The enhancement of polyisoprene rubber performance through biomimetic simulation of the terminal effect of natural rubber has been explored. So far, the presence of synergistic effects between different terminal groups and the challenge of controlling the relaxation behavior of non-covalent bonds while preserving their advantages remain open questions. In this study, we successfully prepared natural rubber biomimetic polymers with different functionalized terminals. Specifically, we constructed terminal-olefin cross-linking points at one end of the polymer chains, while dissociable oligopeptide assemblies were formed at the other end. Investigation of the viscoelastic behavior of the polymers and the structure of the rubber network confirmed the existence of synergistic effects between different terminal groups. The terminal-olefin cross-linking points effectively anchored the rubber network and stabilized the non-covalent bonds. Simultaneously, the non-covalent bonds formed by the oligopeptides acted as weak bonds, dissipating energy and improving the dimensional stability and mechanical properties of the vulcanized rubber.