Polar Solvents Research Articles

Effect of modifiers on the stability of 1‑butyl‑3-methylimidazolium-based ionic liquids

The distinctive capabilities of 1‑butyl‑3-methylimidazolium (bmim) cation-based ionic liquids (ILs) to dissolve lignocellulosic biomass offer the potential for the development of novel green bioprocessing technologies based on their utilization as green solvents. The limited range of thermal stability of ILs necessitates the use of various co-solvents to maintain solubility. In the present study, an original approach to determine the degree of degradation of alkylimidazolium ILs was proposed, based on the application of gravimetric analysis method to determine the content of volatile degradation products and high-performance liquid chromatography-high-resolution mass spectrometry (HPLCHRMS) to determine the total degree of degradation. The proposed approach, as well as the combination of HPLCHRMS with gas chromatography-mass spectrometry (GC–MS), was employed to comprehensively characterize the impact of additives and impurities (water, dimethyl sulfoxide, hydrochloric and acetic acids, diethylamine) on the degradation of bmim acetate, chloride, and methyl sulfate during thermal treatment under typical biomass dissolution conditions (150 °C, 24 h). The presence of additives or impurities in the composition of ILs has been found to predominantly contribute to a decrease in the number of volatile compounds formed, while increasing the variety and relative content of non-volatile degradation products. The use of protic solvents and acids results in a decrease in the overall degree of degradation of ionic liquids and in the fraction of volatile compounds formed. This allows for the classification of binary mixtures based on these additives as "green" solvents at temperatures below 150 °C.

Coarse-grained polarizable soft solvent models, with applications in dissipative particle dynamics.

We critically examine a broad class of explicitly polarizable soft solvent models aimed at applications in dissipative particle dynamics. We obtain the dielectric permittivity using the fluctuating box dipole method in linear response theory and verify the models in relation to several test cases, including demonstrating ion desorption from an oil-water interface due to image charge effects. We additionally compute the Kirkwood factor and find that it uniformly lies in the range gK≃0.7-0.8, indicating that dipole-dipole correlations are not negligible in these models. This is supported by the measurements of dipole-dipole correlation functions. As a consequence, Onsager theory over-predicts the dielectric permittivity by 20%-30%. The mean square molecular dipole moment can be accurately estimated with a first-order Wertheim perturbation theory.

Electric Field-Induced Sequential Prototropic Tautomerism in Enzyme-like Nanopocket Created by Single Molecular Break Junction.

Mastering the control of external stimuli-induced chemical transformations with detailed insights into the mechanistic pathway is the key for developing efficient synthetic strategies and designing functional molecular systems. Enzymes, the most potent biological catalysts, efficiently utilize their built-in electric field to catalyze and control complex chemical reactions within the active site. Herein, we have demonstrated the interfacial electric field-induced prototropic tautomerization reaction in acylhydrazone entities by creating an enzymatic-like nanopocket within the atomically sharp gold electrodes using a mechanically controlled break junction (MCBJ) technique. In addition to that, the molecular system used here contains two coupled acylhydrazone reaction centers, hence demonstrating a cooperative stepwise electric field-induced reaction realized at the single molecular level. Furthermore, the mechanistic studies revealed a proton relay-assisted tautomerization showing the importance of external factors such as solvent in such electric field-driven reactions. Finally, single-molecule charge transport and energetics calculations of different molecular species at various applied electric fields using a polarizable continuum solvent model confirm and support our experimental findings. Thus, this study demonstrates that mimicking an enzymatic pocket using a single molecular junction's interfacial electric field as a trigger for chemical reactions can open new avenues to the field of synthetic chemistry.

Solid‐Solid Phase Transformation Behavior of ϵ‐CL‐20 Induced by Typical Organic Solvents: A Theoretical and Experimental Study

AbstractThe solid‐solid phase transformation of ϵ‐CL‐20 induced by external conditions is one of the bottlenecks limiting the widespread applications of CL‐20‐based energetic materials. Herein, we report the investigation on the influence of solvent polarity on ϵ‐CL‐20 solid‐solid phase transformation behavior both theoretically and experimentally. Density functional theory (DFT) calculation was performed to evaluate the possibility of ϵ‐CL‐20 phase transformation induced by organic solvent molecules from the perspective of ϵ‐CL‐20 electronic structure and molecular structure variations. Additionally, experimental study of ϵ‐CL‐20 phase transformation induced by 1,2‐dichloroethane, ethanol, and methanol gas environment was conducted. Solvent with higher polarity was confirmed to significantly vary molecular surface electrostatic potential and molecular conformation of ϵ‐CL‐20 molecule. Furthermore, ϵ‐CL‐20 critical phase transformation temperature decreased when using inducing solvent with higher polarity. And the observed maximum phase transformation rate was the one induced by the highest polarity solvent. A four‐parameter model was established to describe the phase transformation process as a function of time based on the experimental results. Possible ϵ‐CL‐20 solid‐solid phase transformation mechanism was proposed. Hopefully, these results will be beneficial for the rational preparation and utilization of CL‐20‐based energetic materials.

Extending Shelf‐Life of Two‐Step Method Precursor Solutions through Targeted Regulation for Highly Efficient and Reproducible Perovskite Solar Cells

AbstractPrecursor solution aging process can cause significant influence on the photovoltaic performance of perovskite solar cells (PVSCs). Notably, we first observe that the aging phenomenon is more severe in the precursor of two‐step sequential method compared to that in one‐step method due to that the protic solvent isopropanol facilitates amine‐cation side reaction and iodide ions oxidation. Herein, we report a novel approach for selectively stabilizing both organic amine salt and lead iodide (PbI2) precursor solutions in two‐step method. The introduction of benzene‐1,3‐dithiol into organic amine salt solution can mitigate amine‐cation side reactions due to the formation of an acidic and reducing environment. Simultaneously, decamethylferrocene (FcMe10/FcMe+10) pair can act as a redox shuttle in PbI2 solution to concurrently oxidize Pb0 and reduce I2 in cyclic manner. Consequently, the PVSCs device fabricated from ameliorative precursor solutions demonstrates superior power conversion efficiency of 25.31 %, retaining 95 % of its efficiency after 21 days of solution aging. Moreover, the unencapsulated devices maintain 85 % of primitive efficiency for 1500 h at maximum power point tracking under continuous illumination. This work establishes a fundamental guidance and scientific direction for the stabilization of two‐step perovskite precursor solutions.

Investigating the effect of finite ionic size and solvent polarization on induced charge electro-osmosis around a perfectly polarizable cylinder

Many industrially relevant microfluidic applications use concentrated solutions of macro-molecular solutes dissolved in polar solvents like water, which are typically deployed at high voltages. In this study, we investigate the effect of finite ionic sizes and solvent polarization on induced charge electro-osmotic flow around a perfectly polarizable cylinder, at high electric field strengths and ionic concentrations. The flow is actuated by means of a direct current electric field, and the step response of various flow parameters are studied numerically. Finite ionic sizes, defined through a steric factor ν, are modeled using the modified Poisson–Nernst–Planck model. Additionally, a field-dependent permittivity, characterized by a solvent polarization number A, accounts for molecular re-orientation effects. Our findings reveal an ion-size modulated decrement in charge concentration in the electrical double layer and an augmentation in the electric field. Remarkably, the resulting flow velocities increase with ion size. Solvent polarization, on the other hand, results in a marked reduction in flow velocities. Steric effects, however, dominate over a large range of parameter space (applied voltage and bulk ionic concentration) as compared to solvent polarization. Finally, we demonstrate that unequal ionic sizes result in flow asymmetries at the steady-state, thereby generating net electro-phoretic motion of suspended particles.

Colorimetric and fluorimtric microenvironment responsivity of oxazolidine in solvatochromic latex nanoparticles: Versatile intelligent polymeric materials with advanced applications

Oxazolidine, a new category of stimuli-chromic dyes, has displayed a wide range of responsivities, such as halochromism, solvatochromism, ionochromism, and hydrochromism. The optical properties of oxazolidine molecules can be influenced notably by the polarity of solvent, media, and polymer nanoparticles. In this study, multi-functionalized acrylic latex nanoparticles containing different polar functional groups such as amide, amine, acid, hydroxyl, epoxide, and long-chain ester were synthesized by one-pot emulsion copolymerization. Prepared latex nanoparticles have a mean particle size in the range of 45–170 nm and spherical or non-spherical (anisotropic) morphologies depending on the polarity of functional groups. To prepare multi-color photoluminescent latex nanoparticles and investigation of solvatochromism in both colloidal solution and solid phase, as prepared multi-functionalized latex nanoparticles were modified physically with an oxazolidine derivative (5 wt%). Investigation of the solvatochromism of the oxazolidine in colloidal solution and solid phase indicated that the media is the main effective parameter for solvatochromism in colloidal solution. In the case of solid-state solvatochromism, the optical properties of oxazolidine were influenced significantly by the polarity of functional groups, because the interactions of oxazolidine molecules with functional groups of latex nanoparticles is the main parameter that influenced the solvatochromism. The solvatochromic properties of oxazolidine in solid polymer powders are useful for developing multi-color photoluminescent materials with advanced applications in the dual-mode visualization of latent fingerprints (LFPs), anticounterfeiting solid inks, and organic light-emitting diodes (OLEDs). Results displayed potential applications of multi-color polymer powders for the detection of LFPs under visible light and UV-light irradiation, for printing of optical security tags, and construction of OLEDs. The presented study introduces a new category of multi-color solid photoluminescent nanomaterials with multiple applications using solvatochromic properties.

A cautionary tale of basic azo photoswitching in dichloromethane finally explained

Many studies of azobenzene photoswitches are carried out in polar aprotic solvents as a first principles characterization of thermal isomerization. Among the most convenient polar aprotic solvents are chlorinated hydrocarbons, such as DCM. However, studies of azobenzene thermal isomerization in such solvents have led to spurious, inconclusive, and irreproducible results, even when scrupulously cleaned and dried, a phenomenon not well understood. We present the results of a comprehensive investigation into the root cause of this problem. We explain how irradiation of an azopyridine photoswitch with UV in DCM acts not just as a trigger for photoisomerization, but protonation of the pyridine moiety through photodecomposition of the solvent. Protonation markedly accelerates the thermal isomerization rate, and DFT calculations demonstrate that the singlet-triplet rotation mechanism assumed for many azo photoswitches is surprisingly abolished. This study implies exploitative advantages of photolytically-generated protons and finally explains the warning against using chlorinated solvent with UV irradiation in isomerization experiments.

Tailoring of Electrocatalytic Oxygen Evolution Reaction Performance of 2D Conductive Co-Catecholate Metal-Organic Frameworks

Herein, we report the microwave hydrothermal synthesis of highly porous and conductive 2D Co-catecholate MOFs (Co-CATs) in the absence (Co-CAT-WO) and presence (Co-CAT-W) of N-methyl-2-pyrrolidone (NMP) polar solvent, and the study of these Co-CATs as electrocatalysts for oxygen evolution reaction (OER). The OER performance of Co-CAT-WO and Co-CAT-W is compared. The as-synthesized Co-CATs exhibit a 2D layered hexagonal structure. The electrical conductivity of Co-CAT-WO and Co-CAT-W is 6.9 and 5.8 S/m, respectively. The good conductivity and porous structure can initiate charge transport to achieve better OER performance under the 4e--transfer process. The as-prepared Co-CAT-WO and Co-CAT-W, respectively, show an overpotential of 455 and 424 mV at 10 mA/cm2 after performing the durability and chronoamperometry experiments for 13 h in 1M KOH. From the electrochemical studies, it is apparent that the Co-CAT-W exhibits better OER performance with low overpotential, high current density, and excellent stability over extended cycling. Moreover, the lower HOMO-LUMO gap for Co-CAT-W than that of the Co-CAT-WO endorses its better electrocatalytic activity. The post-OER results show that the Co-CAT-W electrocatalyst acts as a "precatalyst" rather than the original catalyst, and it undergoes electrochemical transformation to metal hydroxide and metal oxyhydroxide after the OER studies, promoting the OER kinetics. The findings of this work offer valuable insights into the synthetic strategies for developing 2D conducting metal-catecholate MOF catalysts for efficient and sustainable OER processes, which is crucial in water splitting for sustainable energy production.

Biochemical Screening, In-vitro and In-silico Characterization of Citrullus colocynthis Fruit Extracts: A Combined Experimental and Computation Study.

Several medicinal plants are identified as therapeutic agents for the world's most deadly disease cancer. A member of the "Cucurbitaceae" family of medicinal plants, Citrullus colocynthis (C. colocynthis) has various pharmacological actions. In the present study we have focused on the phytochemical analysis, antimicrobial, anticancer and in silico investigation of fruit extracts of C. colocynthis. The chloroform, pure ethanolic and aq. ethanolic extracts of C. colocynthis whole fruit, peel and pulp separately have been investigated. The phytochemical analysis revealed the presence of alkaloids, flavonoids, steroids, phenols, saponins and glycosides in various parts of the fruit. Some compounds have been identified using GC-MS analysis by comparing with NIST library data. The antimicrobial activity of all extracts was checked by agar well diffusion method against five different bacterial strains such as A. baumannii, K. pneumonia, S. aureus, P. aeruginosa and E. coli. The zone of inhibition (ZOI) ranged between 11 mm to 27 mm against different strains. The polar solvent extracts (ethanolic and aq. ethanolic extract) of peel showed good sensitivity against all bacterial strains as compared to non-polar solvent (chloroform extract), which showed activity only against Staphylococcus aureus and Pseudomonas aeruginosa. The cytotoxic activity of C. colocynthis all extracts against human brain cancer cell lines (U-87) was assessed using MTT assay. The % cell viability of ethanolic (ET-PL), and aq. ethanolic extract of whole fruit and pulp showed promising results. The cancerous cell line U-87 seems to be more sensitive towards polar solvents (ethanolic and aq. ethanolic) pulp extracts than peel. Further, based on invitro results, compounds identified in ET-PP were screened for their potential as antibacterial and anticancer agents through molecular docking and MMGBSA studies. These studies strongly supported the in-vitro study results and identified new drug candidates.

Microenvironment regulation to synthesize sub-3 nm Pt-based high-entropy alloy nanoparticles enabling compressed lattice to boost electrocatalysis

Platinum (Pt) is inevitably employed to facilitate various electrocatalysis including hydrogen oxidation/evolution and oxygen reduction reactions (HOR/HER/ORR), the foundation for renewable energy conversion and storage. Pt-based high-entropy-alloy (HEA) catalysts have been recently presenting promises to improve intrinsic activity of unit mass Pt. However, their current synthesis methods always produce large particles—some can control small size but have to use complicated recipe and/or highly toxic and expensive chemicals. Alternatively, a facile microenvironment regulation strategy is herein proposed to tune solvent polarity and nanoparticle-support interactions within the precursors for carbon-thermal shock pyrolysis. We found that the decreased solvent polarity and enhanced particle-support affinity can jointly control the nanoparticle size ultimately to ~2.68nm with ~10wt % Pt loading. The compressed lattice fringe in such HEA particles leads to electron accumulation at Pt atoms and build a moderate charge density rearrangement, showing superior multifunctional HER/HOR/ORR activity to Pt/C in acidic media.

Synthesis and spectroscopic characterization of 2-furancarbothioamide: N-(4-fluorophenyl)furan-2-carbothioamide

This investigation deals with an alternative thionation synthetic strategy for the preparation of N-(4-fluorophenyl)furan-2-carbothioamide using elemental sulphur and applying the Willgerodt-Kindler reaction. The carbothioamide was obtained with ca 30% yield assessing the purity (higher than 90%) with GC/MS spectrometry, and the compound was fully characterised by NMR (1H, 13C), FTIR and UV-visible spectroscopies. Indeed, 1H-NMR spectroscopic analysis demonstrated that a single conformer with anti-anti geometry was formed attributed to the observation of only one N-H signal (9.37 ppm) of the NH-C=S group and, FTIR spectroscopy (N-H stretching at 3372 cm−1) also reinforces this observation. UV-visible absorption and fluorescence emission spectra were recorded in different polar and nonpolar solvents (acetonitrile, ethanol and n-heptane) and the λ0,0 cross point displays a bathochromic shift of 11 nm with the increasing solvent polarity. The fluorescence quantum yield (φf) has been measured at room temperature concluding that this carbothioamide derivative is not a fluorescent compound showing a φf value of 0.0002. Finally, theoretical calculations have been carried out to estimate the NMR chemical shifts as well as vibrational frequencies values of the anti-anti isomer and these values were compared with the experimental data obtaining satisfactorily correlations.

Exploring an indirect quantification strategy for PFOA in rat tissues via efficient degradation and fluorescence spectroscopy

Perfluorooctanoic acid (PFOA) has aroused global attention due to its persistence, biotoxicity and bioaccumulative properties. Monitoring PFOA levels in biological samples could give significant insights into its toxicity mechanism and health risk evaluation. Herein, to explore the distribution of PFOA in biological tissues, an indirect quantitation strategy for PFOA in biological samples was proposed based on fluorescence spectroscopy. F- ion was produced through highly efficient degradation of PFOA in polar aprotic solvent, and then F- ion was detected with highly selective F- ion fluorescent probe, which enabled the indirect quantitative detection of PFOA in biological samples. The sensitivity for PFOA was exhibited with limit of detection of 3.55 μM. The method’s accuracy and precision were validated by spiked biological sample experiment, with recovery rate ranging from 93.2 % to 105.5 % and relative standard deviation below 9.2 %. The content of PFOA was successfully detected in rats livers, kidneys and lungs tissues. Density function theory was employed to explore defluorination pathway, indicating that heating, alkaline and water conditions played a crucial role in the degradation of PFOA to produce F- ion. Thus, this novel strategy is suitable for quantitative analysis of PFOA in biological samples with high selectivity, sensitivity, recovery ratio, and simple sample preparation, which also provides a strategy for evaluating the levels of per- and polyfluoroalkyl substances in biological samples.

Solubility prediction and interaction mechanism of FOX-7 in ten solvents by molecular and thermodynamic modeling

Solubility is a fundamental physicochemical property of materials. Current solubility prediction models are often highly parameterized by existing data, leading to a serious issue of transferability; thus, it is still challenging to enhancing their accuracy and generalization-ability. In this study, we employ molecular dynamics (MD) simulations and some thermodynamic modeling methods (SMD, COSMO-RS, and COSMO-SAC) to predict the relative solubility of 1,1-diamino-2,2-dinitroethylene (FOX-7) in ten solvents. A meticulous comparison with experimental data reveals that the alchemical free energy approach based on MD simulations outperforms SMD, COSMO-RS and COSMO-SAC models in solubility prediction. Furthermore, we identify that the more negative solvation free energy corresponds to the higher solubility, and the stronger solute–solvent hydrogen bonding corresponds to the higher solubility for low polar solvents too. Finally, it is confirmed that the electrostatic attraction dominates the binding energy between solute and solvent molecules. This work transcends traditional solubility prediction by offering a robust theoretical framework and computational strategy, proving both economical and environmentally benign. It paves the way for the rational selection of solvents for FOX-7 crystallization and provides a versatile tool for predicting the solubility of organic compounds.

Identification and Characterization of a surfactin from Pseudomonas gessardii: A Symbiotic Bacterium with Potent Anticancer Activity

Prasiola japonica, traditionally used as food and folk medicine in South Korea, exerts pharmacological properties, including antioxidant, anti-inflammatory, antidiabetic, and anticancer effects. In this study, we explored symbiotic microbes associated with P. japonica and identified Pseudomonas gessardii as a nonpathogenic symbiotic bacterium through 16S rDNA sequencing. Bioactivity-guided fractionation of P. gessardii ethanol extracts, utilizing a series of non-polar to polar solvents, led to the isolation of a single bioactive compound (SF10) from the ethyl acetate fraction. Structural analysis using LC-MS and NMR spectroscopy identified SF10 as surfactin C15, a lipopeptide consisting of 7 amino acids and a β-hydroxy fatty acid chain containing 15 carbon atoms. This represents the first discovery of surfactin production in P. gessardii, expanding known surfactin-producing genera beyond Bacillus. In HT-29 colorectal cancer cells, surfactin C15 demonstrated significant anticancer activity through multiple mechanisms: inhibition of cancer stem cell marker CD133 expression, upregulation of pro-apoptotic factors (CHOP, PUMA, DR5), and modulation of cell cycle regulators (p21, cyclin E1, CDK5). Furthermore, surfactin C15 induced necrotic cell death, confirmed by increased lactate dehydrogenase release and flow cytometry analysis showing dose-dependent increases in necrotic cell populations. This study reveals a novel source of surfactin with unique cancer cell-targeting properties, particularly through its ability to induce necrosis in colorectal cancer cells, suggesting potential therapeutic applications in cancer treatment.

High contrast stimuli-responsive fluorescence emitters based on carbazole-cyanostilbene derivatives with aggregation induced emission properties

Due to the aggregation induced emission (AIE) materials exhibiting obvious fluorescent emission changes under the external stimuli of heat, solvent, force and so on, significant efforts have been directed toward developing AIE-active materials with high contrast stimuli-responsive fluorescence behaviors. Herein, three electron-donor(D)-electron-acceptor(A) and D-A-D type organic fluorescence emitters of Cz-DC-tBu, Cz-DC-CN and Cz-DC-OMe were facilely synthesized using carbazole group as D unit and cyano group as A unit. They showed typical AIE features and exhibited remarkable color changes under mechanical force and in different polarity solvents, respectively. The stimuli-responsive mechanism of the compounds were investigated by powder X-ray Diffraction (PXRD) and density functional theory calculations (DFT), which revealed that the mechanofluorochromic behaviors were associated with the molecular packing modes, and the solvatochromic effects were caused by the intramolecular charge-transfer transition (ICT) effect. Significantly, it was found that Cz-DC-tBu showed high contrast stimuli-responsive behaviors through adjusting the substituent groups on the cyanostilbene unit with CN, OMe, and tBu groups, respectively. This study provided a new strategy for the design of AIE-active stimuli-responsive fluorescence emitters, and made them possible using in stress sensors, chemical detection, memory storage, anti-counterfeiting applications.

STUDY ON THE UV-VIS SPECTROSCOPIC PROPERTIES OF SUDAN III AND SUDAN IV DYES IN DIFFERENT ORGANIC SOLVENTS

Uv/vis spectroscopy is a simple, low cost technique that can be used to identify and quantify adultrants such as azo dyes in foods. In this study, the ultraviolet-visible absorption spectral properties of Sudan III and Sudan IV dyes in non-polar solvent hexane, moderately polar solvent acetonitrile, and highly polar solvent ethanol were investigated using UV-VIS spectrophotometry. The results showed that the absorption peaks of Sudan III dye in hexane, acetonitrile and ethanol were within wavelenth ranges of 254-362 nm, 264-364 nm and 258-348 nm respectively, while the absorption peaks of Sudan IV dye in hexane, acetonitrile and ethanol were within the wavelenth ranges of 256-345nm, 262-367nm and 275- 369nm respectively, with the dyes absorbing maximally within the ultra violent region of the electromagnetic spectrum. This study will be very useful to the food scientists as it will assist in determining the appropriate wavelength for measuring/quantifying sudan lll and sudan IV dyes in food as the trend of azo dye adulteration of food such as palm oil is now rampant and has become one of the major challenges of food safety.

Influence of Solvent Polarity on Crocin Content and Surface Properties of Saffron (Crocus sativus L.) Extracts.

The saffron composition is being widely studied for authenticity and traceability, but very few works have been carried out to investigate the relationship between the chemical and physico-chemical properties of saffron solutes and their technological functionality in colloidal systems. This study aims at evaluating the surface properties of saffron extracts obtained using solvents of different polarities to achieve extracts with different compositions in terms of the pattern and content of polar and medium polarity crocins. The air-water surface was evaluated alone and in the presence of Tween 20 at different surfactant-extract ratios. Saffron extracts were able to decrease the surface tension of the aqueous phase, indicating the presence of surface-active compounds. In the mixed saffron extract-Tween 20 systems, competitive adsorption at the air-water interface occurred when the surfactant was present at a low concentration, while at concentrations higher than the CMC, Tween 20 hindered the adsorption of the extract surface-active compounds. The results highlight the interesting technological functionality of saffron extracts for applications in colloidal systems. To better exploit their use in the design and development of formulated foods, nutraceutics and pharma products, further studies are needed to unravel the relationship between the composition of saffron extracts and corresponding surface activity.

Xylose Acetals - a New Class of Sustainable Solvents and Their Application in Enzymatic Polycondensation.

The use of organic solvents in academic research and industry applications is facing increasing regulatory pressure due to environmental and health concerns. Consequently, there is a growing demand for sustainable solvents, particularly in the enzymatic synthesis and processing of polyesters. Biocatalysts offer a sustainable method for producing these materials; however, achieving high molecular weights often necessitates use of solvents. In this work, we introduce a new class of alternative aprotic solvents with medium polarity produced directly from agricultural waste biomass in up to 83 mol% yield (on xylan basis). The new solvents have a largely unmodified xylose core and acetal functionality, yet they show no peroxide formation and provide reduced flammability risk. We also demonstrate their successful application in enzymatic polycondensation reactions with Candida antarctica lipase B (CaLB). In particular, the solvent dibutylxylose (DBX) outperformed the hazardous solvent diphenyl ether and facilitated polycondensation of the lignin-derived diester pyridine-2,4-dicarboxylate, yielding polyesters with a Mn of >15 kDa. Computational modelling studies provided further insight into the molecular structure and dynamics of CaLB in the presence of new solvents. Lastly, up to 98 wt% of the new xylose acetals were successfully recovered and recycled, further contributing to the sustainability of the overall process.

On delivering polar solvation free energy of proteins from energy minimized structures using a regularized super-Gaussian Poisson-Boltzmann model.

The biomolecules interact with their partners in an aqueous media; thus, their solvation energy is an important thermodynamics quantity. In previous works (J. Chem. Theory Comput. 14(2): 1020-1032), we demonstrated that the Poisson-Boltzmann (PB) approach reproduces solvation energy calculated via thermodynamic integration (TI) protocol if the structures of proteins are kept rigid. However, proteins are not rigid bodies and computing their solvation energy must account for their flexibility. Typically, in the framework of PB calculations, this is done by collecting snapshots from molecular dynamics (MD) simulations, computing their solvation energies, and averaging to obtain the ensemble-averaged solvation energy, which is computationally demanding. To reduce the computational cost, we have proposed Gaussian/super-Gaussian-based methods for the dielectric function that use the atomic packing to deliver smooth dielectric function for the entire computational space, the protein and water phase, which allows the ensemble-averaged solvation energy to be computed from a single structure. One of the technical difficulties associated with the smooth dielectric function presentation with respect to polar solvation energy is the absence of a dielectric border between the protein and water where induced charges should be positioned. This motivated the present work, where we report a super-Gaussian regularized Poisson-Boltzmann method and use it for computing the polar solvation energy from single energy minimized structures and assess its ability to reproduce the ensemble-averaged polar solvation on a dataset of 74 high-resolution monomeric proteins.