Poaceae Species Research Articles

Poaceae Pollen from Southern Brazil: Distinguishing Grasslands (Campos) from Forests by Analyzing a Diverse Range of Poaceae Species.

This aim of this study was to distinguish grasslands from forests in southern Brazil by analyzing Poaceae pollen grains. Through light microscopy analysis, we measured the size of the pollen grain, pore, and annulus from 68 species of Rio Grande do Sul. Measurements were recorded of 10 forest species and 58 grassland species, representing all tribes of the Poaceae in Rio Grande do Sul. We measured the polar, equatorial, pore, and annulus diameter. Results of statistical tests showed that arboreous forest species have larger pollen grain sizes than grassland and herbaceous forest species, and in particular there are strongly significant differences between arboreous and grassland species. Discriminant analysis identified three distinct groups representing each vegetation type. Through the pollen measurements we established three pollen types: larger grains (>46 μm), from the Bambuseae pollen type, medium-sized grains (46–22 μm), from herbaceous pollen type, and small grains (<22 μm), from grassland pollen type. The results of our compiled Poaceae pollen dataset may be applied to the fossil pollen of Quaternary sediments.

HIGH NATURE VALUE GRASSLANDS FROM ARRHENATHERION ALLIANCE IDENTIFIED IN MUREŞ COUNTY

Arrhenatherion alliance meadows are recognized to be among the best pastures in our country due to high productivity and good nutrition value. The research was conducted in several areas of Mures County. The studied grasslands were classified into two types of Natura 2000 habitats: 6510 Lowland hay meadows (Alopecurus pratensis, Sanguisorba officinalis) and 6520 Mountain hay meadows. The identified phytocoenosis belong to two plant associations: Arrhenatheretum elatioris Br.-Bl. Ex Scherrer 1925 and Poo Trisetetum flavescentis (Knapp 1951) Oberd. 1957. The analysis of data collected in the field reveals that the current state of conservation of the two types of habitat is good and very good. Habitats in a good and very good state of preservation is distinguish by a great floristic composition: approx. 100-150 cormophyte species with good and very good forage value. As habitats are more susceptible to the management applied and any changes to land use can affect habitat quality (eg abandoning mowing and turning the land into pasture), the ecological functions of this habitat will be satisfied as long as they are mowed after Poaceae species matured.

Complete plastid genome sequence of goosegrass (Eleusine indica) and comparison with other Poaceae

Eleusine indica, also known as goosegrass, is a serious weed in at least 42 countries. In this paper we report the complete plastid genome sequence of goosegrass obtained by de novo assembly of paired-end and mate-paired reads generated by Illumina sequencing of total genomic DNA. The goosegrass plastome is a circular molecule of 135,151bp in length, consisting of two single-copy regions separated by a pair of inverted repeats (IRs) of 20,919 bases. The large (LSC) and the small (SSC) single-copy regions span 80,667 bases and 12,646 bases, respectively. The plastome of goosegrass has 38.19% GC content and includes 108 unique genes, of which 76 are protein-coding, 28 are transfer RNA, and 4 are ribosomal RNA. The goosegrass plastome sequence was compared to eight other species of Poaceae. Although generally conserved with respect to Poaceae, this genomic resource will be useful for evolutionary studies within this weed species and the genus Eleusine.

Tricin‐lignins: occurrence and quantitation of tricin in relation to phylogeny

Tricin [5,7-dihydroxy-2-(4-hydroxy-3,5-dimethoxyphenyl)-4H-chromen-4-one], a flavone, was recently established as an authentic monomer in grass lignification that likely functions as a nucleation site. It is linked onto lignin as an aryl alkyl ether by radical coupling with monolignols or their acylated analogs. However, the level of tricin that incorporates into lignin remains unclear. Herein, three lignin characterization methods: acidolysis; thioacidolysis; and derivatization followed by reductive cleavage; were applied to quantitatively assess the amount of lignin-integrated tricin. Their efficiencies at cleaving the tricin-(4'-O-β)-ether bonds and the degradation of tricin under the corresponding reaction conditions were evaluated. A hexadeuterated tricin analog was synthesized as an internal standard for accurate quantitation purposes. Thioacidolysis proved to be the most efficient method, liberating more than 91% of the tricin with little degradation. A survey of different seed-plant species for the occurrence and content of tricin showed that it is widely distributed in the lignin from species in the family Poaceae (order Poales). Tricin occurs at low levels in some commelinid monocotyledon families outside the Poaceae, such as the Arecaceae (the palms, order Arecales) and Bromeliaceae (Poales), and the non-commelinid monocotyledon family Orchidaceae (Orchidales). One eudicotyledon was found to have tricin (Medicago sativa, Fabaceae). The content of lignin-integrated tricin is much higher than the extractable tricin level in all cases. Lignins, including waste lignin streams from biomass processing, could therefore provide a large and alternative source of this valuable flavone, reducing the costs, and encouraging studies into its application beyond its current roles.

Chemotaxonomy as a tool for interpreting the cryptic diversity of Poaceae pollen

The uniform morphology of different species of Poaceae (grass) pollen means that identification to below family level using light microscopy is extremely challenging. Poor taxonomic resolution reduces recoverable information from the grass pollen record, for example, species diversity and environmental preferences cannot be extracted. Recent research suggests Fourier Transform Infra-red Spectroscopy (FTIR) can be used to identify pollen grains based on their chemical composition. Here, we present a study of twelve species from eight subfamilies of Poaceae, selected from across the phylogeny but from a relatively constrained geographical area (tropical West Africa) to assess the feasibility of using this chemical method for identification within the Poaceae family. We assess several spectral processing methods and use K-nearest neighbour (k-nn) analyses, with a leave-one-out cross-validation, to generate identification success rates at different taxonomic levels. We demonstrate we can identify grass pollen grains to subfamily level with an 80% success rate. Our success in identifying Poaceae to subfamily level using FTIR provides an opportunity to generate high taxonomic resolution datasets in research areas such as palaeoecology, forensics, and melissopalynology quickly and at a relatively low cost.

Banco de sementes do solo após aplicação de herbicidas pré-emergentes durante quatro safras de cana-de-açúcar

Resumo: O objetivo deste trabalho foi avaliar o efeito dos herbicidas pré-emergentes indaziflam, indaziflam+metribuzim e diuron+hexazinone sobre o banco de sementes do solo de lavoura de cana-de-açúcar, durante quatro safras consecutivas. Utilizou-se o delineamento experimental de blocos ao acaso, com quatro repetições, em parcelas subdivididas. Os tratamentos consistiram de doses dos seguintes herbicidas: indaziflam, 75, 100 e 150 g i.a. ha-1; indaziflam+metribuzim, 75 + 960 g i.a. ha-1; e diuron+hexazinone, 936 + 264 g i.a. ha-1; além de área capinada, como testemunha. O banco de sementes foi analisado nas camadas do solo de 0,00-0,10 e 0,10‒0,20 m. Realizaram-se a contagem e a identificação de plântulas emergidas, e calcularam-se a densidade, a frequência e a abundância absolutas e relativas, bem como o índice de valor de importância. Nos tratamentos 100 e 150 g i.a. ha-1 de indaziflam, houve maior redução do banco de sementes total e do índice de valor de importância das espécies de Poaceae e Asteraceae. O banco de sementes total, na camada de 0,10‒0,20 m, e o da espécie Portulaca oleracea, nas duas camadas avaliadas, não são influenciados pelos herbicidas. O uso dos herbicidas pré-emergentes, durante quatro safras consecutivas, reduz o banco de sementes do solo na camada de 0,0‒0,10 m, em lavoura de cana-de-açúcar.

Two new species of Tripogon (Poaceae: Chloridoideae: Tripogoninae): from India

Two new species of Poaceae, Tripogon karnatakensis and T. munnarensis from South India are described and illustrated. T. karnatakensis closely resembles T. filiformis, but differs in having 15–28 cm long leaden green spikes with 2-keeled lower glumes. T. munnarensis closely resembles T. narayanae, but differs in having 10–16 mm long spikelets with 10–16 florets.

Ischaemum agharkarii (Andropogoneae, Poaceae), a new species from Northern Western Ghats, India

Ischaemum agharkarii, a new species of Poaceae from the Northern Western Ghats of India is described and illustrated here. It is closely similar to two Indian endemic species, I. travancorense and I. santapaui but differs in having hairy first node, presence of side nodules on lower glume of both sessile and pedicelled spikelets, band of hairs on ventral side of lower glume and other morphological features. We provide detailed morphological description, distribution map and photographs of the new species.

Hymenachne panduranganii sp. nov. from Nilgiri Biosphere Reserve, India

Hymenachne panduranganii, a new species of Poaceae collected from a wetland area of Wayanad Wildlife Sanctuary in Kerala, which constitutes the core area of Nilgiri Biosphere Reserve (NBR), is described and illustrated. The new species differs from the related species H. assamica in having 1.0–1.5 m tall culms, 3.7–4.0 mm long spikelets, floret with a distinct lower palea and having only 2 stamens. To further enunciate the differences, an identification key to the Indian species of Hymenachne is provided.

Systematic Investigation of FLOWERING LOCUS T-Like Poaceae Gene Families Identifies the Short-Day Expressed Flowering Pathway Gene, TaFT3 in Wheat (Triticum aestivum L.).

To date, a small number of major flowering time loci have been identified in the related Triticeae crops, bread wheat (Triticum aestivum), durum wheat (T. durum), and barley (Hordeum vulgare). Natural genetic variants at these loci result in major phenotypic changes which have adapted crops to the novel environments encountered during the spread of agriculture. The polyploid nature of bread and durum wheat means that major flowering time loci in which recessive alleles confer adaptive advantage in related diploid species have not been readily identified. One such example is the PPD-H2 flowering time locus encoded by FLOWERING LOCUS T 3 (HvFT3) in the diploid crop barley, for which recessive mutant alleles confer delayed flowering under short day (SD) photoperiods. In autumn-sown barley, such alleles aid the repression of flowering over the winter, which help prevent the development of cold-sensitive floral organs until the onset of inductive long day (LD) photoperiods the following spring. While the identification of orthologous loci in wheat could provide breeders with alternative mechanisms to fine tune flowering time, systematic identification of wheat orthologs of HvFT3 has not been reported. Here, we characterize the FT gene families in six Poaceae species, identifying novel members in all taxa investigated, as well as FT3 homoeologs from the A, B and D genomes of hexaploid (TaFT3) and tetraploid wheat. Sequence analysis shows TaFT3 homoeologs display high similarity to the HvFT3 coding region (95–96%) and predicted protein (96–97%), with conservation of intron/exon structure across the five cereal species investigated. Genetic mapping and comparative analyses in hexaploid and tetraploid wheat find TaFT3 homoeologs map to the long arms of the group 1 chromosomes, collinear to HvFT3 in barley and FT3 orthologs in rice, foxtail millet and brachypodium. Genome-specific expression analyses show FT3 homoeologs in tetraploid and hexaploid wheat are upregulated under SD photoperiods, but not under LDs, analogous to the expression of HvFT3. Collectively, these results indicate that functional wheat orthologs of HvFT3 have been identified. The molecular resources generated here provide the foundation for engineering a novel major flowering time locus in wheat using forward or reverse genetics approaches.

In-silico characterisation and comparative mapping of yellow stripe like transporters in five grass species

Iron (Fe) and Zinc (Zn) are the key elements required for many of the biological process in plants and animals. Transporter proteins are essential for uptake, transport and accumulation for Fe and Zn in plants. The present investigation was undertaken to study and compare the structural and functional diversity and evolutionary significance of the yellow stripe-like (YSL) transporters through in-silico tools in five species (barley, Brachypodium, foxtail millet, maize and rice) of Poaceae. One hundred and two YSL transporters collected from public databases were used in the analysis. All YSL transporters possessed PF03169 domain which belongs to the oligo peptide transporters (OPT) super family. Molecular weight of YSL proteins ranged from 11.10 to 84.70 kDa while pI values ranged from 4.99 to 11.64. Scondary structure analysis identified that, alpha helix and random coils were the most common structures of the YSL proteins. Phylogenetic analysis revealed that the YSL transporters are highly conserved in these five grass species. Comparative mapping of genes of YSL transporters showed maximum synteny between Brachypodium and barley (30%) followed by Brachypodium and rice (25%). Neutrality test has in fact revealed the positive or Darwinian selection on YSL transporters. The results of the present investigation provided a significant understanding of the structural and biological role of YSL transporters as well as the evolutionary pattern in Poaceae family.

Emergence of a New Population of Rathayibacter toxicus: An Ecologically Complex, Geographically Isolated Bacterium.

Rathayibacter toxicus is a gram-positive bacterium that infects the floral parts of several Poaceae species in Australia. Bacterial ooze is often produced on the surface of infected plants and bacterial galls are produced in place of seed. R. toxicus is a regulated plant pathogen in the U.S. yet reliable detection and diagnostic tools are lacking. To better understand this geographically-isolated plant pathogen, genetic variation as a function of geographic location, host species, and date of isolation was determined for isolates collected over a forty-year period. Discriminant analyses of recently collected and archived isolates using Multi-Locus Sequence Typing (MLST) and Inter-Simple Sequence Repeats (ISSR) identified three populations of R. toxicus; RT-I and RT-II from South Australia and RT-III from Western Australia. Population RT-I, detected in 2013 and 2014 from the Yorke Peninsula in South Australia, is a newly emerged population of R. toxicus not previously reported. Commonly used housekeeping genes failed to discriminate among the R. toxicus isolates. However, strategically selected and genome-dispersed MLST genes representing an array of cellular functions from chromosome replication, antibiotic resistance and biosynthetic pathways to bacterial acquired immunity were discriminative. Genetic variation among isolates within the RT-I population was less than the within-population variation for the previously reported RT-II and RT-III populations. The lower relative genetic variation within the RT-I population and its absence from sampling over the past 40 years suggest its recent emergence. RT-I was the dominant population on the Yorke Peninsula during the 2013–2014 sampling period perhaps indicating a competitive advantage over the previously detected RT-II population. The potential for introduction of this bacterial plant pathogen into new geographic areas provide a rationale for understanding the ecological and evolutionary trajectories of R. toxicus.

New insights into the evolutionary history of resistance gene candidates in coconut palms and their expression profiles in palms affected by lethal yellowing disease

The nucleotide binding site and leucine rich repeat (NBS–LRR) class of R genes is the most comprehensively studied in terms of sequence evolution; however, in coconut palm and, more generally, in the family of Arecaceae, our understanding of the evolution of these genes is rather limited. In this study, disease resistance gene candidates (RGCs) of the nucleotide binding site (NBS) type of coconut palm were used to investigate evolutionary relationships in Arecaceae, Poaceae and Brassicaceae species. The results indicate a species-specific evolution of RGCs in coconut palm. However, strikingly similar RGCs between species of Arecales indicate a high conservation of specific RGCs of this family, suggesting a monophyletic origin of three genera. The phylogenetic relationship between RGCs of Arecales and Brassicales suggests that these sequences possibly emerged before being divided between monocots and dicots. Finally the comparative analysis of the expression of four RGCs in healthy coconut palm and those affected with lethal yellowing disease revealed differences in their expression profiles. This study provides new insights for future efforts towards the improvement of disease resistance in coconut palm and other species of Arecaceae.

De novo Transcriptome Analysis and Molecular Marker Development of Two Hemarthria Species

Hemarthria R. Br. is an important genus of perennial forage grasses that is widely used in subtropical and tropical regions. Hemarthria grasses have made remarkable contributions to the development of animal husbandry and agro-ecosystem maintenance; however, there is currently a lack of comprehensive genomic data available for these species. In this study, we used Illumina high-throughput deep sequencing to characterize of two agriculturally important Hemarthria materials, H. compressa “Yaan” and H. altissima “1110.” Sequencing runs that used each of four normalized RNA samples from the leaves or roots of the two materials yielded more than 24 million high-quality reads. After de novo assembly, 137,142 and 77,150 unigenes were obtained for “Yaan” and “1110,” respectively. In addition, a total of 86,731 “Yaan” and 48,645 “1110” unigenes were successfully annotated. After consolidating the unigenes for both materials, 42,646 high-quality SNPs were identified in 10,880 unigenes and 10,888 SSRs were identified in 8330 unigenes. To validate the identified markers, high quality PCR primers were designed for both SNPs and SSRs. We randomly tested 16 of the SNP primers and 54 of the SSR primers and found that the majority of these primers successfully amplified the desired PCR product. In addition, high cross-species transferability (61.11–87.04%) of SSR markers was achieved for four other Poaceae species. The amount of RNA sequencing data that was generated for these two Hemarthria species greatly increases the amount of genomic information available for Hemarthria and the SSR and SNP markers identified in this study will facilitate further advancements in genetic and molecular studies of the Hemarthria genus.

Checklist of Serengeti Ecosystem Grasses.

We present the first taxonomic checklist of the Poaceae species of the Serengeti, Tanzania. A review of the literature and herbarium specimens recorded 200 species of grasses, in line with similar studies in other parts of East Africa. The checklist is supported by a total of 939 herbarium collections. Full georeferenced collection data is made available alongside a summary checklist in pdf format. More than a quarter of the species are known from a single collection highlighting the need for further research, especially concerning the rare species and their distribution.

Aerobiological and phenological study of the main Poaceae species in Córdoba City (Spain) and the surrounding hills

This study reports on the flowering phenology of 12 Poaceae species in different types of plant cover (scrub, riverbank and pasture), with a view to creating a phenological calendar for the major species contributing most to airborne pollen concentrations. The study has been carried out from March to June between 2000 and 2013. Seventeen sampling sites in the study area were selected by accessibility, and predominantly, grasses grow in different land covers for phenological monitoring. Airborne pollen was collected using a Hirst-type volumetric spore trap. Results showed that longer phenological ranges were recorded in the wettest year and shorter ranges in the driest year. Over the study period, certain species displayed changes in the timing of flowering phenology. In pastureland and scrubland, a slight phenological delay over the study period has been recorded. In pastureland, some species—i.e., Bromus madritensis, B. diandrus and B. hordeaceus, Hordeum leporinum and Stipa capensis—displayed a delay in the timing of phenophases over the study period, including B. hordeaceus and B. madritensis on riverbank. Dactylis glomerata and Trisetaria panicea in scrub have been the only species with a clear advance; B. diandrus and B. madritensis a clear flowering delay. Lolium rigidum, Dactylis glomerata, Aegilops geniculata, in scrub, riverbank and pasture, and Arrhenatherum album, only in scrub, full flowering coincided with pollen peak in some populations during several years.

Dissection of early transcriptional responses to water stress in Arundo donax L. by unigene-based RNA-seq.

BackgroundArundo donax L. (Poaceae) is considered one of the most promising energy crops in the Mediterranean region because of its high biomass yield and low input requirements, but to date no information on its transcriptional responses to water stress is available.ResultsWe obtained by Illumina-based RNA-seq the whole root and shoot transcriptomes of young A. donax plants subjected to osmotic/water stress with 10 and 20 % polyethylene glycol (PEG; 3 biological replicates/organ/condition corresponding to 18 RNA-Seq libraries), and identified a total of 3034 differentially expressed genes. Blast-based mining of stress-related genes indicated the higher responsivity of roots compared to shoots at the early stages of water stress especially under the milder PEG treatment, with a majority of genes responsive to salt, oxidative, and dehydration stress. Analysis of gene ontology terms underlined the qualitatively different responses between root and shoot tissues. Among the most significantly enriched metabolic pathways identified using a Fisher’s exact test with FDR correction, a crucial role was played in both shoots and roots by genes involved in the signaling cascade of abscisic acid. We further identified relatively large organ-specific differences in the patterns of drought-related transcription factor AP2-EREBP, AUX/IAA, MYB, bZIP, C2H2, and GRAS families, which may underlie the transcriptional reprogramming differences between organs. Through comparative analyses with major Poaceae species based on Blast, we finally identified a set of 53 orthologs that can be considered as a core of evolutionary conserved genes important to mediate water stress responses in the family.ConclusionsThis study provides the first characterization of A. donax transcriptome in response to water stress, thus shedding novel light at the molecular level on the mechanisms of stress response and adaptation in this emerging bioenergy species. The inventory of early-responsive genes to water stress identified could constitute useful markers of the physiological status of A. donax and be a basis for the improvement of its productivity under water limitation. The full water-stressed A. donax transcriptome is available for Blast-based homology searches through a dedicated web server (http://ecogenomics.fmach.it/arundo/).Electronic supplementary materialThe online version of this article (doi:10.1186/s13068-016-0471-8) contains supplementary material, which is available to authorized users.

Factors influencing seed germination in Cerrado grasses

Few studies address the ecology of herbs of Cerrado grasslands, which are ecosystems where the long dry season, high temperatures, insolation, fire and invasive grasses greatly influencing germination and the establishment of plants. We assessed germination of 13 species of Poaceae from Cerrado grasslands under nursery conditions or in germination chambers, the latter with i) recently collected seeds and seeds after six months storage, ii) under constant and alternating temperatures, and iii) in the presence and absence of light. Germinability, mean germination time (MGT) and required light were quantified to elucidate factors involved in successful germination. Germinability was low for most grasses, probably because of low seed viability. For most species, germinability and MGT were not altered by seed storage. Germination percentages were higher at alternating temperatures and in the presence of light, factors that are more similar to natural environmental situations compared with constant temperature or the absence of light. Our findings indicate that alternating temperatures and light incidence are key factors for germination of species of Poaceae. The maintenance of these environmental factors, which are crucial for the conservation of Cerrado grasslands, depends on appropriate management interventions, such as fire management and the control of biological invasion.

AM and DSE colonization of invasive plants in urban habitat: a study of Upper Silesia (southern Poland).

Interactions between invasive plants and root endophytes may contribute to the exploration of plant invasion causes. Twenty plant species of alien origin differing in invasiveness were studied in terms of status and typical structures of arbuscular mycorrhizal fungi and dark septate endophytes (DSE) in urban habitats in Silesia Upland (southern Poland). We observed that 75 % of investigated plant species were mycorrhizal. The arbuscular mycorrhiza (AM) of most plant species was of the Arum morphology. The nearly 100 % mycorrhizal frequency, high intensity of AM colonization within root cortex and the presence of arbuscules in all mycorrhizal plant species indicate that the investigated species are able to establish AM associations in the secondary range and urban habitats. DSE were present in all mycorrhizal and non-mycorrhizal species. The frequency of DSE was significantly lower in non-mycorrhizal group of plants, however, sclerotia of DSE were found mainly in the roots of non-mycorrhizal plant species. The group of species native to North America including three Solidago congeners have the highest values of all AM mycorrhization and DSE indices. Moreover, we observed that most mycorrhizal invasive species belonged to the family Asteraceae. In turn, representatives of Poaceae had the lowest values of AM mycorrhization. Nevertheless, quite high values of DSE frequency were also encountered in roots of Poaceae species. The high invasiveness of the representatives of the Asteraceae family from North America support theory that both taxonomic pattern, and the fact of root endophytes colonization contribute to invasion success. While, the taxa of Reynoutria also represent successful invaders but they are of Asiatic origin, non-mycorrhizal and weakly colonized by DSE fungi.Electronic supplementary materialThe online version of this article (doi:10.1007/s10265-016-0802-7) contains supplementary material, which is available to authorized users.

An illustrated guide to the identification of the known species of Diatraea Guilding (Lepidoptera, Crambidae, Crambinae) based on genitalia.

The genus Diatraea Guilding is one of the most economically important groups of moths in the Western Hemisphere. The larvae are stem borers that feed on species of Poaceae, or grasses, such as sugarcane, corn, rice, and sorghum, as well as many other native grasses. Interest in this group has risen considerably since sugarcane and other grasses have been utilized and/or investigated as biofuels. This is the first modern study to treat all 41 valid described species. Most type specimens were examined and we provide a checklist with 19 new synonyms. We provide keys for the identification of most species in this genus based on morphology of the male and female genitalia and modern illustrations of male and female genitalia. We also provide an updated table of species distribution by country.