Tobacco fields have been continuously cropped for several years because of the high demand for tobacco leaves and limited land resources. To explore the effects of continuous cropping on tobacco growth and soil microecological community structure, this study compared the agronomic traits and physiological resistance characteristics of tobacco plants grown in noncontinuous cropping soil and soil with different continuous cropping years. High-throughput sequencing technology was used to analyze and predict the microbial community structure and functional gene variation patterns of tobacco soil. The results demonstrated that continuous cropping significantly impacted the average height, leaf area, and stem diameter of tobacco plants, as well as the contents of malondialdehyde, hydrogen peroxide, and glutathione in tobacco leaves that were continuously cropped. The relative abundances of Proteobacteria, Bacteroidetes, and Gemmatimonadetes in tobacco soil decreased with an increase in continuous cropping years, while relative abundance of Acidobacteria increased. The biodiversity index of tobacco soil samples showed a decreasing trend with an increase in continuous cropping years, with the sample with the longest continuous cropping year (33 years) having the lowest biodiversity index. Prediction of the potential functions of soil samples with different continuous cropping years revealed that the Z-scores of each pathway in noncontinuous cropping soil samples ranged from 1.12 to 0.078, while those in 33-year continuous cropping samples decreased from −0.10 to −1.41. Our findings indicate that continuous cropping has negative impacts on soil health and microecology, leading to a reduction in beneficial microbial population and microbial diversity.
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