Water inflow into a tunnel subject to fault zones and fault effective zones is interpreted in this study using a three-district zoning method. An improved Brinkman model is proposed to investigate the seepage law of the geological defects of a fault. A coupled calculation model of typical Darcy seepage and Brinkman rapid seepage is constructed to establish a mathematical model of nonlinear seepage flow based on three-district zoning and the corresponding numerical implementation. In addition, the influence of the angle between the fault dip and tunneling directions on the water inrush in a tunnel is also studied. The variation characteristics of the pore pressure and velocity fields under various construction stages are analyzed, as is the seepage velocity of pore water at the tunnel heading. Moreover, the effects of the fault dip direction on the seepage field and water inflow are discussed. The following results were obtained. (1) Before excavation to the fault effective zone, the pore pressure at the same depth remained essentially unchanged in front of the tunnel heading. After excavation to the fault effective zone, the pore pressure at the same depth increases linearly with distance in front of the tunnel heading. (2) The seepage velocity changed gently before excavation to the fault effective zone but showed wavy fluctuating after excavation to the fault effective zone. The velocity reached its maximum value in the fault zone before decreasing rapidly and remaining close to zero in the general surrounding rock zones. (3) As the excavation length increased, the water inflow increased gradually, reaching its maximum value in the fault zone. (4) In the fault zone, the seepage velocity decreased with an increase in the fault dip. The water inflow reached maximum and minimum values at angles of 90° and 150°, respectively.