Submarine hydrothermal plumes play an important role in the process of material and energy exchange in the deep sea. Due to the influence of complex environmental factors (multiple vents, deep-sea stratified environment) and the limitation of observation capabilities, the dynamic characteristics of submarine hydrothermal plumes have not been fully understood, and it is urgent to study the diffusion and evolution process of submarine hydrothermal plumes by the computational fluid dynamics (CFD) model. In this paper, a CFD model was established to effectively simulate the diffusion and evolution process of two-vent submarine hydrothermal plumes under the deep-sea stratified environment, obtained the three-dimensional plume flow field structure of two-vent submarine hydrothermal plumes, and obtained the spatial distribution of dynamic characteristics parameters such as velocity, turbulent viscosity, turbulent kinetic energy and turbulence dissipation rate of two-vent submarine hydrothermal plumes. The equations for calculating the maximum plume rise height and the neutrally buoyant plume height of a two-vent submarine hydrothermal plume were deduced and established. In addition, a comparative analysis of the single-vent submarine hydrothermal plume revealed the mechanism of the influence of the key characteristics of the two-vent submarine hydrothermal plumes such as the maximum plume rise height. It was applied to analyze the dynamic characteristics of the plume occurred in Longqi hydrothermal field in the southwest Indian Ocean, and the results were verified by the field observation data. The spatial distribution of mass concentration of hydrothermal plume particles was further analyzed, and the difference of mass concentration in different hydrothermal plume structures was compared to study the exchange mechanism of material and energy between submarine hydrothermal plume and surrounding seawater. The results are of guiding significance for the tracing of submarine hydrothermal vents, the study of marine material exchange and energy transport processes, and the exploration and environmental evaluation of submarine polymetallic sulfide resources.