Ammonia-oxidizing Bacteria Population Size Research Articles

The variation of nitrifying bacterial population sizes in a sequencing batch reactor (SBR) treating low, mid, high concentrated synthetic wastewater

The purpose of this study was to correlate the population size of ammonia-oxidizing bacteria (AOB) and nitrite oxidizing bacteria (NOB) with nitrification performance under various operational conditions (chemical oxygen demand (COD) concentration, dissolved oxygen (DO), and hydraulic retention time (HRT)) and influent allylthiourea (ATU) shock. The AOB (genera Nitrosomonas and Nitrosospira ) and NOB (genera Nitrobacter and Nitrospira ) communities were analyzed using fluorescent in situ hybridization (FISH). Ammonia-oxidizing bacteria and NOB accounted for 6.2 ± 0.9% and 2.5 ± 0.3% in total biomass, respectively. The population sizes of AOB and NOB varied with different levels of COD, DO, and HRT. Nitrosomonas and Nitrospira were dominant under conditions favorable for nitrification, while Nitrosospira outcompeted Nitrosomonas under adverse conditions (low [NH4+], low DO, short HRT, and ATU shock), and Nitrobacter outcompeted Nitrospira at high substrate concentrations (COD and [NH4+]). Under ATU shock that inhibited the oxidation of NH4+ to NO2–, AOB population was substantially reduced with the stepwise increase of ATU dosage, and led to a corresponding decrease of NOB population. There was a discrepancy between nitrifying bacterial populations and their functions. Although AOB outnumbered NOB in all tests and became more dominant at low DO and short HRT, NH4+ oxidation, instead of NO2– oxidation, was the rate-limiting reaction for nitrification and susceptible to the adverse conditions. The study demonstrated the importance of elucidating the shifts of nitrifying bacterial population to optimize process design and operation at different influent characteristics, aeration intensity, retention time, and potential influent toxic shock.

Quantitative analyses of the abundance and composition of ammonia‐oxidizing bacteria and ammonia‐oxidizing archaea of a Chinese upland red soil under long‐term fertilization practices

The abundance and composition of soil ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) were investigated by using quantitative real-time polymerase chain reaction, cloning and sequencing approaches based on amoA genes. The soil, classified as agri-udic ferrosols with pH (H(2)O) ranging from 3.7 to 6.0, was sampled in summer and winter from long-term field experimental plots which had received 16 years continuous fertilization treatments, including fallow (CK0), control without fertilizers (CK) and those with combinations of fertilizer nitrogen (N), phosphorus (P) and potassium (K): N, NP, NK, PK, NPK and NPK plus organic manure (OM). Population sizes of AOB and AOA changed greatly in response to the different fertilization treatments. The NPK + OM treatment had the highest copy numbers of AOB and AOA amoA genes among the treatments that received mineral fertilizers, whereas the lowest copy numbers were recorded in the N treatment. Ammonia-oxidizing archaea were more abundant than AOB in all the corresponding treatments, with AOA to AOB ratios ranging from 1.02 to 12.36. Significant positive correlations were observed among the population sizes of AOB and AOA, soil pH and potential nitrification rates, indicating that both AOB and AOA played an important role in ammonia oxidation in the soil. Phylogenetic analyses of the amoA gene fragments showed that all AOB sequences from different treatments were affiliated with Nitrosospira or Nitrosospira-like species and grouped into cluster 3, and little difference in AOB community composition was recorded among different treatments. All AOA sequences fell within cluster S (soil origin) and cluster M (marine and sediment origin). Cluster M dominated exclusively in the N, NP, NK and PK treatments, indicating a pronounced difference in the community composition of AOA in response to the long-term fertilization treatments. These findings could be fundamental to improve our understanding of the importance of both AOB and AOA in the cycling of nitrogen and other nutrients in terrestrial ecosystems.

Effects of Arbuscular Mycorrhizas on Ammonia Oxidizing Bacteria in an Organic Farm Soil

Arbuscular mycorrhizal fungi (AMF) are potentially important in nutrient cycling in agricultural soils and particularly in soils managed for organic production; little is known, however, about the interrelationships between AMF and other members of soil microbial communities. Ammonia oxidizing bacteria (AOB) are a trophic group of bacteria having an enormous impact on nitrogen availability in soils and are expected to be influenced by the presence of AMF. In a field study, we utilized a unique genetic system comprised of a mycorrhiza defective tomato mutant (named rmc) and its mycorrhiza wild-type progenitor (named 76RMYC+). We examined the effect of AMF by comparing AOB community composition and populations in soil containing roots of the two tomato genotypes in an organically managed soil. Responses of AOB to soil N and P amendments were also studied in the same experiment. Phylogenetic analysis of cloned AOB sequences, derived from excised denaturing gradient gel electrophoresis (DGGE) bands, revealed that the organic farm soil supported a diverse yet stable AOB community, which was neither influenced by mycorrhizal colonization of roots nor by N and P addition to the soil. Real-time TaqMan polymerase chain reaction (PCR) was used to quantify AOB population sizes and showed no difference between any of the treatments. An alternative real-time PCR protocol for quantification of AOB utilizing SYBR green yielded similar results as the TaqMan real-time PCR method, although with slightly lower resolution. This alternative method is advantageous in not requiring the detailed background information about AOB community composition required for adaptation of the TaqMan system for a new soil.

Community analysis of ammonia and nitrite oxidizers in start-up of aerobic granular sludge reactor

Abstract A lab-scale sequencing batch reactor (SBR) was set-up and the aerobic granular sludge was successfully incubated using anaerobic granular sludge as seed sludge. Nitrogen was partially removed by simultaneous nitrification and denitrification (SND) via nitrite with free ammonia (FA) of about 10 mg/L. The denaturing gradient gel electrophoresis (DGGE) method was used to investigate community structure of α-Proteobacteria, β-Proteobacteria, ammonia oxidizing bacteria (AOB), and Nitrospira populations during start-up. The population sizes of bacteria, AOB and Nitrospira were examined using real-time PCR method. The analysis of community structure and Shannon index showed that stable structure of AOB population was obtained at day 35, while the communities of α-Proteobacteria, β-Proteobacteria, and Nitrospira became stable after day 45. At stable stage, the average cell densities were 1.1×10 10 and 1.0×1010 cells/L for bacteria, AOB and Nitrospira, respectively. The relationship between characteristics of nitrifying bacteria community and nitrogenous substrate utilization constant was discussed by calculating Pearson correlation. Certain correlation seemed to exist between population size, biodiversity, and degradation constant. And the influence of population size might be greater than that of biodiversity.

Population Size of Ammonia-Oxidizing Bacteria in Soil Trench Systems

Population Size of Ammonia-Oxidizing Bacteria in Soil Trench Systems

Development of nitrification hot-spots around degrading red clover ( Trifolium pratense ) leaves in soil

Litterbags with clover leaves in soil were buried in the field to study the influence of degrading clover leaves on the development of elevated nitrification activity (hot-spots) in space and time. Potential NH3 oxidation activity indicating the population size of ammonia-oxidizing bacteria was measured in soil samples taken in a zone a few millimetres thick around the leaves and in bulk soil. On 3 sampling days during leaf degradation, the potential NH4+ oxidation was significantly higher in leaf-associated soil than in bulk soil, the largest difference (factor of 2) occurring 24 days after burial. At all sampling occasions, NH4+ oxidation rates followed a normal distribution, except for a log-normal distribution in the leaf-associated soil sampled 24 days after burial when some very active samples (hot-spots) appeared. In a similar laboratory experiment we examined the effects of soil water on the development of nitrification hot-spots. We observed that the development of hot-spots did not take place in soil incubated at 60% of water-holding capacity (WHC), whereas they developed faster when the soil was incubated at approximately 100% WHC. It was concluded that soil water in combination with easily degradable organic N were essential parameters for the development of nitrification hot-spots in this soil.