This study offers a new record of laminated ooze for paleoclimate, paleoceanography and paleoecology interpretation in the deep ocean, promoting search for other similar records in the West Pacific Ocean to improve understanding of Ethmodiscus rex ooze formation and relative paleoenvironmental change. The laminated diatomaceous ooze includes large quantities of fragmented E. rex in a box core retrieved from the Challenger Deep, Southern Mariana Trench. Radiocarbon dating of the ooze revealed the studied sediment to originate during an interval of ca. 23 400 to ca. 6620 cal. yr. BP, inserting a hiatus during ca. 19 800 - 16 800 cal. yr. BP. This is the first geochronology data to constrain the E. rex ooze time span across the Pleistocene/Holocene boundary, compared to previous studies in this West Pacific Ocean trench. In this study, the laminated diatomaceous E. rex ooze type, with increased abundance of fragmented E. rex valves is mainly documented during ca. 23 400 - 19 800 cal. yr. BP. within the Last Glacial Maximum stage, at ca. 12 900 - 11 500 cal. yr. BP. in the Younger Dryas stadial, and around 9000–7700 cal. yr. BP. in the Postglacial.These data show a response to the paleoclimatic conditions with late Pleistocene cold periods that triggered E. rex diatom bloom that strongly competed for nutrients in this principally oligotrophic region. These phenomena are likely to be linked with terrestrial nutrients input through the aeolian dust transfer by winter Monsoon and the silicon supply from Southern Ocean via thermohaline circulation. In the Postglacial, the E. rex bloom generated a high ooze accumulation rate in terms of higher flux deposition with a complicated formation mechanism.