Water contamination poses an important challenge to aquatic fauna, including well-documented effects on amphibian larvae. However, little is known about how contamination during the larval stages may affect post-metamorphic phases, or whether resistance may have evolved in some populations. In this work, we tested the hypothesis that chronic exposure to ammonium (a common contaminant in agroecosystems with confirmed effects on anuran tadpoles) during the larval stage of Pelophylax perezi frogs would affect growth and locomotor performance of metamorph, juvenile, subadult and adult stages. We also predicted that the effects of ammonium would be milder in offspring originated from parental agroecosystem frogs than those originating from forests. We compared tadpoles from both habitats either reared in untreated water or chronically exposed to ammonium. We found that exposure to ammonium during the larval stage inflicted effects on morphology (different measures of body size) and swimming speed after metamorphosis until adulthood. However, these effects were not always consistent through post-metamorphic stages and the effects differed as a function of treatment and habitat. In adults, body size and condition were greater in non-ammonium and ammonium exposed individuals, respectively. These differences were not detectable in metamorphs, for which only ammonium-exposed individuals from agroecosystem showed reduced body size in intermediate post-metamorphic stages. In turn, treatment reduced jumping distance only in agroecosystem adults, subadults and juveniles, which was opposite to the trend observed just after metamorphosis. These changes of patterns throughout the ontogeny of P. perezi could be due to processes such as compensatory growth, delayed energy costs derived from it, or early sexual differences that could be present even before they can be accounted for. In summary, this study suggests that exposure to ammonium during larval stages can result in diverse biological and long-term outcomes in later life stages.