The development of photoacoustic systems is important for the real-time detection of cysteine (Cys), a biothiol in biological systems that serves as a significant biomarker for human health. Advanced photoacoustic (PA) signals with colloidal plasmonic Au nanomaterials rely on the efficient conversion of light to energy waves under moderately pulsed laser irradiation. In this study, we synthesized Cys-capped Au nanorods (Au@Cys NRs) and Cys-capped Au nanoparticles (Au@Cys NPs) through a conjugate of three Cys concentrations (10, 100, and 1000 μM). These plasmonic Au nanomaterials can be used as a PA resonance reagent due to their maximum localized surface plasmon resonance (LSPR) absorption bands at 650 nm and 520 nm in Au NRs and Au NPs, respectively. Subsequently, the PA signals were noticeably increased proportionally to the concentrations in the Au@Cys NRs and Au@Cys NPs under 658 nm and 520 nm laser irradiation, respectively, according to our portable photoacoustic system. Furthermore, PA signal amplitudes in Cys detection are boosted by ~233.01% with Au@Cys NRs and ~102.84% with Au@Cys NPs enhancement, compared to free Cys, according to ultrasound transducers at frequencies of 3 MHz.