Plant-microbe Interactions Research Articles

Antifungal Properties of Streptomyces bacillaris S8 for Biological Control Applications.

Soybean (Glycine max), a crucial global crop, experiences yearly yield reduction due to diseases such as anthracnose (Colletotrichum truncatum) and root rot (Fusarium spp.). The use of fungicides, which have traditionally been employed to control these phytopathogens, is now facing challenges due to the emergence of fungicide-resistant strains. Streptomyces bacillaris S8 strain S8 is previously known to produce valinomycin t through a nonribosomal peptide synthetase (NRPS) pathway. The objective of this study was to evaluate the antifungal activity of S. bacillaris S8 against C. truncatum and Fusarium sp., assessing its efficacy against soybean pathogens. The results indicate that strain S8 effectively controlled both above-ground and underground soybean diseases, using the NRPS and NRPS-related compound, suggesting its potential as a biological control in plant-microbe interactions. These findings underscore the pivotal role of the stain S8 in fostering healthy soybean microbial communities and emphasize the significance of microbiota structure studies in unveiling potent biocontrol agents.

The Prostrate Spurge-isolated PGPB Endophytes, EP1-AS, and EP1-BM That Can Tolerate High Levels of Salinity and Heavy Metals and Allow Wheat Growth Under These Stressors

This research investigates the potential of two Plant Growth-Promoting Bacteria (PGPB) strains, EP1-AS and EP1-BM, isolated from the halophyte Euphorbia prostrata, to enhance plant growth and provide abiotic stress resilience. The study addresses the urgent need for sustainable agricultural practices in the face of challenges like soil salinization and heavy metal contamination. The investigation comprehensively analyzes the heavy metal and salt tolerance of the PGPB strains, revealing their potential applications in promoting plant growth under adverse environmental conditions. The research further explores the impact of these PGPB strains on wheat plants subjected to varying concentrations of heavy metals and salts. Results indicate that both PGPB strains, especially EP1-BM, exhibit significant tolerance to heavy metals and salt stress. EP1-BM demonstrates remarkable resilience even under high concentrations of these stressors. The study extends its findings to in vitro testing on wheat plants, revealing the positive influence of PGPB strains on germination, shoot length, and root length in the presence of salt and heavy metals. This research underscores the significance of understanding plant-microbe interactions, particularly in the context of promoting sustainable agriculture in challenging environments. The identified resilience of PGPB strains, especially EP1-BM, suggests their potential application as bio-remediators and plant growth promoters in soils affected by salinity and heavy metal stress. The promising results observed will be followed-up field trials. They will highlight the translational potential of these PGPB strains, offering a novel avenue for developing biofertilizer formulations with a cautious approach to safety concerns. Overall, this study contributes valuable insights into harnessing the untapped potential of resilient plants and their associated microbial communities for sustainable agriculture. It addresses key global challenges outlined by the United Nations Sustainable Development Goals.

Leaf Endophytes Relationship with Host Metabolome Expression in Tropical Gymnosperms.

Plant-microbe interactions play a pivotal role in shaping host fitness, especially concerning chemical defense mechanisms. In cycads, establishing direct correlations between specific endophytic microbes and the synthesis of highly toxic defensive phytochemicals has been challenging. Our research delves into the intricate relationship between plant-microbe associations and the variation of secondary metabolite production in two closely related Zamia species that grow in distinct habitats; terrestrial and epiphytic. Employing an integrated approach, we combined microbial metabarcoding, which characterize the leaf endophytic bacterial and fungal communities, with untargeted metabolomics to test if the relative abundances of specific microbial taxa in these two Zamia species were associated with different metabolome profiles. The two species studied shared approximately 90% of the metabolites spanning diverse biosynthetic pathways: alkaloids, amino acids, carbohydrates, fatty acids, polyketides, shikimates, phenylpropanoids, and terpenoids. Co-occurrence networks revealed positive associations among metabolites from different pathways, underscoring the complexity of their interactions. Our integrated analysis demonstrated to some degree that the intraspecific variation in metabolome profiles of the two host species was associated with the abundance of bacterial orders Acidobacteriales and Frankiales, as well as the fungal endophytes belonging to the orders Chaetothyriales, Glomerellales, Heliotiales, Hypocreales, and Sordariales. We further associate individual metabolic similarity with four specific fungal endophyte members of the core microbiota, but no specific bacterial taxa associations were identified. This study represents a pioneering investigation to characterize leaf endophytes and their association with metabolomes in tropical gymnosperms, laying the groundwork for deeper inquiries into this complex domain.

The chromosome level whole genome sequence and the seconary matabolism gene cluster prediction of Fusarium meridionale, the pathogen causing maize ear rot.

Fusarium meridionale is one of the pathogens causing maize ear rot, it produce bioactive secondary metabolites may threaten humans food safty, however, the production mechanism of the secondary metabolites and their interaction with maize ear remains poorly understood. To facilitate related studies, we sequenced and assembled the genome of F. meridionale strain JX18-4. The size of F. meridionale JX18-4 genome is 37.11 Mbp, include four nuclear chromosome contigs that consists of 11920 coding genes and one mitochondrial contig. 95.64% gene synteny collinearity was found between the assembly and the reference genomes F. graminearum strain PH-1. Compared to the sequences of seconary matabolism gene clusters sequences reported previously, the stain JX18-4 was predicted potential producing 8 clusters, including nivalenol, zearalenone, aurofusarin, fusarielin, fusaristatin A, fusarin, fusarubin and butenolide. This study aims to reveal the molecular mechanism of secondary metabolites producing, and the genomic information of JX18-4 will provide resources for the study of biological control mechanisms and plant-microbe interactions.

Role of rhizospheric microbial enzymes in plant growth promotion, antagonism, and sustainable agriculture: A review

Plant growth-promoting rhizobacteria (PGPR) offer eco-friendly alternatives to chemical fertilizers, promoting sustainable agriculture by enhancing soil fertility, reducing pathogens, and aiding in stress resistance. In agriculture, they play a crucial role in plant growth promotion through the production of agroactive compounds and extracellular enzymes to promote plant health and protection against phytopathogens. In the rhizosphere, diverse microbial interactions, including those with bacteria and fungi, influence plant health by production of antimicrobial compounds. The antagonism displayed by rhizobacteria plays a crucial role in shaping microbial communities and has potential applications in developing a natural and environmentally friendly approach to pest control. The rhizospheric microbes showcase their ecological importance and potential for biotechnological applications in the context of plant-microbe interactions. The extracellular enzymes produced by rhizospheric microbes like amylases, chitinases, glucanases, cellulases, proteases, and ACC deaminase contribute to plant processes and stress response emphasizing their importance in sustainable agriculture. Moreover, this review highlights the new paradigm including artificial intelligence (AI) in sustainable horticulture and agriculture as a harmonious interaction between ecological networks for promoting soil health and microbial diversity that leads to a more robust and self-regulating agricultural system for protecting the environment in the future. Overall, this review emphasizes microbial interactions and the role of rhizospheric microbial extracellular enzymes which is crucial for developing eco-friendly approaches to enhance crop production and soil health.

Omics approaches in understanding the benefits of plant-microbe interactions.

Plant-microbe interactions are pivotal for ecosystem dynamics and sustainable agriculture, and are influenced by various factors, such as host characteristics, environmental conditions, and human activities. Omics technologies, including genomics, transcriptomics, proteomics, and metabolomics, have revolutionized our understanding of these interactions. Genomics elucidates key genes, transcriptomics reveals gene expression dynamics, proteomics identifies essential proteins, and metabolomics profiles small molecules, thereby offering a holistic perspective. This review synthesizes diverse microbial-plant interactions, showcasing the application of omics in understanding mechanisms, such as nitrogen fixation, systemic resistance induction, mycorrhizal association, and pathogen-host interactions. Despite the challenges of data integration and ethical considerations, omics approaches promise advancements in precision intervention and resilient agricultural practices. Future research should address data integration challenges, enhance omics technology resolution, explore epigenomics, and understand plant-microbe dynamics under diverse conditions. In conclusion, omics technologies hold immense promise for optimizing agricultural strategies and fortifying resilient plant-microbe alliances, paving the way for sustainable agriculture and environmental stewardship.

Trichoderma spp. isolates stimulate rice seedling growth of Sertani 13 variety

Trichoderma has become one of the most studied filamentous fungi to be used as a greener and more sustainable solution for improving the production and growth of numerous crops, due to its capability to form symbiotic associations with plants. This study aimed to evaluate the effect of Trichoderma isolates obtained from the rhizosphere of organic rice fields in Sukabumi, Indonesia, in enhancing rice germination and seedling growth. A laboratory experiment used a completely randomized design consisting of seed treatments of 21 Trichoderma isolates (T1-T21) and a control treatment without Trichoderma (C). The inoculation was employed to elucidate any potential effects of Trichoderma isolates. Results showed that five isolates, i.e., T5, T7, T9, T10, and T14 stimulated the highest seedling vigor index, root and shoot length, and fresh weight and dry weight. These findings exhibited the potential of these five isolates as plant growth-promoting fungi to improve rice seedling growth and contribute to our understanding of the role of symbiotic fungi in sustainable rice crop production. Keywords: plant growth promoting fungi; seed treatment; plant-microbe interactions, symbiotic fungi

Seed-Coat Pigmentation Plays a Crucial Role in Partner Selection and N2 Fixation in Legume-Root-Microbe Associations in African Soils.

Legume-rhizobia symbiosis is the most important plant-microbe interaction in sustainable agriculture due to its ability to provide much needed N in cropping systems. This interaction is mediated by the mutual recognition of signaling molecules from the two partners, namely legumes and rhizobia. In legumes, these molecules are in the form of flavonoids and anthocyanins, which are responsible for the pigmentation of plant organs, such as seeds, flowers, fruits, and even leaves. Seed-coat pigmentation in legumes is a dominant factor influencing gene expression relating to N2 fixation and may be responsible for the different N2-fixing abilities observed among legume genotypes under field conditions in African soils. Common bean, cowpea, Kersting's groundnut, and Bambara groundnut landraces with black seed-coat color are reported to release higher concentrations of nod-gene-inducing flavonoids and anthocyanins compared with the Red and Cream landraces. Black seed-coat pigmentation is considered a biomarker for enhanced nodulation and N2 fixation in legumes. Cowpea, Bambara groundnut, and Kersting's bean with differing seed-coat colors are known to attract different soil rhizobia based on PCR-RFLP analysis of bacterial DNA. Even when seeds of the same legume with diverse seed-coat colors were planted together in one hole, the nodulating bradyrhizobia clustered differently in the PCR-RFLP dendrogram. Kersting's groundnut, Bambara groundnut, and cowpea with differing seed-coat colors were selectively nodulated by different bradyrhizobial species. The 16S rRNA amplicon sequencing also found significant selective influences of seed-coat pigmentation on microbial community structure in the rhizosphere of five Kersting's groundnut landraces. Seed-coat color therefore plays a dominant role in the selection of the bacterial partner in the legume-rhizobia symbiosis.

Impact of Rhizospheric Microbiome on Rice Cultivation.

The rhizosphere niche is extremely important for the overall growth and development of plants. Evidently, it is necessary to understand the complete mechanism of plant microbe interactions of the rhizosphere for sustainable and low input productivity. To meet the increasing global food demand, rice (Oryza sativa L.) agriculture seeks optimal conditions. The unique oxic-anoxic interface of rice-growing soil has invited divergent microbes with dynamic biogeochemical cycles. This review provides the systematic analysis of microbes associated with the major biogeochemical cycles with the aim to generate better management strategies of rhizospheric microbiome in the field of rice agriculture. For instance, several methanogenic and methanotrophic bacteria in the rice rhizosphere make an equilibrium for methane concentration in the environment. The carbon sequestration in paddy soil is again done through many rhizospheric microorganisms that can directly assimilate CO2 with their photoautotrophic mode of nutrition. Also the phosphate solubilizing microbes remain to be the most important keys for the PGPR activity of the paddy ecosystem. In addition, rhizospheric microbiome remain crucial in degradation and solubilization of organo-sulfur and insoluble inorganic sulfides which can be taken by the plants. Further, this review elucidates on the advantages of using metagenomic and metaproteomic approaches as an alternative of traditional approaches to understand the overall metabolic pathways operational in paddy-field. These knowledges are expected to open new possibilities for designing the balanced microbiome used as inoculum for intensive farming and will eventually lead to exert positive impacts on rice cultivation.

Timely symbiosis: circadian control of legume-rhizobia symbiosis.

Legumes house nitrogen-fixing endosymbiotic rhizobia in specialised polyploid cells within root nodules. This results in a mutualistic relationship whereby the plant host receives fixed nitrogen from the bacteria in exchange for dicarboxylic acids. This plant-microbe interaction requires the regulation of multiple metabolic and physiological processes in both the host and symbiont in order to achieve highly efficient symbiosis. Recent studies have showed that the success of symbiosis is influenced by the circadian clock of the plant host. Medicago and soybean plants with altered clock mechanisms showed compromised nodulation and reduced plant growth. Furthermore, transcriptomic analyses revealed that multiple genes with key roles in recruitment of rhizobia to plant roots, infection and nodule development were under circadian control, suggesting that appropriate timing of expression of these genes may be important for nodulation. There is also evidence for rhythmic gene expression of key nitrogen fixation genes in the rhizobium symbiont, and temporal coordination between nitrogen fixation in the bacterial symbiont and nitrogen assimilation in the plant host may be important for successful symbiosis. Understanding of how circadian regulation impacts on nodule establishment and function will identify key plant-rhizobial connections and regulators that could be targeted to increase the efficiency of this relationship.

Implications of bacteria‒bacteria interactions within the plant microbiota for plant health and productivity.

Crop production currently relies on the widespread use of agrochemicals to ensure food security. This practice is considered unsustainable, yet has no viable alternative at present. The plant microbiota can fulfil various functions for its host, some of which could be the basis for developing sustainable protection and fertilization strategies for plants without relying on chemicals. To harness such functions, a detailed understanding of plant‒microbe and microbe‒microbe interactions is necessary. Among interactions within the plant microbiota, those between bacteria are the most common ones; they are not only of ecological importance but also essential for maintaining the health and productivity of the host plants. This review focuses on recent literature in this field and highlights various consequences of bacteria‒bacteria interactions under different agricultural settings. In addition, the molecular and genetic backgrounds of bacteria that facilitate such interactions are emphasized. Representative examples of commonly found bacterial metabolites with bioactive properties, as well as their modes of action, are given. Integrating our understanding of various binary interactions into complex models that encompass the entire microbiota will benefit future developments in agriculture and beyond, which could be further facilitated by artificial intelligence-based technologies.

Unraveling Microbial Strategies: Targeting the Plant Ubiquitin - Proteasome Pathway

The Ubiquitin-Proteasome System (UPS) stands as a central regulator in the intricate web of plant immune responses, orchestrating the turnover of key immune components. Through the UPS, plants finely tune their defenses, from the initial recognition of pathogens to the activation of defense strategies. Immune receptors, signaling components associated with defense hormones, and transcription factors are among the targets modulated by the UPS, shaping both PAMP-triggered immunity (PTI) and effector-triggered immunity (ETI). However, pathogens have evolved sophisticated strategies to manipulate the UPS for their benefit. Fungi, bacteria, and viruses deploy effector proteins to exploit the UPS, either by promoting the degradation of host defense elements or by interfering with UPS-mediated processes. This intricate interplay underscores the pivotal role of the UPS in plant-pathogen dynamics, presenting both challenges and opportunities for understanding and manipulating plant immunity. Unraveling the complexities of UPS regulation and pathogen exploitation thereof is crucial for advancing our knowledge of plant-microbe interactions and developing strategies for sustainable disease management in agriculture.

Effects of Graphene Oxide on Endophytic Bacteria Population Characteristics in Plants from Soils Contaminated by Polycyclic Aromatic Hydrocarbons.

Environmental pollution stands as one of the significant global challenges we face today. Polycyclic aromatic hydrocarbons (PAHs), a class of stubborn organic pollutants, have long been a focal point of bioremediation research. This study aims to explore the impact and mechanisms of graphene oxide (GO) on the phytoremediation effectiveness of PAHs. The results underscore the significant efficacy of GO in accelerating the degradation of PAHs. Additionally, the introduction of GO altered the diversity and community structure of endophytic bacteria within the roots, particularly those genera with potential for PAH degradation. Through LEfSe analysis and correlation studies, we identified specific symbiotic bacteria, such as Mycobacterium, Microbacterium, Flavobacterium, Sphingomonas, Devosia, Bacillus, and Streptomyces, which coexist and interact under the influence of GO, synergistically degrading PAHs. These bacteria may serve as key biological markers in the PAH degradation process. These findings provide new theoretical and practical foundations for the application of nanomaterials in plant-based remediation of polluted soils and showcase the immense potential of plant-microbe interactions in environmental restoration.

Editorial to Special Issue "Plant-Microbe Interactions"

Editorial to Special Issue "Plant-Microbe Interactions"

Genomic fingerprints of the world's soil ecosystems.

Despite the explosion of soil metagenomic data, we lack a synthesized understanding of patterns in the distribution and functions of soil microorganisms. These patterns are critical to predictions of soil microbiome responses to climate change and resulting feedbacks that regulate greenhouse gas release from soils. To address this gap, we assay 1,512 manually curated soil metagenomes using complementary annotation databases, read-based taxonomy, and machine learning to extract multidimensional genomic fingerprints of global soil microbiomes. Our objective is to uncover novel biogeographical patterns of soil microbiomes across environmental factors and ecological biomes with high molecular resolution. We reveal shifts in the potential for (i) microbial nutrient acquisition across pH gradients; (ii) stress-, transport-, and redox-based processes across changes in soil bulk density; and (iii) greenhouse gas emissions across biomes. We also use an unsupervised approach to reveal a collection of soils with distinct genomic signatures, characterized by coordinated changes in soil organic carbon, nitrogen, and cation exchange capacity and in bulk density and clay content that may ultimately reflect soil environments with high microbial activity. Genomic fingerprints for these soils highlight the importance of resource scavenging, plant-microbe interactions, fungi, and heterotrophic metabolisms. Across all analyses, we observed phylogenetic coherence in soil microbiomes-more closely related microorganisms tended to move congruently in response to soil factors. Collectively, the genomic fingerprints uncovered here present a basis for global patterns in the microbial mechanisms underlying soil biogeochemistry and help beget tractable microbial reaction networks for incorporation into process-based models of soil carbon and nutrient cycling.IMPORTANCEWe address a critical gap in our understanding of soil microorganisms and their functions, which have a profound impact on our environment. We analyzed 1,512 global soils with advanced analytics to create detailed genetic profiles (fingerprints) of soil microbiomes. Our work reveals novel patterns in how microorganisms are distributed across different soil environments. For instance, we discovered shifts in microbial potential to acquire nutrients in relation to soil acidity, as well as changes in stress responses and potential greenhouse gas emissions linked to soil structure. We also identified soils with putative high activity that had unique genomic characteristics surrounding resource acquisition, plant-microbe interactions, and fungal activity. Finally, we observed that closely related microorganisms tend to respond in similar ways to changes in their surroundings. Our work is a significant step toward comprehending the intricate world of soil microorganisms and its role in the global climate.

Plant-Microbe Interaction in Improving Zinc Nutrition in Rice: A Review

Zinc is an essential micro-nutrient that affects metabolic activities, including growth and cell proliferation in all living organisms. Zinc deficiency in agricultural soil has been increasing at an accelerated rate all over the world, leading to its deficiency in plants as well as humans. Zinc solubilising bacteria (ZSB) solubilise complex zinc in soil into plant absorbable compounds through several mechanisms such as the production of acid, chelating compounds, protons etc. further improving its bioavailability in plants and humans. Improving zinc nutrition through microbes is an effective measure to overcome its deficiency. ZSB with Plant Growth Promoting (PGP) traits can be an additional advantage as along with increasing zinc amount in plant it would also promote overall growth of plants through PGP traits and can act as a biocontrol agent against several crop pathogens. In this review we attempt to study the significance of zinc; status and deficiency of zinc in Indian soil and to understand how zinc solubilizing bacteria can prove to be an effective measure to increase zinc content in plants and overcome its deficiency.

AMF symbiosis drives the rhizosphere microbiome to synergistically improve herbage growth in saline–alkaline soils

AbstractPlant–microbe interactions are essential in shaping plant performance and overall ecosystem functioning. However, the regulatory mechanisms underlying plant–microbe interactions mediated by mycorrhizal symbiosis in saline–alkaline soils are still not fully understood. Here, we aimed to clarify the synergistic regulatory mechanism through which arbuscular mycorrhizal fungi (AMF) symbiosis drives the rhizosphere microbiome to improve perennial herbage growth in saline–alkaline soils and evaluate phytoremediation efficiency. This study revealed that Funneliformis mosseae inoculation (i) strongly promoted the growth of all three herbage species (with values ranging from 21.62% to 233.33%), Na+ accumulation in plants (with values ranging from 24.63% to 188.89%), and decreased soil electrical conductivity (with values ranging from 7.68% to 12.87%), potentially suggesting improved phytoremediation efficiency with AMF symbiosis; (ii) increased nutritional content and decreased C:P and N:P ratios (with values ranging from 27.20% to 92.87%) and improved K+/Na+ and P/Na+ ratios (with values ranging from 2.60% to 302.96%); (iii) increased the abundance of some beneficial bacterial taxa and strengthened the significant strong relationships among most of these bacteria and plant biomass, ion homeostasis as well as stoichiometric ratio constants, and AMF inoculation treatments also consisted the higher proportion of differential genera significantly correlated with these plant factors as well as plant nutrient contents, potentially reflecting that AMF mediated the enrichment process of beneficial bacterial taxa and may strength functional interaction between plant and bacterial taxa, which may be importance for the enhancement of saline–alkaline tolerance of plants; and (iv) enhanced stability of the rhizosphere bacterial community and complexity of interaction networks, and the related indictors also established significant correlations with plant/soil factors, suggesting that the improvement of stability and functional complexity driven by AMF may also be beneficial for enhancing phytoremediation efficiency. These findings indicate that AMF inoculation plays its own beneficial role by simultaneously activating the potential of beneficial rhizosphere bacterial taxa and that their synergistic interaction is more beneficial for enhancing plant growth in salt‐affected soils and enhancing phytoremediation efficiency. This study helps to elucidate the underlying mechanisms through which AMF‐mediated rhizosphere bacterial community improve plant growth and tolerance to saline–alkaline stresses, and provides evidence that effective ecological restoration of saline–alkaline degraded grasslands can be achieved via the use of mycorrhizal symbiosis herbage.

Comparing the Potential of Silicon Nanoparticles and Conventional Silicon for Salinity Stress Alleviation in Soybean (Glycine max L.): Growth and Physiological Traits and Rhizosphere/Endophytic Bacterial Communities.

In this study, 20-day-old soybean plants were watered with 100 mL of 100 mM NaCl solution and sprayed with silica nanoparticles (SiO2 NPs) or potassium silicate every 3 days over 15 days, with a final dosage of 12 mg of SiO2 per plant. We assessed the alterations in the plant's growth and physiological traits, and the responses of bacterial microbiome within the leaf endosphere, rhizosphere, and root endosphere. The result showed that the type of silicon did not significantly impact most of the plant parameters. However, the bacterial communities within the leaf and root endospheres had a stronger response to SiO2 NPs treatment, showing enrichment of 24 and 13 microbial taxa, respectively, compared with the silicate treatment, which led to the enrichment of 9 and 8 taxonomic taxa, respectively. The rhizosphere bacterial communities were less sensitive to SiO2 NPs, enriching only 2 microbial clades, compared to the 8 clades enriched by silicate treatment. Furthermore, SiO2 NPs treatment enriched beneficial genera, such as Pseudomonas, Bacillus, and Variovorax in the leaf and root endosphere, likely enhancing plant growth and salinity stress resistance. These findings highlight the potential of SiO2 NPs for foliar application in sustainable farming by enhancing plant-microbe interactions to improve salinity tolerance.

Methylotrophic bacteria from rice paddy soils: mineral-nitrogen-utilizing isolates richness in bulk soil and rhizosphere.

Methanol, the second most abundant volatile organic compound, primarily released from plants, is a major culprit disturbing atmospheric chemistry. Interestingly, ubiquitously found methanol-utilizing bacteria, play a vital role in mitigating atmospheric methanol effects. Despite being extensively characterized, the effect of nitrogen sources on the richness of methanol-utilizers in the bulk soil and rhizosphere is largely unknown. Therefore, the current study was planned to isolate, characterize and explore the richness of cultivable methylotrophs from the bulk soil and rhizosphere of a paddy field using media with varying nitrogen sources. Our data revealed that more genera of methylotrophs, including Methylobacterium, Ancylobacter, Achromobacter, Xanthobacter, Moraxella, and Klebsiella were enriched with the nitrate-based medium compared to only two genera, Hyphomicrobium and Methylobacterium, enriched with the ammonium-based medium. The richness of methylotrophic bacteria also differed substantially in the bulk soil as compared to the rhizosphere. Growth characterization revealed that majority of the newly isolated methanol-utilizing strains in this study exhibited better growth at 37°C instead of 30 or 45°C. Moreover, Hyphomicrobium sp. FSA2 was the only strain capable of utilizing methanol even at elevated temperature 45°C, showing its adaptability to a wide range of temperatures. Differential carbon substrate utilization profiling revealed the facultative nature of all isolated methanol-utilizer strains with Xanthobacter sp. TS3, being an important methanol-utilizer capable of degrading toxic compounds such as acetone and ethylene glycol. Overall, our study suggests the role of nutrients and plant-microbial interaction in shaping the composition of methanol-utilizers in terrestrial environment.

Endophytic Microbial Diversity, Heavy Metal Accumulation, and Antimicrobial Properties of Avicennia marina from Saudi Arabia

This study comprehensively examined the Avicennia marina plant, a key species along the Red Sea coast of the Saudi Arabian Kingdom, focusing on its microbial, biochemical, and ecological aspects. Specimens, including leaves, seeds, and seedlings of Avicennia marina plant, were collected during the summer of 2021 from two distinct mangrove-abundant regions in Yanbu Governorate, Kingdom of Saudi Arabia. Analysis of the plant revealed significant heavy metal concentrations in its sediment, leaves, and seeds, with the sediment from region 1 recording metals such as Cr (40.202 ppm) and Se (30.522 ppm). Additionally, the plant’s extracts exhibited notable antimicrobial properties, inhibiting growth of several pathogenic bacteria, with ethyl acetate extracts from leaves being especially potent against strains like P. aeruginosa and S. aureus. Moreover, from the leaves collected in the Yanbu region, 10 unique endophytic bacterial species were identified. Utilizing genomic analysis tools, two of these bacteria were closely characterized, revealing more than 99% similarity to known bacterial species; Mixta and Cytobacillus species, emphasizing the microbial diversity within the mangrove leaves. In sum, Avicennia marina emerges as ecologically significant, with potential implications for bio-remediation and antimicrobial applications, and as a reservoir of diverse microbial species. With mounting global challenges, such as climate change, understanding these microbial-plant interactions is pivotal for both conservation and biotechnological pursuits in the future.