions differed significantly between stages, and all log-transformed relationships showed isometry in both stages, except for the CH vs CL relationship, which showed positive allometry. These results reflect a morphological change from the flatter, more streamlined body of the puerulus, to the heavier, more cylindrical body of the juvenile. We also analyzed seasonal variations in CL, W, the W/CL index (a morphometric condition index), and a modified W/CL index (i.e. after controlling for a significant effect of CL) of both stages using individuals monthly collected over 12 consecutive seasons (Autumn 2010–Summer 2013). In both stages, all three variables exhibited significant seasonal variation. For pueruli, the modified W/CL index differed from average in only two seasons, winter 2011 (higher) and summer 2013 (lower), but showed great within-season variation (larger coefficients of variation, CV), potentially reflecting variability in nutritional condition of larvae prior to metamorphosis and in the distances swum by individual pueruli to the settlement habitats. For first juveniles, the modified W/CL index was higher than average in winter and spring 2011, and lower in autumn 2011 and winter 2012, but showed less within season variation (smaller CVs), suggesting a combination of carry-over effects of puerulus condition and effects of local conditions (e.g., food availability and predation risk). These findings warrant further investigation into factors potentially decoupling settlement from recruitment processes.

Dynamic habitat use of an estuarine nursery seascape: Ontogenetic shifts in habitat suitability of the European flounder (Platichthys flesus)

Estuaries have long been recognized as nursery habitats for various marine fish species. As seascapes consisting of a mosaic of habitat patches, estuarine nurseries incorporate ecological processes such as ontogenetic shifts. To improve our understanding of the habitat requirement changes of nursery species within the estuarine seascape, habitat suitability models were built using boosted regression trees for three size classes of European flounder (Platichthys flesus) juveniles. The models combined several dynamic and static predictors, from physical and chemical water parameters to biological and physical habitat variables. The relationships between juveniles and predictor variables varied with size, potentially indicating the dynamics of habitat use for the juvenile flounder inside the estuarine nursery. Younger post-settled juveniles tended to be spatially constrained to a shallow upstream area and, with size, there were ontogenetic shifts to the middle estuary. This demonstrates the importance of considering different life stages when developing essential fish habitat maps, which reflect fine scale temporal and spatial distributions. Given the high level of anthropogenic pressures to which estuaries are subjected, the consideration of fish ontogenetic habitat requirements within the estuarine nursery is needed to identify high-value areas, and is valuable for developing effective spatial and temporal management plans. These are essential to fully protect the most sensitive life stages, such as early post-settlement stages occupying transient habitats. Additionally, and as the juvenile-habitat associations can rapidly change, fine-scale connectivity in the estuarine nursery becomes even more relevant in determining recruitment. Connectivity should therefore be central in conservation planning, in order to sustain estuarine and marine adult populations, and ultimately maintaining the fisheries.

Effects of in situ CO2 enrichment on epibiont settlement on artificial substrata within a Posidonia oceanica meadow

Alterations to colonization or early post-settlement stages may cause the reorganization of communities under future ocean acidification conditions. Yet, this hypothesis has been little tested by in situ pH manipulation. A Free Ocean Carbon Dioxide Enrichment (FOCE) system was used to lower pH by a ~0.3unit offset within a partially enclosed portion (1.7m3) of a Posidonia oceanica seagrass meadow (11m depth) between 21 June and 3 November 2014. Epibiont colonization and early post settlement stages were assessed within the FOCE setup, as part of the larger community-level study, to better understand the outcome for a multispecies assemblage and the ecological processes that result in reported community shifts under altered carbonate chemistry. Two types of artificial collectors (tiles and scourers) were placed within three treatments: a pH-manipulated enclosure, an un-manipulated control enclosure, and an open plot in the ambient meadow. Tiles and scourers were collected after one to four months. Additionally, to see whether the outcome differed for communities in a later successional stage, previously settled scourer-collectors were also placed in the same three treatments. Enclosures acted to reduce settlement and migrant colonization. Scourers deployed for one to four months within the open-plot contained a community assemblage that could be distinguished from the assemblages within the enclosures. However, a comparison of enclosure assemblages on tiles showed evidence of a pH effect. There was lowered coverage of crustose coralline algae and fewer calcareous tube-forming polychaetes (Spirorbis sp. and Spirobranchus sp.) on tiles placed in the pH-manipulated enclosure compared to the un-manipulated enclosure. For assemblages in scourer collectors, shared and common taxa, in all treatments, were invertebrate polychaetes Psamathe fusca, Sphaerosyllis sp., Chrysopetalum sp., arthropods Harpacticoida, and Amphipoda, and the juvenile bivalve Lyonsia sp. Similar organism composition and abundance, as well as taxonomic richness and evenness, were found in scourers from both enclosures. Pre-settled scourers contained greater numbers of individuals and more calcified members, but the assemblage, as well as the growth rate of a juvenile bivalve Lyonsia sp., appeared unaffected by a two-month exposure to lowered pH and calcium carbonate saturation state. Results from this case study support the hypothesis that early stages of specific calcifiers (crustose coralline algae and calcareous tube-forming polychaetes) are sensitive to near future ocean acidification conditions yet suggest that negative effects on sessile micro-invertebrate assemblages will be minimal.

A novel assessment of the traction forces upon settlement of two typical marine fouling invertebrates using PDMS micropost arrays.

ABSTRACTMarine biofouling poses a severe threat to maritime and aquaculture industries. To prevent the attachment of marine biofouling organisms on man-made structures, countless cost and effort was spent annually. In particular, most attention has been paid on the development of efficient and environmentally friendly fouling-resistant coatings, as well as larval settlement mechanism of several major biofouling invertebrates. In this study, polydimethylsiloxane (PDMS) micropost arrays were utilized as the settlement substrata and opposite tractions were identified during early settlement of the barnacle Amphibalanus amphitrite and the bryozoan Bugula neritina. The settling A. amphitrite pushed the periphery microposts with an average traction force of 376.2 nN, while settling B. neritina pulled the periphery microposts with an average traction force of 205.9 nN. These micropost displacements are consistent with the body expansion of A. amphitrite during early post-settlement metamorphosis stage and elevation of wall epithelium of B. neritina during early pre-ancestrula stage, respectively. As such, the usage of micropost array may supplement the traditional histological approach to indicate the early settlement stages or even the initiation of larval settlement of marine fouling organisms, and could finally aid in the development of automatic monitoring platform for the real-time analysis on this complex biological process.

Whole gut microbiome composition of damselfish and cardinalfish before and after reef settlement.

The Pomacentridae (damselfish) and Apogonidae (cardinalfish) are among the most common fish families on coral reefs and in the aquarium trade. Members of both families undergo a pelagic larvae phase prior to settlement on the reef, where adults play key roles in benthic habitat structuring and trophic interactions. Fish-associated microbial communities (microbiomes) significantly influence fish health and ecology, yet little is known of how microbiomes change with life stage. We quantified the taxonomic (16S rRNA gene) composition of whole gut microbiomes from ten species of damselfish and two species of cardinalfish from Lizard Island, Australia, focusing specifically on comparisons between pelagic larvae prior to settlement on the reef versus post-settlement juvenile and adult individuals. On average, microbiome phylogenetic diversity increased from pre- to post-settlement, and was unrelated to the microbial composition in the surrounding water column. However, this trend varied among species, suggesting stochasticity in fish microbiome assembly. Pre-settlement fish were enriched with bacteria of the Endozoicomonaceae, Shewanellaceae, and Fusobacteriaceae, whereas settled fish harbored higher abundances of Vibrionaceae and Pasteurellaceae. Several individual operational taxonomic units, including ones related to Vibrio harveyi, Shewanella sp., and uncultured Endozoicomonas bacteria, were shared between both pre and post-settlement stages and may be of central importance in the intestinal niche across development. Richness of the core microbiome shared among pre-settlement fish was comparable to that of settled individuals, suggesting that changes in diversity with adulthood are due to the acquisition or loss of host-specific microbes. These results identify a key transition in microbiome structure across host life stage, suggesting changes in the functional contribution of microbiomes over development in two ecologically dominant reef fish families.

Sex-specific mortality costs of dispersal during the post-settlement stage promote male philopatry in a resident passerine

The costs and benefits of dispersal that select for sex-biased dispersal are still poorly understood. Many studies examine fitness consequences of dispersal after first breeding, while dispersal costs are most likely paid before first breeding during the movement, settlement, and post-settlement stages. We studied survival correlates of dispersal between flock settlement and first breeding during the first winter of juvenile willow tits (Poecile montanus), a small passerine that has female-biased natal dispersal, but shows no dispersal-associated survival differences after first breeding. This resident food-hoarding species winters in small stable non-kin territorial flocks. We collected capture-recapture data by following flocks from autumn to the following spring. We compared monthly survival and return rates of juveniles that were born and recruited within the study area (philopatric juveniles) and juveniles that originated from outside the study area (immigrant juveniles). Among males, survival was highest for philopatric juveniles whereas survival of females was higher among immigrant juveniles, providing one explanation for the female-biased natal dispersal observed in the species. Philopatric males may benefit from prior residency either through increased site familiarity and knowledge of winter food resources and/or by gaining higher social ranks during flock establishment. However, rank data provided little support for the latter hypothesis. Other mechanisms such as increased ability to find high-quality flocks and mates may be important for female survival. Our results provide further evidence that dispersal costs are paid mainly before first breeding and that sex-specific costs of dispersal play a role in the evolution of sex-biased dispersal. This paper shows that female-biased dispersal can be a consequence of sex-specific costs and benefits of dispersal during the post-settlement stage of the dispersal process which is a very poorly understood stage in dispersal theory. By examining correlates of dispersal before rather than after first breeding as it is usually done, our study aids in understanding the selection pressures modifying dispersal strategies. Our results have wide applicability because there are many resident taxa similar to the willow tit (our study species) that have a settlement stage and a prolonged non-reproductive phase before their first reproduction.

Auditory evoked potential audiograms in post-settlement stage individuals of coral reef fishes

Just after the reef colonization, fish species could use the acoustic cue to settle on different suitable habitats. In the present study, we used the auditory evoked potential (AEP) technique to measure and compare the detection abilities in five coral reef fish species, with some of these species that are found in the same habitat. We also examined the effect of fish size on sensitivity at the species level. All studied species except one showed size-related changes in sensitivity characterized by either a decrease (i.e. higher AEP thresholds) or an increase (i.e. lower AEP thresholds) in detection abilities with increasing size. The interspecific comparison of audiograms revealed that some species are more sensitive than others in terms of sound pressure level and frequency detection.Overall, this study indicates that the AEP threshold and the frequency bandwidth at early life stages may vary between and within fish species. The detection abilities are different in fish species that are not phylogenetically related, which might suggest that the establishment of their capabilities is not necessarily related to the reef conquest.

Stepwise Evolution of Coral Biomineralization Revealed with Genome-Wide Proteomics and Transcriptomics.

Despite the importance of stony corals in many research fields related to global issues, such as marine ecology, climate change, paleoclimatogy, and metazoan evolution, very little is known about the evolutionary origin of coral skeleton formation. In order to investigate the evolution of coral biomineralization, we have identified skeletal organic matrix proteins (SOMPs) in the skeletal proteome of the scleractinian coral, Acropora digitifera, for which large genomic and transcriptomic datasets are available. Scrupulous gene annotation was conducted based on comparisons of functional domain structures among metazoans. We found that SOMPs include not only coral-specific proteins, but also protein families that are widely conserved among cnidarians and other metazoans. We also identified several conserved transmembrane proteins in the skeletal proteome. Gene expression analysis revealed that expression of these conserved genes continues throughout development. Therefore, these genes are involved not only skeleton formation, but also in basic cellular functions, such as cell-cell interaction and signaling. On the other hand, genes encoding coral-specific proteins, including extracellular matrix domain-containing proteins, galaxins, and acidic proteins, were prominently expressed in post-settlement stages, indicating their role in skeleton formation. Taken together, the process of coral skeleton formation is hypothesized as: 1) formation of initial extracellular matrix between epithelial cells and substrate, employing pre-existing transmembrane proteins; 2) additional extracellular matrix formation using novel proteins that have emerged by domain shuffling and rapid molecular evolution and; 3) calcification controlled by coral-specific SOMPs.