In this article, the geometric adaptive robust hierarchical control strategy is proposed for underactuated quadrotor, in which the negative effects of nonlinearities, uncertainties, and coupling are thoroughly considered and effectively attenuated. For handling nonlinearities, geometric control is adopted, i.e., the attitude error is directly defined on tangent space of rotation group, thus better attitude tracking performance can be achieved. To deal with uncertainties, a comprehensive dynamic model is established with compound damping terms representing the main aerodynamic effects and all inertia parameters including mass, inertia tensor, and center of gravity. Then, integrated direct/indirect adaptive robust control is developed with adaptive compensation of aerodynamic damping and complete inertia, which is beneficial to improve tracking performance. As for the coupling, hierarchical control architecture is utilized to relax the strong coupling between attitude and translational subsystems. Moreover, the stability of the overall closed-loop hierarchical system, together with transient performance and final tracking accuracy, has been rigorously analyzed without time-scale separation assumption. Finally, comparative experiments demonstrate the better performance of the proposed method in terms of tracking accuracy and robustness.