Marine shales serve as the primary source of shale gas in China, having attained industrial development, whereas transitional shales constitute a significant focus for ongoing exploration and exploitation. Understanding the pore-fracture structures in marine and transitional shales is strategic importance for the advancement of shale gas and oil resources in China. This study focuses on marine and transitional shales, using core samples for physical simulations to classify pore-fracture structures and reveal their impact on fracturing fractures propagation. The pore-fracture structures in shale are categorized into three primary types: pore-pore, pore-fracture, and fracture-fracture structures, with further subdivision into 12 subtypes based on the spatial distribution and types of pores and fractures. The genesis types of pore-fracture structures in different depositional facies were revealed, and characteristic models for the development of pore-fracture structure development were established. In marine shales, dense pore, pores-within-pores and interconnected pore structures are primarily controlled by organic hydrocarbon generation, as well as interconnected fracture structures formed under depositional and stresses. Interconnected fracture structures, being advantageous, are the primary targets for enhancing fracture connectivity and extension. Meanwhile, fracturing fractures preferentially connect with interconnected fracture structures developed between minerals, followed by those between clay and mineral particles. The influence of trending fracture structures on fracturing fractures is location-dependent; structures developed between skeleton mineral particles facilitate fracturing fractures propagation, while the ends of trending fracture structures retain energy, promoting spontaneous connection with surrounding pore-fracture structures, resulting in secondary fractures and aiding in multi-directional fracture propagation, enhancing the effectiveness of fracturing treatments and providing valuable theoretical support for their design.