Shoot Research Articles

CLE peptides act via the receptor-like kinase CRINKLY 4 in Physcomitrium patens gametophore development

ABSTRACT The CLAVATA pathway plays a key role in the regulation of multicellular shoot and root meristems in flowering plants. In Arabidopsis, CLAVATA 3-like signaling peptides (CLEs) act via receptor-like kinases CLAVATA 1 and CRINKLY 4 (CR4). In the moss Physcomitrium patens, PpCLAVATA and PpCR4 were previously studied independently and shown to play conserved roles in the regulation of cell proliferation and differentiation. The plant calpain DEFECTIVE KERNEL 1 (DEK1) has been identified as another key regulator of cell division and cell fate in vascular plants and bryophytes. The functional interaction between CLAVATA, CR4, and DEK1 remains unknown. Here, we show that P. patens crinkly4 and dek1 mutants respond differently to CLE peptide treatments suggesting their distinct roles in the CLAVATA pathway. Reduced CLAVATA-mediated suppression of leafy shoot growth in Δcr4 mutants indicates that PpCR4 is involved in CLV3p perception, most likely as a receptor. The CLV3p strongly suppressed leaf vein development in Δcr4 mutants, suggesting that other receptors are involved in these processes and indicating a potential role of PpCR4 in organ sensitization to CLEs.

How much biochar is safe? Exploring potential ecotoxicological consequences for soil invertebrates and plants

The application of biochar in soil has shown promising potential for mitigating the toxicity of contaminated soils due to its unique properties. However, the understanding of its adverse effects on soil biota remains limited. This study aimed to investigate the potential ecotoxicological effects of incorporating sugarcane straw biochar into clay and sandy soils. This research assessed three biochar dosages (2 %, 5 %, and 10 %) and their effects on four species: the springtails Sinella curviseta and Proisotoma minuta, the worm Enchytraeus crypticus, and the plant Eruca sativa L. The results revealed that biochar incorporation had positive effects on plant growth, increasing biomass, and shoot and root length in E. sativa, with more pronounced effects in clay soil. However, the effects on the survival, reproduction, and growth of springtails varied depending on the species and soil type, with a reduction in the survival of P. minuta in both soils (2,2 and 2,9 times lower in clay soil and sandy soil respectively) and S. curviseta only in clay soil (24 % to 36 % decrease). The reproduction of P. minuta decreased in both soils (34 % - 48 % in sandy soil and 50 % - 80 % in clay soil), while the reproduction of S. curviseta decreased only at the lowest proportion of biochar in the clay soil (18 % decrease). For E. crypticus, biochar improved both survival and reproduction, especially in sandy soil (1.9 and 11 times greater respectively). Therefore, biochar has positive effects on worms and plants, indicating the potential to improve soil health and support ecosystem resilience, but it has deleterious effects on springtails at certain dosages. The effects of biochar amendments on soil characteristics and the effects of biochar-induced toxicity should be considered to avoid potential risks to representative species. The findings presented herein address lacunae in ecotoxicology by delineating safe concentrations of biochar for various soil species, thus paving the way for subsequent validation of optimal application doses.

Microbial Biostimulants and Seaweed Extract Synergistically Influence Seedling Growth and Morphology of Three Onion Cultivars

Onion (Allium cepa L.), a globally cultivated vegetable crop, possesses a shallow root system, making it vulnerable to abiotic stresses. The increasing frequency of extreme weather events in recent years necessitates sustainable solutions to enhance onion growth. Biostimulants offer a promising and accessible approach to promote onion growth and quality in an environmentally friendly and sustainable manner. This study investigated the effects of nine commercial microbial biostimulants (LALRISE Mycorrhizae, LALRISE Bacillus, Mighty Mycorrhizae, MycoApply, Spectrum DS, Spectrum Myco, Spectrum, Tribus Original, and Tribus Continuum) and one non-microbial commercial biostimulant (Kelpak—seaweed extract) on the seedling growth of three onion cultivars: Carta Blanca (white), Don Victoro (yellow), and Sofire (red). The results indicated that biostimulants did not significantly affect onion seed germination, but germination rates did vary among the onion cultivars. These cultivars also exhibited significant morphological and biomass differences, with principal component analysis revealing a more obvious effect on root growth compared to shoot growth. Kelpak seaweed extract increased the plant height, leaf area, and shoot fresh weight and dry weight of onion seedlings but decreased the root-to-shoot dry-weight ratio. The effects of microbial biostimulants on onion seedling growth depended on both the onion cultivar and Kelpak seaweed extract. In general, LALRISE Mycorrhizae, Mighty Mycorrhizae, Spectrum Myco, Spectrum DS, and Tribus Continuum exhibited positive effects on seedling growth in certain onion cultivars. Furthermore, the benefits of microbial biostimulants were amplified when combined with Kelpak seaweed extract application. These findings suggest a synergistic interaction between microbial and non-microbial biostimulants, leading to enhanced onion seedling growth. Further research is required to evaluate the long-term effects of these biostimulants on onion plant growth after transplanting to fields.

Chitosan and its Nanoform Regulates Physiological Processes and Antioxidant Mechanisms to Improve Drought Stress Tolerance of Vicia faba Plant

Purpose: Drought stress is an important challenge to global food security and agricultural output. Dramatic and quick climate change has made the problem worse. It caused unexpected impacts on the growth, development, and yield of different plants. Hence, the ultimate yield does not fulfill the required demand. Understanding the biochemical, ecological, and physiological reactions to these pressures is essential for improved management. Chitosan applications have a wide prospect of addressing abiotic issues. Moreover, chitosan and chitosan nanoparticles have a positive impact on increasing plant tolerance to abiotic stress, like drought stress. The current research investigated the consequences of drought stress on the morpho-physiological and biochemical parameters of Vicia faba plants, a comparison of chitosan and chitosan nanoparticles, and their ameliorating capacity towards drought stress. Methods: A pot experiment was conducted to evaluate the beneficial role of either chitosan (0.5, 1.0, and 2.0 gL− 1) or chitosan NPs (10, 20, and 30 mgL− 1) in inducing the Vicia faba tolerance to drought stress (60% water field capacity). Results: Drought stress significantly affected vegetative growth parameters of the shoot system, photosynthetic pigments, and indole acetic acid, accompanied by significant increases in vegetative growth parameters of the root system, some chemical composition of dry leaf tissues (total soluble sugar, soluble protein, proline, phenolic compound, glutathione, α tocopherol), hydrogen peroxide, malonialdehyde, lipoxygenase, and antioxidant enzyme activities (catalase, peroxidase, superoxide dismutase, ascorbate peroxidase, glutathione reductase). All applied treatments. chitosan and chitosan nanoparticles, at all concentrations, improved plant tolerance to drought stress via increasing vegetative growth parameters, photosynthetic pigments, indole acetic acid, total soluble sugar, soluble protein, proline, phenolic compound, glutathione, α tocopherol, and antioxidant enzyme activities, accompanied by decreases in hydrogen peroxide, malondialdehyde, and lipoxygenase enzyme. It is worthy to mention that 20 mgL− 1 chitosan nanoparticles was the most optimal treatment either under well water conditions (90% water field capacity) or drought stress conditions (60% water field capacity). Moreover, it is obvious from these results that the response of bean plants grown under well watered conditions was more pronounced than that of those plants grown under drought stress conditions to 20 mgL− 1 chitosan nanoparticles. Conclusions: Hence, it can be concluded that chitosan and chitosan nanoparticles can mitigate the negative impacts of drought stress by improving the photosybthetic pigments, endogenous indole acetic acid, and osmolyte contents, as well as the non-enzymatic and enzymatic antioxidant compounds of the Vicia faba plant.

GhMAX2 Contributes to Auxin-Mediated Fiber Elongation in Cotton (Gossypium hirsutum).

Strigolactones (SLs) represent a new group of phytohormones that play a pivotal role in the regulation of plant shoot branching and the development of adventitious roots. In cotton (Gossypium hirsutum, Gh), SLs play a crucial role in the regulation of fiber cell elongation and secondary cell wall thickness. However, the underlying molecular mechanisms of SL signaling involved in fiber cell development are largely unknown. In this study, we report two SL-signaling genes, GhMAX2-3 and GhMAX2-6, which positively regulate cotton fiber elongation. Further protein-protein interaction and degradation assays showed that the repressor of the auxin cascade GhIAA17 serves as a substrate for the F-box E3 ligase GhMAX2. The in vivo ubiquitination assay suggested that GhMAX2-3 and GhMAX2-6 ubiquitinate GhIAA17 and coordinately degrade GhIAA17 with GhTIR1. The findings of this investigation offer valuable insights into the roles of GhMAX2-mediated SL signaling in cotton and establish a solid foundation for future endeavors aimed at optimizing cotton plant cultivation.

Physiological and metabolomic analyses reveal the resistance response mechanism to tea aphid infestation in new shoots of tea plants (Camellia sinensis)

The tea plant (Camellia sinensis (L.) O. Kuntze) is an important woody economic crop and often attacked by various insect pests such as tea aphids (Toxoptera aurantii Boyer de Fonscolombe). To reveal tea plant responses to tea aphid infestation, tea aphid-resistant cultivar ‘Taicha13’ and -susceptible one ‘Jingfeng’ were first screened, and then widely targeted metabolomics profiling, biochemical parameter and RT-qPCR analyses were performed in three samples, TCN (tea aphid non-infested ‘Taicha13’), JFN (tea aphid non-infested ‘Jingfeng’) and JFA (tea aphid-infested ‘Jingfeng’). The results showed amnio acid (plus proline) and protein content, and amnio acid: sucrose ratio were significantly less abundant in TCN relative to JFN, suggesting TCN is low nutritional quality for tea aphids. Metabolite profiling revealed that flavonoids and JA-isoleucine (JA-Ile) were more enriched in TCN and JFA compared to JFN, proposing effective roles of flavonoids and JA-Ile in tea plant defense against tea aphid infestation. RT-qPCR results demonstrated that five JA biosynthesis genes (CsLOX2, CsLOX3, CsOPR, CsAOC and CsJAR) in exception of CsAOS, and six flavonoid biosynthesis genes (CsPAL, CsC4H, CsCHS1, CsCHS2, CsFL and CsDFR) shared similarly higher abundance in TCN than in JFN, and exhibited elevated expression levels in JFA relative to JFN, further suggesting flavonoids and JA confer tea plant resistance against tea aphid feeding. Overall, our findings uncovered that tea aphid-infestation activated defensive responses and highlighted involvement of nutritional quality, flavonoids and JA-Ile in tea plant resistance against tea aphid infestation.

Ecological processes of bacterial microbiome assembly in healthy and dysbiotic strawberry farms

The bacterial microbiome plays crucial role in plants’ resistance to diseases, nutrient uptake and productivity. We examined the microbiome characteristics of healthy and unhealthy strawberry farms, focusing on soil (bulk soil, rhizosphere soil) and plant (roots and shoots). The relative abundance of most abundant taxa were correlated with the chemical soil properties and shoot niche revealed the least amount of significant correlations between the two. While alpha and beta diversities did not show differences between health groups, we identified a number of core taxa (16–59) and marker bacterial taxa for each healthy (Unclassified Tepidisphaerales, Ohtaekwangia, Hydrocarboniphaga) and dysbiotic (Udaeobacter, Solibacter, Unclassified Chitinophagales, Unclassified Nitrosomonadaceae, Nitrospira, Nocardioides, Tardiphaga, Skermanella, Pseudomonas, Allorhizobium-Neorhizobium-Pararhizobium-Rhizobium, Curtobacterium) niche. We also revealed selective pressure of strawberry rhizosphere soil and roots plants in unhealthy plantations increased stochastic ecological processes of bacterial microbiome assembly in shoots. Our findings contribute to understanding sustainable agriculture and plant-microbiome interactions.

Combined effects of heatwaves and atmospheric CO₂ levels on Brassica juncea phytoremediation

Heatwaves, expected to become more frequent, pose a significant threat to plant biomass production. This experiment was designed to estimate heatwave influence on Brassica juncea phytoremediation when superimposed on different CO2 levels. A 7-day heatwave was generated during the species flowering stage. Heatwaves decreased all B. juncea dry weights. The lowest species dry weight was recorded when the heatwave was accompanied by 250 ppm CO2, in which the biomass significantly decreased by 40.0% relative to that of no heatwave under the same atmospheric CO2 conditions. Heatwave superposition with 250 ppm CO2 reduced the Cd content in B. juncea aerial parts by 28.1% relative to that of identical environmental conditions without heatwave, whereas the opposite result was observed under 550 ppm CO2 conditions. The heatwave caused oxidative damage to B. juncea under all CO2 conditions, as manifested by increased malondialdehyde levels in the plant shoots. With heatwave superposition, antioxidant enzyme activity was enhanced by exposure to 400 and 550 ppm CO2. Considering biomass yield generation and Cd uptake capacity, heatwave superposition decreased the B. juncea phytoremediation effects, and high atmospheric CO2 conditions could alleviate detrimental effects to a certain extent. This study uniquely examines the combined effects of heatwaves and varying CO2 levels on phytoremediation, providing microscopic insights into oxidative damage and enzyme activity, highlighting the potential for CO2 enrichment to mitigate heatwave impacts, and offering comprehensive analysis for future agricultural practices and environmental management.

Evidence of Cooperative Interactions between Rhizobacteria and Wood-Decaying Fungi and Their Effects on Maize Germination and Growth

Advances in soil microbial communities are driving agricultural practices towards ecological sustainability and productivity, with engineering microbial communities significantly contributing to sustainable agriculture. This study explored the combined effects of two white-rot fungi (Trametes sp. and Pleurotus sp.) and six rhizobacterial strains belonging to four genera (Acinetobacter sp., Enterobacter sp., Flavobacterium sp., and Pseudomonas sp.) on maize growth and soil enzymatic activity over a 14-day period. At the plant level, germination, fresh and dry mass of the aerial and root parts, length, and stage of development of the stem, as well as the chlorophyll content, were evaluated. Furthermore, soil dehydrogenase, acid and alkaline phosphatases, pH, and electrical conductivity were evaluated. Rot fungi induced distinct effects on maize germination, with Pleurotus sp. strongly suppressing maize germination by 40% relative to that of the control. The isolated bacterial strains, except Enterobacter sp. O8, and 8 of the 12 fungus + bacterial strain combinations induced germination rates higher than those of the control (≥40%). Combinations of Flavobacterium sp. I57 and Pseudomonas sp. O81 with the rot fungus Pleurotus sp. significantly improved plant shoot length (from 28.0 to 37.0 cm) and developmental stage (fourth leaf length increase from 10.0 to 16.8 cm), respectively, compared with the same bacteria alone or in combination with the rot fungus Trametes sp. In the soil, the presence of both fungi appeared to stabilize phosphatase activity compared to their activity when only bacteria were present, while also promoting overall dehydrogenase enzymatic activity in the soil. Integrating all parameters, Trametes sp. rot fungus + Enterobacter sp. O8 may be a potential combination to be explored in the context of agricultural production, and future studies should focus on the consistency of this combination’s performance over time and its effectiveness in the field.

Phytoremediation Characterization of Heavy Metals by Some Native Plants at Anthropogenic Polluted Sites in Jeddah, Saudi Arabia

Many anthropogenic activities have lately resulted in soil adulteration by heavy metals (HMs). The assessment of native plant species that grow in the polluted environments is of great importance for using these plants in phytoremediation techniques. This study was conducted in three industrial regions in Jeddah city, Wadi Marik, Bahra, and Khumrah, to assess the HM contamination level in them. This study also evaluated the phytoremediation ability of nine plant species collected from the studied regions. Soil physicochemical properties of the studied sites were investigated. Nine HMs, aluminum (Al), nickel (Ni), zinc (Zn), cobalt (Co), iron (Fe), lead (Pb), manganese (Mn), chromium (Cr), and barium (Ba), have been evaluated in the collected soil, plant shoots, and root samples. Total thiol concentration in the plant shoots and roots was determined. The phytoremediation indexes, such as bioaccumulation factor (BCF) and translocation factor (TF), were estimated. The results show that the soil of all the explored sites was sandy and slightly alkaline. It was found that Ni, Pb, and Cr were above the international permissible limit in all soil samples. The Wadi Marik region recorded the highest HM concentration compared to the other sites. In the Bahra region, Fe, Zn, Co, and Mn in all collected soil samples were below internationally permissible levels. In Khumrah, the highest concentration of Zn was found in the soil sample collected around F. indica plants, while Fe, Co, and Mn in all collected soil samples were below the international permissible limit. Depending on the BCF calculations, most of the investigated species showed phytostabilization ability for most of the studied HMs. Of them, E. indica, T. nubica, and P. divisum recorded the highest BCF values that ranged from 16.1 to 3.4. The BCF values of the studied HMs reduced in the order of Cr > Zn > Mn > Co > Ba > Fe > Al > Pb. Phytoextration of Co and Cr could be achieved by P. oleracea and F. indica, which showed TF values that reached 6.7 and 6.1, respectively. These plants showed high potential for phytoremediation and can be suggested as protective belts close to the contaminated regions of Jeddah.

Exploring the influence of rapeseed cultivar and pathogen isolate on Acremonium alternatum's efficacy in clubroot disease control

Clubroot disease, caused by Plasmodiophora brassicae, ranks among the most significant diseases affecting rapeseed cultivars, leading to substantial annual yield losses. Current control methods are limited to a small selection of chemical or biological treatments. Using biocontrol organisms presents a promising strategy for reducing disease severity and promoting plant vigour. However, their efficacy is strongly dependent on biotic and abiotic factors during the growing season, as well as the specific application conditions. In the present study, we evaluated the efficacy of the biocontrol fungus Acremonium alternatum in reducing clubroot disease symptoms across different susceptible and resistant rapeseed cultivars (Brassica napus) under various experimental greenhouse settings employing different types of P. brassicae inoculum: a uniform single spore isolate e3 and two German field isolates P1 and P1 ( +). We found that A. alternatum can reduce clubroot disease symptoms in susceptible rapeseed cultivars Visby, Ability and Jenifer, but not cv. Jumbo, when inoculated with the aggressive single spore isolate P. brassicae e3 at moderate (106 spores mL−1) and high (107 spores mL−1) densities. A. alternatum enhanced plant vitality and shoot biomass in cv. Visby inoculated with field isolates P1 or P1 ( +) but did not considerably reduce clubroot severity there. The clubroot-resistant cv. Mentor displayed a reduction in clubroot symptoms after A. alternatum treatment. In conclusion, A. alternatum holds some promise in managing moderate P. brassicae levels in the soil and could serve as an option in integrated pest management of clubroot disease when combined with resistant cultivars.

Unveiling the efficacy of Bacillus faecalis and composted biochar in alleviating arsenic toxicity in maize

Arsenic (As) contamination is a major environmental pollutant that adversely affects plant physiological processes and can hinder nutrients and water availability. Such conditions ultimately resulted in stunted growth, low yield, and poor plant health. Using rhizobacteria and composted biochar (ECB) can effectively overcome this problem. Rhizobacteria have the potential to enhance plant growth by promoting nutrient uptake, producing growth hormones, and suppressing diseases. Composted biochar can enhance plant growth by improving aeration, water retention, and nutrient cycling. Its porous structure supports beneficial microorganisms, increasing nutrient uptake and resilience to stressors, ultimately boosting yields while sequestering carbon. Therefore, the current study was conducted to investigate the combined effect of previously isolated Bacillus faecalis (B. faecalis) and ECB as amendments on maize cultivated under different As levels (0, 300, 600 mg As/kg soil). Four treatments (control, 0.5% composted biochar (0.5ECB), B. faecalis, and 0.5ECB + B. faecalis) were applied in four replications following a completely randomized design. Results showed that the 0.5ECB + B. faecalis treatment led to a significant rise in maize plant height (~ 99%), shoot length (~ 55%), root length (~ 82%), shoot fresh (~ 87%), and shoot dry weight (~ 96%), root fresh (~ 97%), and dry weight (~ 91%) over the control under 600As stress. There was a notable increase in maize chlorophyll a (~ 99%), chlorophyll b (~ 81%), total chlorophyll (~ 94%), and shoot N, P, and K concentration compared to control under As stress, also showing the potential of 0.5ECB + B. faecalis treatment. Consequently, the findings suggest that applying 0.5ECB + B. faecalis is a strategy for alleviating As stress in maize plants.

Analysis of the distribution and persistence of organophosphorus pesticides malathion and diazinon in herbal plants

Introduction. Determination of pesticide residues presence in herbal plants and preparations based on them is an important step in confirming safety at the stage of the quality control of herbal plants. The usage of organophosphate pesticides (OPs) for the purposes of treatment of medicinal plants in the growing process is increasing. Scientific sources provide information on the detection of OPs in herbal plants, including quantities exceeding the allowed percentage limits as it is settled in regulatory documentation. At the same time, the problem of the distribution of particular kinds of OPs in the organs of herbal plants and their persistence remains understudied.Aim. The present research aims to study the distribution in various parts of the herbal plants (marigolds, valerian, and stinging nettle) and the persistence of malathion and diazinon.Materials and methods. Stinging nettle, that grows everywhere, exclusively cultivated marigolds, and valerian were selected as model plants. All of the plants were divided into three equal groups. Young plant shoots were processed twice with "Aliot" products containing 570 g/l of malathion and "Terradox" containing 40 g/kg of diazinon. The first group of plants was processed with pesticides following the manufacturer's instructions. The second group was treated in quantities, that were three times higher than the recommended dosage. The third group (control), was not processed with pesticides. Samples of various parts of growing herbal plants were analyzed at certain time points with the HPLC-MS/MS method according to the developed methodology. In order to study the persistence, we carried out a repeated analysis of dried samples stored without access to sunlight 0.5 years after the first one according to the requirements of the State Pharmacopoeia of the Russian Federation XV.Results and discussion. The authors found malathion and diazinon in all of the analyzed parts of medicinal marigolds, in leaves and roots of nettle dioecious, in deciduous shoots and rhizomes with roots of valerian officinalis. The highest proportion of pesticides was discovered in underground plant organs. When processed according to the instructions, in marigold and nettle roots and in rhizomes with valerian roots 16.7 mg/kg, 4.5 mg/kg, and 1.7 mg/kg of malathion and 19.6 mg/kg, 4.1 mg/kg, and 1.5 mg/kg of diazinon were found, respectively. These quantities exceed the allowed limits. The quantity of pesticides in the flowers of medicinal marigolds does not exceed the permissible values. The research on the persistence of these OPs data demonstrates that malathion and diazinon persist in plant tissues for a long time.Conclusion. As a result of the research quantitative characteristics of the distribution of malathion and diazinon in various parts of medicinal marigolds, medicinal valerian, and dioecious nettle, as well as the rate and the extent of degradation of OPs during six months, were determined.

Enhancing lavender (Lavandula angustifolia Mill.) propagation in vertical farming system: Investigating the impact of LED red-to-blue ratios and subsequent post-potting growth dynamics

This study aims to examine the influence of red-to-blue (R:B) LED light ratios on the propagation of Lavandula angustifolia within a vertical farming system. Additionally, it seeks to evaluate the persistent effects of LED lighting treatments on post-potting development in a glasshouse.The objective of this study is to assess how different R:B LED light ratios impact Lavandula angustifolia propagation in a vertical farming system and to analyze the enduring effects of these lighting treatments during the post-potting development stage in a glasshouse.The study consists of two phases. In the initial phase, an analysis was conducted on root emergence, root and shoot biomass, chlorophyll content, and flower bud emergence. Two LED treatments, labeled L1 and L2, were employed, with specific R:B ratios (7:1 and 9:1) and light intensities set at 140 µmol m−2 s−1 and 100 µmol m−2 s−1, respectively. Correlation and regression analyses were performed to understand the relationships among the various parameters.In Phase One, the L1 and L2 LED treatments significantly enhanced root emergence and biomass. Notably, the R:B ratios of 7:1 and 9:1, with corresponding intensities of 140 µmol m−2 s−1 and 100 µmol m−2 s−1, demonstrated substantial improvements. In the subsequent glasshouse phase, plants previously treated with L1 exhibited superior plant height and shoot biomass.The findings of this study highlight the intricate relationships among different parameters, providing valuable insights for lavender cultivation practices. The positive outcomes, particularly observed in the L1 treatment, emphasize the potential of vertical farming systems and LED lighting in optimizing lavender growth dynamics. This study underscores the importance of specific R:B ratios, contributing to sustainable propagation strategies, and acknowledges the space-efficient nature of vertical farming systems.

Horizontal gene transfer of the Mer operon is associated with large effects on the transcriptome and increased tolerance to mercury in nitrogen-fixing bacteria

BackgroundMercury (Hg) is highly toxic and has the potential to cause severe health problems for humans and foraging animals when transported into edible plant parts. Soil rhizobia that form symbiosis with legumes may possess mechanisms to prevent heavy metal translocation from roots to shoots in plants by exporting metals from nodules or compartmentalizing metal ions inside nodules. Horizontal gene transfer has potential to confer immediate de novo adaptations to stress. We used comparative genomics of high quality de novo assemblies to identify structural differences in the genomes of nitrogen-fixing rhizobia that were isolated from a mercury (Hg) mine site that show high variation in their tolerance to Hg.ResultsOur analyses identified multiple structurally conserved merA homologs in the genomes of Sinorhizobium medicae and Rhizobium leguminosarum but only the strains that possessed a Mer operon exhibited 10-fold increased tolerance to Hg. RNAseq analysis revealed nearly all genes in the Mer operon were significantly up-regulated in response to Hg stress in free-living conditions and in nodules. In both free-living and nodule environments, we found the Hg-tolerant strains with a Mer operon exhibited the fewest number of differentially expressed genes (DEGs) in the genome, indicating a rapid and efficient detoxification of Hg from the cells that reduced general stress responses to the Hg-treatment. Expression changes in S. medicae while in bacteroids showed that both rhizobia strain and host-plant tolerance affected the number of DEGs. Aside from Mer operon genes, nif genes which are involved in nitrogenase activity in S. medicae showed significant up-regulation in the most Hg-tolerant strain while inside the most Hg-accumulating host-plant. Transfer of a plasmid containing the Mer operon from the most tolerant strain to low-tolerant strains resulted in an immediate increase in Hg tolerance, indicating that the Mer operon is able to confer hyper tolerance to Hg.ConclusionsMer operons have not been previously reported in nitrogen-fixing rhizobia. This study demonstrates a pivotal role of the Mer operon in effective mercury detoxification and hypertolerance in nitrogen-fixing rhizobia. This finding has major implications not only for soil bioremediation, but also host plants growing in mercury contaminated soils.

Characterization of Physiological and Biochemical Attributes of Neem (Azadirachta indica A. Juss) under Salinity Stress

Salinity poses a significant threat to agricultural productivity worldwide, with its detrimental effects on plant growth and physiological processes. Understanding the mechanisms by which plants respond to salt stress is crucial for developing strategies to mitigate its impact on crop yield and sustainability. To address this issue, a pot study was conducted to determine the effect of salt stress on the physiological and biochemical attributes of neem (Azdiarchta indica A. Juss). Plants were grown for 10 months in pots filled with soil having different salinity levels of 3, 6, 9, 12, 15, and 18 dS m−1 and compared with a control of 1.7 dS m−1. The results showed that plant growth and chlorophyll contents declined as salinity levels increased. Due to oxidative stress, the contents of H2O2 increased under higher salt levels. The mitigation of oxidative stress was achieved through the activation of antioxidant enzymes (catalase, ascorbate peroxidase, peroxidase, and superoxide dismutase). Multivariate analysis indicated that Na+ accumulation in plants was positively related to H2O2 production and enzymatic activities, and negatively related to plant biomass, chlorophyll contents, root and shoot K+ concentration, and root K+/Na+. The experimental results suggest that neem plants can be grown in moderate saline soils.

Zno nanoparticles: improving photosynthesis, shoot development, and phyllosphere microbiome composition in tea plants

BackgroundNanotechnology holds revolutionary potential in the field of agriculture, with zinc oxide nanoparticles (ZnO NPs) demonstrating advantages in promoting crop growth. Enhanced photosynthetic efficiency is closely linked to improved vigor and superior quality in tea plants, complemented by the beneficial role of phyllosphere microorganisms in maintaining plant health. However, the effects of ZnO NPs on the photosynthesis of tea plants, the sprouting of new shoots, and the community of phyllosphere microorganisms have not been fully investigated.ResultsThis study investigated the photosynthetic physiological parameters of tea plants under the influence of ZnO NPs, the content of key photosynthetic enzymes such as RubisCO, chlorophyll content, chlorophyll fluorescence parameters, transcriptomic and extensive targeted metabolomic profiles of leaves and new shoots, mineral element composition in these tissues, and the epiphytic and endophytic microbial communities within the phyllosphere. The results indicated that ZnO NPs could enhance the photosynthesis of tea plants, upregulate the expression of some genes related to photosynthesis, increase the accumulation of photosynthetic products, promote the development of new shoots, and alter the content of various mineral elements in the leaves and new shoots of tea plants. Furthermore, the application of ZnO NPs was observed to favorably influence the microbial community structure within the phyllosphere of tea plants. This shift in microbial community dynamics suggests a potential for ZnO NPs to contribute to plant health and productivity by modulating the phyllosphere microbiome.ConclusionThis study demonstrates that ZnO NPs have a positive impact on the photosynthesis of tea plants, the sprouting of new shoots, and the community of phyllosphere microorganisms, which can improve the growth condition of tea plants. These findings provide new scientific evidence for the application of ZnO NPs in sustainable agricultural development and contribute to advancing research in nanobiotechnology aimed at enhancing crop yield and quality.Graphical

Mapping of flumioxazin tolerance in a snap bean diversity panel leads to the discovery of a master genomic region controlling multiple stress resistance genes.

Effective weed management tools are crucial for maintaining the profitable production of snap bean (Phaseolus vulgaris L.). Preemergence herbicides help the crop to gain a size advantage over the weeds, but the few preemergence herbicides registered in snap bean have poor waterhemp (Amaranthus tuberculatus) control, a major pest in snap bean production. Waterhemp and other difficult-to-control weeds can be managed by flumioxazin, an herbicide that inhibits protoporphyrinogen oxidase (PPO). However, there is limited knowledge about crop tolerance to this herbicide. We aimed to quantify the degree of snap bean tolerance to flumioxazin and explore the underlying mechanisms. We investigated the genetic basis of herbicide tolerance using genome-wide association mapping approach utilizing field-collected data from a snap bean diversity panel, combined with gene expression data of cultivars with contrasting response. The response to a preemergence application of flumioxazin was measured by assessing plant population density and shoot biomass variables. Snap bean tolerance to flumioxazin is associated with a single genomic location in chromosome 02. Tolerance is influenced by several factors, including those that are indirectly affected by seed size/weight and those that directly impact the herbicide's metabolism and protect the cell from reactive oxygen species-induced damage. Transcriptional profiling and co-expression network analysis identified biological pathways likely involved in flumioxazin tolerance, including oxidoreductase processes and programmed cell death. Transcriptional regulation of genes involved in those processes is possibly orchestrated by a transcription factor located in the region identified in the GWAS analysis. Several entries belonging to the Romano class, including Bush Romano 350, Roma II, and Romano Purpiat presented high levels of tolerance in this study. The alleles identified in the diversity panel that condition snap bean tolerance to flumioxazin shed light on a novel mechanism of herbicide tolerance and can be used in crop improvement.

Photosynthate transfer from an autotrophic orchid to conspecific heterotrophic protocorms through a common mycorrhizal network.

The minute 'dust seeds' of some terrestrial orchids preferentially germinate and develop as mycoheterotrophic protocorms near conspecific adult plants. Here we test the hypothesis that mycorrhizal mycelial connections provide a direct pathway for transfer of recent photosynthate from conspecific green orchids to achlorophyllous protocorms. Mycelial networks of Ceratobasidium cornigerum connecting green Dactylorhiza fuchsii plants with developing achlorophyllous protocorms of the same species were established on oatmeal or water agar before the shoots of green plants were exposed to 14CO2. After incubation for 48 h, the pattern of distribution of fixed carbon was visualised in intact entire autotrophic/protocorm systems using digital autoradiography and quantified in protocorms by liquid scintillation counting. Both methods of analysis revealed accumulation of 14C above background levels in protocorms, confirming that autotrophic plants supply carbon to juveniles via common mycorrhizal networks. Despite some accumulation of plant-fixed carbon in the fungal mycelium grown on oatmeal agar, a greater amount of carbon was transferred to protocorms growing on water agar, indicating that the polarity of transfer may be influenced by sink strength. We suggest this transfer pathway may contribute significantly to the pattern and processes determining localised orchid establishment in nature, and that 'parental nurture' via common mycelial networks may be involved in these processes.

Response of sweet potato cultivars to Bacillus velezensis T149-19 and Bacillus safensis T052-76 used as biofertilizers

The global market of sweet potato (Ipomoea batatas (L.) Lam.) is continuously growing and, consequently, demands greater productivity from the agricultural sector. The use of biofertilizers facilitates plant growth by making essential nutrients available to crops or providing resistance against different abiotic and biotic factors. The strains Bacillus safensis T052-76 and Bacillus velezensis T149-19 have previously been inoculated in the sweet potato cultivar Ourinho, showing positive effects on plant shoot growth and inhibiting the phytopathogen Plenodomus destruens. To elucidate the effects of these strains on sweet potato growth, four different cultivars of sweet potato were selected: Capivara, IAPAR 69, Rosinha de Verdan and Roxa. The plants were grown in pots in a greenhouse and inoculated with the combined strains according to a randomized block design. A control (without the inoculation of both strains) was also used. A slight positive effect of the inoculation of the two Bacillus strains was observed on the aerial parts of some of the cultivars. An increase in the fresh weight of the sweet potatoes of the inoculated plants was obtained, varying from 2.7 to 11.4 %. The number of sweet potatoes obtained from the inoculated cultivars IAPAR 69 and Roxa increased 15.2 % and 16.7 %, respectively. The rhizosphere soil of each cultivar was further sampled for DNA extraction, and the 16S rRNA gene metabarcoding technique was used to determine how the introduction of these Bacillus strains influenced the rhizosphere bacterial community. The bacterial communities of the four different cultivars were dominated by Actinobacteria, Proteobacteria and Firmicutes. Nonmetric multidimensional scaling (NMDS) revealed that the rhizosphere bacterial communities of plants inoculated with Bacillus strains were more similar to each other than to the bacterial communities of uninoculated plants. This study highlights the contribution of these Bacillus strains to the promotion of sweet potato growth.