Copepod nauplii are a nutritious food item for first-feeding marine fish larvae. Unfortunately, mass culture techniques for producing copepod nauplii are not well established. Copepod nauplii can be collected from wild zooplankton populations or specially prepared ponds and transferred to larval fish tanks for feeding. This study evaluated the use of two trapping methods for harvesting zooplankton, particularly copepod nauplii, from fertilized ponds and the impact on the zooplankton population. Nine, 0.11 ha brackish-water (∼2-7 ppt salinity) ponds were filled and fertilized with organic and inorganic fertilizers. The change in zooplankton abundance, mainly rotifers, nauplii and adult copepods, was monitored in the ponds for 22 d following initial pond filling. Beginning on day 8, three ponds were trapped with a large plankton net (Trap I), three with a pump and bag trap method (Trap II), and three ponds were not trapped. The ponds were trapped with the corresponding method for 1 h per day, for 15 d. The two trapping methods were similar in their efficiency to harvest nauplii, averaging 8,383,400 ± 2,508,378/h and 6,695,822 ± 433,533/h for Traps I and II, respectively. The zooplankton harvested by Trap I was not correlated to the densities in the ponds. However, the number of rotifers and nauplii harvested by Trap II was correlated to the rotifer and nauplii densities in the ponds. Both trapping methods were similar in terms of labor requirements and ease of use. Both methods were effective in collecting zooplankton without negatively impacting pond abundance.