Model Polycyclic Aromatic Hydrocarbons Research Articles

Naphthalene-Degrading Bacteria with Potential for Remediating Marine Environments

Brazil is one of the largest oil producers in the world, and petroleum exploration is predominant in marine environments, mainly in the city of Rio de Janeiro. These environments become vulnerable to oil spills, which can be remedied by petroleum hydrocarbon-degrading bacteria. To better understand the distribution of polycyclic aromatic hydrocarbon (PAH)-degrading bacteria in these marine environments, water samples were collected from eight beaches (Arpoador, Grumari, Vermelha, Sahy, Itacuruçá, Itaipuaçu, Ferradura, and Itaipu) along the Rio de Janeiro coastline and further contaminated with 0.1% naphthalene, used as a PAH model. Naphthalene-enriched bacteria were isolated in marine agar, identified using 16S rRNA sequencing, and tested for emulsification and naphthalene degradation. Thirty-five different genera were observed among the 231 isolates, most belonging to Proteobacteria. Some genera were found in at least half of the studied beaches, such as Mesoflavibacter, Muricauda, Alteromonas, Salipiger, Pseudooceanicola, and Celeribacter, while others were found in only a few water samples. Seventeen and 18 strains were considered to be positive for naphthalene degradation and emulsification, respectively, making them the most promising strains for naphthalene bioremediation. Five of these strains were positive for both degradation and emulsification. This study contributes to the selection of potential candidates for further studies on the remediation of PAHs in tropical marine environments worldwide.

Promotive effects of marine-derived dimethyl sulfoxide on the photodegradation of phenanthrene in the atmosphere

Dimethyl sulfoxide (DMSO), a versatile medium, is a particular component in the marine atmosphere that possibly causes polycyclic aromatic hydrocarbons (PAHs) to degrade differently than they do in the continental atmosphere. In this study, phenanthrene (Phe) was used as a model PAH in batch photochemical experiments to investigate the chemical actions of DMSO and the underlying mechanisms. The photodegradation of Phe in aqueous solutions with DMSO volume fractions from 0 % to 100 % was initiated by ultraviolet (UV) radiation and promoted by singlet oxygen, which was consistent with pseudo-first-order kinetics. Phe photodegraded faster in a mixture of DMSO and water than in water or DMSO alone, and the rate constant showed a unimodal distribution over the DMSO fraction range, peaking at 33 % DMSO (0.0333 ± 0.0009 min−1) and 40 % DMSO (0.0199 ± 0.0005 min−1) under 254 nm and 302 nm UV radiation, respectively. This interesting phenomenon was attributed to the competition of DMSO for UV radiation and singlet oxygen and changes in dissolved oxygen and free water contents caused by the interaction between DMSO and water molecules. In addition, 9,10-phenanthrenequinone (9,10-PhQ) with high cytotoxicity was the main photodegradation product of Phe under various conditions. The photodegradation rate of Phe in the mixtures of DMSO and water was comparable to its reaction rate with OH radicals, suggesting that 9,10-PhQ can be rapidly generated in the marine atmosphere, driven by a mechanism different from that in the continental or urban atmosphere. Under the presented experimental conditions, UV intensity and DMSO fraction were the primary factors that affected the photodegradation rate of Phe and 9,10-PhQ and altered their integrated toxicity. The findings of this study support the conclusion that the marine atmosphere is an essential field in the atmospheric transport of PAHs, in which DMSO is an important component that affects their photodegradation.

AROFRAG─A Systematic Approach for Fragmentation of Aromatic Molecules.

We present a new systematic fragmentation scheme of polycyclic aromatic hydrocarbons (PAHs), including fullerenes and nanotubes, based on an idea to treat a sextet ring as a single unbreakable unit so that the basic unit of aromaticity remains preserved upon fragmentation. In the approach, denoted as AROFRAG (from aromatic fragmentation), a set of predefined elementary subsystems, such as naphthalene and biphenyl in the first model and larger PAHs in the second and third models, is generated with appropriate weights with the aim of reproducing the structure of the original molecule. The energies of the molecules are approximated as weighted sums of the energies of these subsystems. For symmetric cases, e.g., fullerenes, the point-group symmetry is preserved during the decomposition. The AROFRAG is used in conjunction with the molecule-in-molecule (MIM) technique to obtain an accurate description of the electronic energies. The new approach has been applied for selected graphene structures and fullerene doped with boron and nitrogen atoms, for which isomerization energies were calculated, as well as for several nanotubes and regular fullerene molecules. The combination of the third AROFRAG model and the MIM approach leads to the reproduction of electronic energies with a few milli-hartree accuracy at a fraction of the computational cost of the original method.

Enrichment of polycyclic aromatic hydrocarbon metabolizing microorganisms on the oral mucosa of tobacco users.

Certain soil microbes resist and metabolize polycyclic aromatic hydrocarbons (PAHs). The same is true for a subset of skin microbes. In the human mouth, oral microbes have the potential to oxidize tobacco PAHs, thereby increasing these chemicals' ability to cause cancer of adjacent epithelium. We hypothesized that we could identify, in smokers, the oral mucosal microbes that can metabolize PAH. We isolated bacteria and fungi that survived long-term in minimal media with PAHs as the sole carbon source, under aerobic conditions, from the oral mucosa in 17 of 26 smokers and two of 14 nonsmokers. Of bacteria genera that survived harsh PAH exposure in vitro, most were found at trace levels, except for Staphylococcus, Actinomyces, and Kingella, which were more abundant. Two PAH-resistant strains of Candida albicans (C. albicans) were isolated from smokers. C. albicans was a prime candidate to contribute to carcinogenesis in tobacco users as it is found orally at high levels in tobacco users on the mucosa, and some Candida species can metabolize PAHs. However, when C. albicans isolates were tested for metabolism of two model PAH substrates, pyrene and phenanthrene, they were not capable, suggesting they cannot metabolize PAH under the conditions used. In conclusion, evidence for large scale microbial degradation of tobacco PAHs under aerobic conditions on the oral mucosa remains lacking, though nonabundant PAH metabolizers are certainly present.

Enhancing Anaerobic Biodegradation of Phenanthrene in Polluted Soil by Bioaugmentation and Biostimulation: Focus on the Distribution of Phenanthrene and Microbial Community Analysis

The remediation of polycyclic aromatic hydrocarbon (PAH)-contaminated soils has received much attention in recent years, and most of the contaminated sites are in anaerobic environments, such as deep soils and flooded soils. We simulated the natural flooded soil environment, selected phenanthrene (PHE) as a model PAH contaminant, and designed batch experiments run for 63 days to comprehensively investigate the effects of the combined addition of anaerobic sludge and granular biochar on microbial community and function and the anaerobic biodegradation of PHE. Firstly, the residue, distribution, and removal of PHE in the flooded soil environment were quantified for each group. Secondly, the effects of bioaugmentation of soil indigenous microorganisms by the addition of anaerobic activated sludge and biostimulation of biochar on the removal of PHE from the soil were analyzed against each other. Lastly, the changes in the structure of the microbial community under the effect of bioaugmentation and biostimulation were illustrated by sequencing analyses. The results of this study showed that the removal efficiency of PHE reached 72.0% after the addition of anaerobic activated sludge. The incorporation of anaerobic activated sludge and biochar resulted in a 25.3% increase in PHE removal compared to a single soil, suggesting that the combination of bioaugmentation and biostimulation can have a synergistic effect on the anaerobic biodegradation of PHE in contaminated soils. The results of sequencing analysis further indicated that the introduction of an exogenous microbial community changed the dominant genera associated with PHE degradation and introduced methanogenic archaea, which enriched the metabolic pathways of the carbon cycle in the system. On this basis, the addition of biochar resulted in higher anaerobic microbial community diversity, functional dominant species were enriched, and the direct interspecies electron transfer (DIET) process between electroactive bacteria (Bacteroides, f_Geobacteraceae) and Methanosaeta was facilitated, which accelerated the degradation of PHE by anaerobic microbial communities. The results of this study provide regulatory tools and basic data support for enhanced bioremediation of PAHs in flooded soils.

Pollution Assessment with Persistent Organic Pollutants in Upper Soil of a Series of Rural Roma Communities in Transylvania, Romania, Its Sources Apportionment, and the Associated Risk on Human Health

This paper aims to assess the pollution by determining the sources of persistent organic pollutants (POPs) in 22 rural Roma communities in Transylvania in order to assess the human health risk associated with this exposure. For this, 16 polycyclic aromatic hydrocarbons (PAHs), 20 organochlorine pesticides (OCPs) and 12 polychlorinated biphenyls (PCBs) were determined in 22 soil samples collected from selected areas by gas chromatography coupled with mass spectrometry for PAHs and with electron capture detector for all halogenated compounds. Target compounds were isolated from soil by ultrasound-assisted extraction. We found that POP concentrations in soil ranged from 4.86 to 451.85 ng/g dw for PAHs, from 25.62 to 139.30 ng/g dw for OCPs, and from 0.22 to 49.12 ng/g dw for PCBs. The diagnostic ratios ƩLMW/ƩHMW, ANT/(ANT + PHE), and FLT/(FLT + PYR) strongly suggest a pyrogenic model of PAHs, such as biomass, coal, and petroleum combustion, while the isomer ratios ƩDDT/ƩHCH, α-HCH/γ-HCH and (DDE + DDD)/ƩDDT suggest that OCP residues originate from their ancient uses. Non-carcinogenic (HI) and carcinogenic (CR) risks of these organic compounds present in the soil through non-dietary pathways were in the very low-risk category (ranging from 10−8 to 10−4), indicating an absence of these risks from the investigated POPs in the studied area.

Mechanism of synergistic remediation of soil phenanthrene contamination in paddy fields by rice-crab coculture and bioaugmentation with Pseudomonas sp.

Polycyclic aromatic hydrocarbons (PAHs) are persistent and harmful pollutants with high priority concern in agricultural fields. This work constructed a rice-crab coculture and bioaugmentation (RCM) system to remediate phenanthrene (a model PAH) contamination in rice fields. The results showed that RCM had a higher remediation performance of phenanthrene in rice paddy compared with rice cultivation alone, microbial addition alone, and crab-rice coculture, reaching a remediation efficiency of 88.92 % in 42 d. The concentration of phenanthrene in the rice plants decreased to 6.58 mg/kg, and its bioconcentration effect was efficiently inhibited in the RCM system. In addition, some low molecular weight organic acids of rice root increased by 12.87 %∼73.87 %, and some amino acids increased by 140 %∼1150 % in RCM. Bioturbation of crabs improves soil aeration structure and microbial migration, and adding Pseudomonas promoted the proliferation of some plant growth-promoting rhizobacteria (PGPRs), which facilitated the degradation of phenanthrene. This coupling rice-crab coculture with bioaugmentation had favorable effects on soil enzyme activity, microbial community structure, and PAH degradation genes in paddy fields, enhancing the removal of and resistance to PAH contamination in paddy fields and providing new strategies for achieving a balance between production and remediation in contaminated paddy fields.

Overcoming methanogenesis barrier to acid inhibition and enhancing PAHs removal by granular biochar during anaerobic digestion

Alleviating acid inhibition is the most important for optimizing anaerobic digestion (AD), but the recalcitrant organic pollutants in digestates have long been ignored. In this study, we aimed to simultaneously enhance both organics bio-methanation and recalcitrant polycyclic aromatic hydrocarbons (PAHs) removal in AD system by using granule biochar and short-term ethanol stimulation. The results showed that adding biochar effectively alleviated volatile fatty acids (VFAs) accumulation and achieved 313.6 mL CH4/d•g COD average yield. Meanwhile, the efficiency of phenanthrene (PHE) biodegradation, as the model PAHs pollutant, was significantly promoted by 37.1%. Additionally, more and compact extracellular polymeric substances improved electron transfer and mass transfer among microbes, and higher enzymes (ATPase, NADH and α-Amylase) activities met the physiological demanding of efficient microbial metabolism in biochar-added reactor. Microbiological analysis revealed that biochar-mediated direct interspecies electron transfer (DIET) selectively enriched exoelectrogens (Bacteroides, Proteiniphilum, f_Christensenellaceae, etc.) and acetoclastic Methanosaeta, which contributed to increasing biomethane production. The promoted PAHs biodegradation was mainly dependent on the cooperation between fermenting f_Paludibacteraceae and hydrogenotrophic Methanolinea, and potentially related to biochar-mediated DIET. Metabolic analysis indicated that the metabolic pathways of acetogenesis and methanogenesis were significantly strengthened by biochar, thus alleviating acid inhibition. Also, biochar stimulated functional genes expression in PAHs anaerobic biodegradation. These findings were further verified by a series of short-term metabolism tests.

Insight into the effect mechanism of sedimentary record of polycyclic aromatic hydrocarbon: Isotopic evidence for lake organic matter deposition and regional development model

Deciphering the temporal patterns of polycyclic aromatic hydrocarbons (PAHs) in sediment cores, and the effect mechanism of sedimentary organic matter (OM) and regional development model on PAHs are crucial for pollution control and environmental management. Herein, sediment core was collected from Chenhu international wetland in Wuhan, central China. Meanwhile, historical trend and source of PAHs and sedimentary OM were presented, respectively. Result demonstrated that the most significant growth of PAHs (increased by 158.8%) was attributed to the significant enhancement of traffic emission (5.57 times), coal combustion (4.59 times), and biomass burning (8.09 times). Similarly, the percentage of phytoplankton (stage Ⅲ: 37.9%; stage Ⅳ: 31.2%) and terrestrial C3 plants (stage Ⅲ: 24.6%; stage Ⅳ: 29.2%) to sedimentary OM hold the dominant position after the stage Ⅱ. The obvious shifts of historical trend and sources in PAHs were highly related to economic development models (r = 0.72, p < 0.001) and sedimentary OM (r = 0.82, p < 0.001). It demonstrated that eutrophication of lake accelerated the burial of PAHs. Redundancy analysis results suggested that TOC was dominating driver of sedimentary PAHs (16.56%) and phytoplankton occupied 9.58%. To further confirm the significant role of economic development models, three different historical trends of PAHs in different regions of China were presented. The result of this study provides the new insight into the geochemistry mechanism of lake sedimentary OM and PAHs. Meanwhile, the relationship of regional development model and sedimentary PAHs was highlighted in this study. Significantly, the main environmental implications of this study are as follows: (1) lake eutrophication of phytoplankton OM accelerated the burial of PAHs in lake sediment; (2) economic development models and energy structure significantly influence the sedimentary PAHs. This study highlights the coupling relationship between OM burial and PAHs sedimentation, and the importance of accelerating the transformation of economic energy structure.

Gas stripping coupled with in-situ oxidation assisted microwave remediation of contaminated soil for efficient removal of polycyclic aromatic hydrocarbons (PAHs)

Thermal desorption technology at low temperatures has been extensively researched. However, the challenge remains in maintaining soil ecological function while effectively removing PAHs from contaminated soil using this method. Based on the gas hammer fragmentation concept, this study presents the strategy of gas stripping (steam extraction) coupled with microwave remediation. A multifunctional bluecoke-based modifier (MnO2/KHCO3@BC) was prepared followed by an investigation on the removal effect, soil characteristics and remediation mechanism of MnO2/KHCO3@BC-assisted microwave remediation of pyrene (PAHs model) contaminated soil. The research findings indicate that MnO2/KHCO3@BC is more effective in generating oxygen vacancies, facilitating surface electron transfer, and enhancing the oxidation effect of ROS on pyrene compared to KHCO3@BC and MnO2@BC. Despite having slightly inferior electromagnetic properties to BC, MnO2/KHCO3@BC could achieve a microwave remediation temperature of approximately 300 °C under optimal experimental conditions. MnO2/KHCO3@BC demonstrated remarkable pyrene removal efficiency with a maximum removal rate of 98.34%, making it an ideal candidate for pyrene remediation. Moreover, the remediated soil exhibited a weakly acidic nature, with a significant decrease in particle size and a substantial increase in potassium content. The study also highlighted a novel synergistic mechanism of ''microwave heating - gas stripping - oxidation,'' which can efficiently remove most of the pyrene adsorbed inside and outside of soil particles and degrade it into low-toxic and small-molecule organic matter, CO2, and H2O. Overall, the findings of this study could hold potential significance for upcoming endeavours concerning polluted industrial areas.

Mitochondrial dysfunction and oxidative stress contribute to cross-generational toxicity of benzo(a)pyrene in Danio rerio

The potential for polycyclic aromatic hydrocarbons (PAHs) to have adverse effects that persist across generations is an emerging concern for human and wildlife health. This study evaluated the role of mitochondria, which are maternally inherited, in the cross-generational toxicity of benzo(a)pyrene (BaP), a model PAH and known mitochondrial toxicant. Mature female zebrafish (F0) were fed diets containing 0, 12.5, 125, or 1250 μg BaP/g at a feed rate of 1% body weight twice/day for 21 days. These females were bred with unexposed males, and the embryos (F1) were collected for subsequent analyses. Maternally-exposed embryos exhibited altered mitochondrial function and metabolic partitioning (i.e. the portion of respiration attributable to different cellular processes), as evidenced by in vivo oxygen consumption rates (OCRs). F1 embryos had lower basal and mitochondrial respiration and ATP turnover-mediated OCR, and increased proton leak and reserve capacity. Reductions in mitochondrial DNA (mtDNA) copy number, increases in mtDNA damage, and alterations in biomarkers of oxidative stress were also found in maternally-exposed embryos. Notably, the mitochondrial effects in offspring occurred largely in the absence of effects in maternal ovaries, suggesting that PAH-induced mitochondrial dysfunction may manifest in subsequent generations. Maternally-exposed larvae also displayed swimming hypoactivity. The lowest observed effect level (LOEL) for maternal BaP exposure causing mitochondrial effects in offspring was 12.5 µg BaP/g diet (nominally equivalent to 250 ng BaP/g fish). It was concluded that maternal BaP exposure can cause significant mitochondrial impairments in offspring.

Residues, potential source and ecological risk assessment of polycyclic aromatic hydrocarbons (PAHs) in surface water of the East Liao River, Jilin Province, China

The environmental risks posed by polycyclic aromatic hydrocarbons (PAHs) and the diversity of their anthropogenic origins make them a global issue. Therefore, it is of utmost significance for protecting the aquatic environment and the growth of neighboring populations to identify their possible origins and ecological risk. Here, we detail the contamination profiles of 15 PAHs found in the East Liao River's surface waters in Jilin Province and use the receptor model Absolute Principal Component Analysis - Multiple Linear Regression (APCS-MLR) and diagnostic ratios method to identify the primary potential sources of pollution. Based on the natural hazard risk formation theory (NHRFT), an ecological risk assessment (ERA) model for PAHs in the East Liao River was developed. The method assesses the ecological risk status of PAHs by integrating the risk quotient (RQ) approach and the DPSIRM (driving force, pressure, state, impact, response, management) conceptual framework. Total concentrations in the surface water body were between 396.42 and 624.06 ng/L, with an average of 436.99 ng/L. The source research revealed that coal, biomass, and traffic emission sources are the most likely PAH contributors to the East Liao River. The ERA found that the majority of the sites' locations of the study were at low risk for PAHs in surface water bodies (30.7 % and 32.2 %, respectively), while only a tiny percentage of sites were at high or very high risk (1.8 % and 13.6 %). The study results provide theoretical support for the East Liao River's ecological, environmental protection, and policy formulation.

The Astrodust+PAH Model: A Unified Description of the Extinction, Emission, and Polarization from Dust in the Diffuse Interstellar Medium

We present a new model of interstellar dust in which large grains are a single composite material, “astrodust,” and nanoparticle-sized grains come in distinct varieties including polycyclic aromatic hydrocarbons (PAHs). We argue that a single-composition model for grains larger than ∼0.02 μm most naturally explains the lack of frequency dependence in the far-infrared (FIR) polarization fraction and the characteristic ratio of optical to FIR polarization. We derive a size distribution and alignment function for 1.4:1 oblate astrodust grains that, with PAHs, reproduce the mean wavelength dependence and polarization of Galactic extinction and emission from the diffuse interstellar medium while respecting constraints on solid-phase abundances. All model data and Python-based interfaces are made publicly available.

Distribution, sources, and health risk of polycyclic aromatic hydrocarbons and their derivatives in the watershed: the case of Yitong River, China

Polycyclic aromatic hydrocarbons (PAHs) and substituted PAHs (SPAHs) are persistent organic pollutants prevalent globally, and SPAHs have received widespread attention in recent years due to their stronger toxicity and carcinogenicity compared to PAHs. There is a lack of systematic examination of PAHs and their derivatives in watersheds. Thus, to clarify the current status, possible sources, and potential risks of PAHs and their derivatives in watersheds, a study was conducted on Yitong River in China. The results showed that the concentrations of ∑PAHs, ∑OPAHs, and ∑NPAHs ranged from 297.9-1158.3ng/L, 281.1-587.2ng/L, and 65.7-269.1ng/L, respectively. Diagnostic ratio analysis showed that the PAHs were mainly derived from petroleum sources, agricultural waste, and coal combustion. Nitrated PAHs (NPAHs) were mainly derived from liquid combustion sources, and oxygenated PAHs (OPAHs) were derived mainly from petroleum source emissions and atmospheric deposition. The exposure risk model of PAHs revealed that 86% of the studied sites would pose carcinogenic risks after dermal contact. The contaminant causing a major carcinogenic risk was DahA, and none of the sites produced non-carcinogenic risks. The lifetime carcinogenic risk of NPAHs was 8.85 × 10-10-1.44 × 10-4, and some surface waters presented with potential carcinogenic risks.

Anaerobic biodegradation of anthracene by oral Firmicutes isolates from smokers and its potential pathway

Exposure to polycyclic aromatic hydrocarbons (PAHs) from tobacco smoke has been linked to many negative health effects. Studies on the biodegradation of PAHs by human microbiota and detailed pathways for their anaerobic biodegradation are scarce despite their importance in getting rid of these toxic compounds. In a previous study for our group, we determined the ability of oral bacterial isolates in the anaerobic biodegradation of anthracene as a model of PAHs. Three isolates with the highest anthracene degradation ability were selected for the present study which include Limosilactobacillus fermentum, Veillonella parvula, and Streptococcus anginosus. In this study, we aimed at exploring and elucidating the anthracene anaerobic biodegradation pathways in selected Firmicutes oral isolates. Metabolites throughout the pathway were detected by gas chromatography coupled with mass spectroscopy (GC-MS) using anthracene as sole source of carbon. After incubation for 3 days, anthracene was undetected in the supernatant of L. fermentum and V. parvula, while a residual of 3% of anthracene was detected in presence of S. anginosus. Results revealed that anaerobic biodegradation by L. fermentum and V. parvula started with hydroxylation and dehydrogenation producing 9,10- anthraquinone and ended up with simpler structures such as catechol, while S. anginosus hydroxylation for anthracene resulted in the production of 1,2-anthracenediol and ended up with catechol and phthalic acid. The biodegradation of anthracene by oral bacteria could convert it to other toxic metabolites such as anthraquinone and catechol which were reported to have potential carcinogenic effects. Moreover, fatty acids detected as biodegradation metabolites could be one of the causes of smokers’ heart-related diseases. Thus, this study explored oral metabolites resulting from smoking under anaerobic conditions towards elucidating the role of oral microbiota in health and disease states.

The role of multi-low molecular weight organic acids on phenanthrene biodegradation: Insight from cellular characteristics and proteomics

Polycyclic aromatic hydrocarbons (PAHs) are carcinogenic and ubiquitous pollutants that need to be solved. The low-molecular-weight organic acid (LMWOA) holds the promise to accelerate the capacity of microbes to degrade PAHs. However, the degradation mechanism(s) with multi-LMWOAs has not been understood yet, which is closer to the complex environmental biodegradation in nature. Here, we demonstrated a comprehensive cellular and proteomic response pattern by investigating the relationship between a model PAH degrading strain, B. subtilis ZL09-26, and the mixture LMWOAs (citric acid, glutaric acid, and oxalic acid). As a result, multi-LMWOAs introduced a highly enhanced phenanthrene (PHE) degradation efficiency with up to 3.1-fold improvement at 72 h, which is accompanied by the enhancement of strain growth and activity, but the releasement of membrane damages and oxidative stresses. Moreover, a detailed proteomic analysis revealed that the synergistic perturbation of various metabolic pathways jointly governed the change of cellular behaviors and improved PHE degradation in a network manner. The obtained knowledge provides a foundation for designing the artificial LMWOAs mixtures and guides the rational remediation of contaminated soils using bio-stimulation techniques.

Recent allopolyploidy alters Spartina microRNA expression in response to xenobiotic-induced stress.

Environmental contamination by xenobiotics represents a major threat for natural ecosystems and public health. In response, xenobiotic detoxification is a fundamental trait of organisms for developmental plasticity and stress tolerance, but the underlying molecular mechanisms remain poorly understood in plants. To decipher this process, we explored the consequences of allopolyploidy on xenobiotic tolerance in the genus Spartina Schreb. Specifically, we focused on microRNAs (miRNAs) owing to their central function in the regulation of gene expression patterns, including responses to stress. Small RNA-Seq was conducted on the parents S. alterniflora and S. maritima, their F1 hybrid S. x townsendii and the allopolyploid S. anglica under phenanthrene-induced stress (phe), a model Polycyclic Aromatic Hydrocarbon (PAH) compound. Differentially expressed miRNAs in response to phe were specifically identified within species. In complement, the respective impacts of hybridization and genome doubling were detected, through changes in miRNA expression patterns between S. x townsendii, S. anglica and the parents. The results support the impact of allopolyploidy in miRNA-guided regulation of plant response to phe. In total, we identified 17 phe-responsive miRNAs in Spartina among up-regulated MIR156 and down-regulated MIR159. We also describe novel phe-responsive miRNAs as putative Spartina-specific gene expression regulators in response to stress. Functional validation using Arabidopsis (L.) Heynh. T-DNA lines inserted in homologous MIR genes was performed, and the divergence of phe-responsive miRNA regulatory networks between Arabidopsis and Spartina was discussed.

Chemotaxis along local chemical gradients enhanced bacteria dispersion and PAH bioavailability in a heterogenous porous medium

Polycyclic aromatic hydrocarbons (PAHs) are ubiquitous, EPA-designated priority pollutants for soil and groundwater, remaining recalcitrant to bioremediation because of limited bioavailability. In this work, we used naphthalene as a model PAH and soil bacteria Pseudomonas putida G7 to investigate the potential role of chemotaxis to enhance access to PAHs in heterogenous porous media. To this aim, we conducted transport experiments and numerical simulations with chemotactic bacteria and naphthalene trapped within a non-aqueous phase liquid (NAPL) mainly in low permeable areas of a dual-permeability microfluidic device. Microscopic imaging showed higher accumulations of chemotactic bacteria, about eight times that of nonchemotactic bacteria, at the junctures between high and low permeability regions. Pore-scale simulations for fluid flow and naphthalene revealed that the junctures are stagnant areas of fluid flow, which generated strong and temporally persistent naphthalene gradients. The landscape and densities of bacterial accumulation at the junctures were strongly regulated by flow profiles and naphthalene gradients especially those transverse to flow. We conducted macroscale simulations using convective dispersion equations with an added chemotactic velocity to account for directed migration toward naphthalene. Simulated results showed good consistency with experiments and pore-scale simulation as normalized bacterial accumulation per mm of NAPL was 7.80, 7.84 and 7.71 mm−1 for experiments, pore-scale and macroscale simulations, respectively. Macroscale simulations indicated that in the absence of grain-boundary restrictions associated with the pore structure bacterial dispersion needed to be increased by 50 % to account for the interplay between chemotactic response and naphthalene gradients at the pore-scale level. Our work details the mechanism of pore-scale chemotaxis in enhancing bioavailability of PAHs and its impact on biomass retention at the system level, which provides a potential solution toward more efficient bioremediation for contaminants such as PAHs with limited bioavailability.

Effects of phenanthrene on the essential oil composition and leaf metabolome in peppermint plants (Mentha piperita L.)

Polycyclic aromatic hydrocarbons (PAHs) are an important type of persistent organic pollutant that endangers soil ecosystems and human health. Cultivating aromatic plants in PAH-contaminated soils is considered a safe and sustainable phytoremediation strategy to mitigate PAH soil pollution. However, the impact of PAHs on plant essential oils and the metabolic responses within aromatic plants remain unclear. In this study, we investigated the effects of the model PAH phenanthrene (Phe) on the chemical composition of essential oils in the ubiquitous aromatic plant peppermint (Mentha piperita L.) using gas chromatography-mass spectrometry (GC-MS). A total of 56 essential oil components were identified in the plants, among which the ratios of 21 components were significantly altered by Phe exposure. However, the fundamental components of peppermint essential oils including menthol, menthone, menthofuran, and pulegone did not exhibit considerable changes in levels. Thus, Phe stress may have little effect on the primary characteristics of peppermint essential oils. We also evaluated the effects of Phe treatment on metabolome dynamics within peppermint leaves by detecting metabolites in leaves treated with Phe for 0, 1, 3, 5, and 7 days (d) using non-targeted metabolomics. Compared with their corresponding control groups, 26 key different metabolites in the Phe-treated groups were identified and annotated via enrichment analysis with the Kyoto Encyclopedia of Genes and Genomes (KEGG) database. Enriched metabolites were primarily involved in the oxidation of unsaturated fatty acids (UFAs), phenylpropanoid metabolism, amino acids, and the formation of vitamin C and caffeine. Phe treatment significantly promoted the oxidation of UFAs, phenylpropanoid metabolism, and histidine production in the first three days of Phe treatment. After 3 d, Phe gradually suppressed the oxidation of UFAs and L-glutamic acid production, while promoting phenylpropanoid metabolism, in addition to the synthesis of vitamin C and caffeine. The dynamic changes in metabolic pathway functioning in Phe-treated peppermint leaves reveal adaptive defensive mechanisms to mitigate Phe stress. This study provides new insights into the responses of aromatic plants toward PAH stress, while also providing a reference for the application of aromatic plants in the phytoremediation of PAH-contaminated soils.

GRB 180325A: dust grain-size distribution and interstellar iron nanoparticles contribution

ABSTRACT We modelled dust grain-size distributions for carbonaceous and silicates dust, as well as for free-flying iron nanoparticles in the environment of a γ-ray burst (GRB) afterglow, GRB 180325A. This GRB, at a redshift ($z$) of 2.2486, has an unambiguous detection of the 2175 Å extinction feature with RV = 4.58 and AV = 1.58 mag. In addition to silicates, polycyclic aromatic hydrocarbons (PAH), and graphite, we used iron nanoparticles grain-size distributions for the first time to model the observed extinction curve of GRB 180325A. We fit the observed extinction for four model permutations, using 232 sets of silicates, graphite, carbon abundance in hydrocarbon molecules (bC), and fraction of iron abundance in free-flying nanoparticles (YFe). These four different permutations were chosen to test iron nanoparticles significance and carbon abundance in hydrocarbons. Our results indicate that iron nanoparticles contribution is insignificant and there is a degeneracy of carbon abundances, with the range (0.0 ≤ bC ≤ 0.7) × 10−5 providing the best-fit to the observed extinction curve of GRB 180325A. We therefore favour the simplest model of silicates and PAHs. The silicates are dominant and contribute to the entire wavelength range of the GRB extinction curve while graphite contributes towards both the 2175 Å bump and the ultraviolet (UV) extinction. The afterglow peak luminosity (1.5 × 1051 erg s−1) indicates dust destruction may have taken place. We conclude that further investigations into other potential contributors of extinction are warranted, particularly for steep UV extinction.