This paper attempts to explore the trajectory tracking problem for underactuated marine vessels from a Lagrangian perspective. First, we derive the vessel’s dynamics from Euler-Lagrangian equations and its kinematics from the mechanical constraint, both in the polar frame. The benefit of using polar frame is that we can transform the two-input-three-output underactauted system into a two-input-two-output form such that it becomes easy for us to solve the control problem using general backstepping method. In this paper, the main focus is taken on that how to improve the control performance by fully utilizing the features of the vessel’s nonlinear dynamics from the Lagrangian perspective. Some numerical studies are also carried out to investigate and analyse the effectiveness of the proposed scheme.