Plant Hormone Homeostasis Research Articles

Root-sourced H2O2 is essential for maintaining jasmonic acid and Na+/K+ homeostasis to delay leaf senescence during salt stress in Paspalum vaginatum

Improving salt tolerance and mitigating senescence in the presence of high salinity are crucial for sustaining agricultural productivity. Previous research has demonstrated that hydrogen peroxide (H2O2), specifically H2O2 derived from roots and mediated by the respiratory burst oxidase homolog (NADPH), plays a significant role in regulating ion and plant hormone homeostasis in glycophytic plants, such as Arabidopsis. However, the extent to which root-derived H2O2 fulfils similar functions in halophytic plants remains uncertain. Therefore, our study aimed to explore the potential contribution of root-sourced H2O2 in delaying leaf senescence induced by high salinity, utilizing seashore paspalum as a model halophytic plant. The application of the NADPH-oxidase inhibitor DPI, coupled with a series of leaf senescence analyses, we revealed that root-derived H2O2 significantly retards salt-induced leaf senescence. Furthermore, through the application of hormone analysis, lipidomics, ionomics, Non-invasive Micro-test Technology (NMT), and transcriptomics, we established that NADPH-dependent H2O2 induced by salt stress in the roots was indispensable for maintaining the balance of the aging hormone, jasmonic acid (JA), and sodium ion homeostasis within this halophytic plant. Finally, by utilizing AtrbohD Arabidopsis mutants and virus-induced gene silencing (VIGs) in Paspalum vaginatum, we demonstrated the pivotal role played by root-sourced H2O2 in upholding JA homeostasis and regulating JA-triggered leaf senescence in P. vaginatum. This study offers novel insights into the mechanisms that govern plant leaf senescence and its response to salinity-induced stress.

The use of hydromulching increases yield and quality of drought-stressed artichokes (Cynara cardunculus subsp. scolymus L. (Heigi)) by improving soil properties and plant hormone homeostasis

There exist many research papers which pointed out the positive effects of using the mulching technique in stressful conditions, showing crop productivity and physicochemical quality improvement of the product. We hypothesized that a novel organic liquid mulching formulations (hydromulching) can be used in sustainable agricultural production under drought stress through both their direct influence on physicochemical and biological soil properties as well as by their effect on plant hormonal balance leading to the improvement of crop yield and quality. Artichoke plants were grown on bare soil (BS) or mulched with traditional polyethylene (PE) or with three different types of ecological hydromulching treatments obtained from recycled additives, namely: substrate used for mushroom cultivation (MS), rice hulls (RH) and wheat straw (WS); and were subjected to optimal (100% ETc) and reduced (70% ETc) irrigation regimes. Under water limitation, soil organic matter and carbon and mineral soil concentrations increased in the hydromulched soils (by 60% on average). Mulched treatments produced the highest crop yield (by 40% on average) attributed to increased artichoke head fresh weight, giving rise to the improvement of the important physical quality parameters in artichoke: color, firmness, and size. Furthermore, hydromulched treatments induced higher content of mineral nutrients in artichoke heads, while sugar concentrations were superior in non-mulched soil due to a major exposure to water stress. This may be related to the diminished carbohydrate metabolism activity under drought stress, including notable changes in the hormonal balance. The crosstalk of growth-promoting hormones (cytokinins) with the stress-related hormone factors (ethylene precursor 1-aminocyclopropane-1-carboxylic acid) has been shown to regulate adaptive responses such as sugar osmoregulation in artichoke heads under drought stress. Altogether, these results demonstrate that hydromulching is a sustainable alternative to plastic films to cope with drought stress by improving yield and physical quality characteristics of artichoke heads and maintaining their chemical and nutritional quality over bare soil.

Integrative transcriptome and metabolome revealed the molecular mechanism of Bacillus megaterium BT22-mediated growth promotion in Arabidopsis thaliana

Plant growth-promoting rhizobacteria (PGPR) can promote plant growth and protect plants from pathogens, which contributes to sustainable agricultural development. Several studies have reported their beneficial characteristics in facilitating plant growth and development and enhancing plant stress resistance through different mechanisms. However, there is still a challenge to study the molecular mechanism of plant response to PGPR. We integrated the transcriptome and metabolome of Arabidopsis thaliana (Arabidopsis) to understand its responses to the inoculation with an isolated PGPR strain (BT22) of Bacillus megaterium. Fresh shoot weight, dry shoot weight and leaf number of Arabidopsis were increased by BT22 treatment, showing a positive growth-promoting effect. According multi-omics analysis, 878 differentially expressed genes (296 up-regulated, 582 down-regulated) and 139 differentially expressed metabolites (66 up-regulated, 73 down-regulated) response to BT22 inoculation. GO enrichment results indicate that the up-regulated genes mainly enriched in the regulation of growth and auxin response pathways. In contrast, the down-regulated genes mainly enriched in wounding response, jasmonic acid and ethylene pathways. BT22 inoculation regulated plant hormone signal transduction of Arabidopsis, including auxin and cytokinin response genes AUX/IAA, SAUR, and A-ARR related to cell enlargement and cell division. The contents of nine flavonoids and seven phenylpropanoid metabolites were increased, which help to induce systemic resistance in plants. These results suggest that BT22 promoted Arabidopsis growth by regulating plant hormone homeostasis and inducing metabolome reprogramming.

Bacillus velezensis strain B26 modulates the inflorescence and root architecture of Brachypodium distachyon via hormone homeostasis

Plant growth-promoting rhizobacteria (PGPR) influence plant health. However, the genotypic variations in host organisms affect their response to PGPR. To understand the genotypic effect, we screened four diverse B. distachyon genotypes at varying growth stages for their ability to be colonized by B. velezensis strain B26. We reasoned that B26 may have an impact on the phenological growth stages of B. distachyon genotypes. Phenotypic data suggested the role of B26 in increasing the number of awns and root weight in wild type genotypes and overexpressing transgenic lines. Thus, we characterized the expression patterns of flowering pathway genes in inoculated plants and found that strain B26 modulates the transcript abundance of flowering genes. An increased root volume of inoculated plants was estimated by CT-scanning which suggests the role of B26 in altering the root architecture. B26 also modulated plant hormone homeostasis. A differential response was observed in the transcript abundance of auxin and gibberellins biosynthesis genes in inoculated roots. Our results reveal that B. distachyon plant genotype is an essential determinant of whether a PGPR provides benefit or harm to the host and shed new insight into the involvement of B. velezensis in the expression of flowering genes.

Activation of the VQ Motif-Containing Protein Gene VQ28 Compromised Nonhost Resistance of Arabidopsis thaliana to Phytophthora Pathogens.

Nonhost resistance refers to resistance of a plant species to all genetic variants of a non-adapted pathogen. Such resistance has the potential to become broad-spectrum and durable crop disease resistance. We previously employed Arabidopsis thaliana and a forward genetics approach to identify plant mutants susceptible to the nonhost pathogen Phytophthora sojae, which resulted in identification of the T-DNA insertion mutant esp1 (enhanced susceptibility to Phytophthora). In this study, we report the identification of VQ motif-containing protein 28 (VQ28), whose expression was highly up-regulated in the mutant esp1. Stable transgenic A. thaliana plants constitutively overexpressing VQ28 compromised nonhost resistance (NHR) against P. sojae and P. infestans, and supported increased infection of P. parasitica. Transcriptomic analysis showed that overexpression of VQ28 resulted in six differentially expressed genes (DEGs) that are involved in the response to abscisic acid (ABA). High performance liquid chromatography-mass spectrometry (HPLC-MS) detection showed that the contents of endogenous ABA, salicylic acid (SA), and jasmonate (JA) were enriched in VQ28 overexpression lines. These findings suggest that overexpression of VQ28 may lead to an imbalance in plant hormone homeostasis. Furthermore, transient overexpression of VQ28 in Nicotiana benthamiana rendered plants more susceptible to Phytophthora pathogens. Deletion mutant analysis showed that the C-terminus and VQ-motif were essential for plant susceptibility. Taken together, our results suggest that VQ28 negatively regulates plant NHR to Phytophthora pathogens.

Function of hydroxycinnamoyl spermidines in seedling growth of Arabidopsis.

Hydroxycinnamic acid amides are involved in various developmental processes as well as in biotic and abiotic stress responses. Among them, the presence of spermidine derivatives, such as N1,N8-di(coumaroyl)-spermidine and N1,N8-di(sinapoyl)-spermidine, and their biosynthetic genes have been reported in Arabidopsis, but their functions in plants are still unknown. We chemically synthesized the above-mentioned spermidine derivatives to assess their physiological functions in Arabidopsis. We evaluated the growth and development of chemically treated Arabidopsis and demonstrated that these compounds inhibited seed germination, hypocotyl elongation, and primary root growth, which could be due to modulation of plant hormone homeostasis and signaling. The results suggest that these compounds are regulatory metabolites that modulate plant growth and development.

Manipulation of auxin signalling by plant viruses.

Compatible plant–virus interactions result in dramatic changes of the plant transcriptome and morphogenesis, and are often associated with rapid alterations in plant hormone homeostasis and signalling. Auxin controls many aspects of plant organogenesis, development, and growth; therefore, plants can rapidly perceive and respond to changes in the cellular auxin levels. Auxin signalling is a tightly controlled process and, hence, is highly vulnerable to changes in the mRNA and protein levels of its components. There are several core nuclear components of auxin signalling. In the nucleus, the interaction of auxin response factors (ARFs) and auxin/indole acetic acid (Aux/IAA) proteins is essential for the control of auxin‐regulated pathways. Aux/IAA proteins are negative regulators, whereas ARFs are positive regulators of the auxin response. The interplay between both is essential for the transcriptional regulation of auxin‐responsive genes, which primarily regulate developmental processes but also modulate the plant immune system. Recent studies suggest that plant viruses belonging to different families have developed various strategies to disrupt auxin signalling, namely by (a) changing the subcellular localization of Aux/IAAs, (b) preventing degradation of Aux/IAAs by stabilization, or (c) inhibiting the transcriptional activity of ARFs. These interactions perturb auxin signalling and experimental evidence from various studies highlights their importance for virus replication, systemic movement, interaction with vectors for efficient transmission, and symptom development. In this microreview, we summarize and discuss the current knowledge on the interaction of plant viruses with auxin signalling components of their hosts.

Flasher, a novel mutation in a glucosinolate modifying enzyme, conditions changes in plant architecture and hormone homeostasis.

Meristem function is underpinned by numerous genes that affect hormone levels, ultimately controlling phyllotaxy, the transition to flowering and general growth properties. Class I KNOX genes are major contributors to this process, promoting cytokinin biosynthesis but repressing gibberellin production to condition a replication competent state. We identified a suppressor mutant of the KNOX1 mutant brevipedicellus (bp) that we termed flasher (fsh), which promotes stem and pedicel elongation, suppresses early senescence, and negatively affects reproductive development. Map-based cloning and complementation tests revealed that fsh is due to an E40K change in the flavin monooxygenase GS-OX5, a gene encoding a glucosinolate (GSL) modifying enzyme. In vitro enzymatic assays revealed that fsh poorly converts substrate to product, yet the levels of several GSLs are higher in the suppressor line, implicating FSH in feedback control of GSL flux. FSH is expressed predominantly in the vasculature in patterns that do not significantly overlap those of BP, implying a non-cell autonomous mode of meristem control via one or more GSL metabolites. Hormone analyses revealed that cytokinin levels are low in bp, but fsh restores cytokinin levels to near normal by activating cytokinin biosynthesis genes. In addition, jasmonate levels in the fsh suppressor are significantly lower than in bp, which is likely due to elevated expression of JA inactivating genes. These observations suggest the involvement of the GSL pathway in generating one or more negative effectors of growth that influence inflorescence architecture and fecundity by altering the balance of hormonal regulators.

Transcriptome analysis reveals regulatory effects of exogenous gibberellin on locule number in tomato

The size and shape of tomato (Solanum lycopersicum L.) fruit are determined by locule number. Gibberellin (GA) can increase locule number in tomato, but the underlying molecular mechanism is unclear. Therefore, in this study, multi-locule ‘MLK1’ tomato seedlings with two to three true leaves (pre-flower bud differentiation) were sprayed with GA1, GA3, GA4, GA7, PAC (paclobutrazol; an inhibitor of GA biosynthesis) and H2O, as a control. We found that GA4 resulted in was the most significant increase in tomato locule number among all bioactive GAs, while PAC decreased the locule number. We analyzed the change in locule number by RNA-seq, quantitative real-time PCR and ultra-performance liquid chromatography–tandem mass spectrometry. The categories ‘Phenylpropanoid biosynthesis’, ‘Plant hormone signal transduction’, and ‘Diterpenoid biosynthesis’ were considerably activated after spraying with GA4. Additionally, indole-3-acetic acid (IAA) content significantly increased and trans-Zeatin-riboside (tZ) content significantly reduced after exogenous GA4 application. We conclude that exogenous GA4 application changed the dynamic balance of hormones in the tomato shoot apex. Furthermore, 53 differentially expressed transcription factors were identified in tomato upon exogenous GA4 treatment during floral bud differentiation, including, YABBYs, TCP, NAC, and ARR (some directly regulate lateral organ development). Our results provide novel insights into how exogenous GA4 affects plant hormone homeostasis in the tomato shoot apex and the underlying mechanism of locule number regulation by GA4 in tomato.

Mepiquat chloride promotes cotton lateral root formation by modulating plant hormone homeostasis

BackgroundMepiquat chloride (MC), a plant growth regulator, enhances root growth by promoting lateral root formation in cotton. However, the underlying molecular mechanisms of this phenomenon is still unknown.MethodsIn this study, we used 10 cotton (Gossypium hirsutum Linn.) cultivars to perform a seed treatment with MC to investigate lateral root formation, and selected a MC sensitive cotton cultivar for dynamic monitor of root growth and transcriptome analysis during lateral root development upon MC seed treatment.ResultsThe results showed that MC treated seeds promotes the lateral root formation in a dosage-depended manner and the effective promotion region is within 5 cm from the base of primary root. MC treated seeds induce endogenous auxin level by altering gene expression of both gibberellin (GA) biosynthesis and signaling and abscisic acid (ABA) signaling. Meanwhile, MC treated seeds differentially express genes involved in indole acetic acid (IAA) synthesis and transport. Furthermore, MC-induced IAA regulates the expression of genes related to cell cycle and division for lateral root development.ConclusionsOur data suggest that MC orchestrates GA and ABA metabolism and signaling, which further regulates auxin biosynthesis, transport, and signaling to promote the cell division responsible for lateral root formation.

Effect of low-dose, repeated exposure of contaminants of emerging concern on plant development and hormone homeostasis

Treated wastewater is increasingly used to meet agriculture's water needs; however, treated wastewater contains numerous contaminants of emerging concern (CECs). With exposure and uptake of CECs, phytotoxicity and health of crop plants is of concern, but is poorly understood. This study evaluated the effect of low-dose, chronic exposure to a mixture of 10 CECs, including 4 antibiotics, 3 anti-inflammatory drugs, 1 antiepileptic, 1 beta-blocker, and 1 antimicrobial, on lettuce (Lactuca sativa) and cucumber (Cucumis sativa L.) plants. The CEC mixture was added in nutrient media at 1 to 20X of their typical levels in treated wastewater effluents. Biological endpoints including germination, growth, phytohormone homeostasis, and CEC bioaccumulation were determined. Exposure to the CEC mixture did not affect the germination rate of lettuce seeds, but stimulated root elongation and increased the root-to-shoot biomass ratio during a 7 d cultivation. A dose-dependent decrease in biomass was observed in cucumber seedling after a 30 d exposure, with the highest rate CEC treatment resulting in decreases of 51.2 ± 20.9, 26.3 ± 34.1, and 33.2 ± 41.7% in the below-ground, above-ground, and total biomass, respectively. Levels of abscisic acid were significantly elevated (p < 0.05) in the leaves, but decreased (p < 0.05) in the roots. The dose-response of auxin was characterized by a hormesis effect. A significant 6-fold increase in the stem auxin level was observed at the 1X CEC rate, followed by a decrease to 2-fold the control at the 20X rate. Leaf auxin concentrations also significantly increased at the 1X CEC rate to 16-fold, followed by a decrease at the highest CEC rate. The results of this study suggeste that chronic exposure to low levels of CEC mixtures may compromise the fitness of plants, and the impairments are underlined by alterations in hormone balances.

Production and Role of Hormones During Interaction of Fusarium Species With Maize (Zea mays L.) Seedlings.

It has long been known that hormones affect the interaction of a phytopathogen with its host plant. The pathogen can cause changes in plant hormone homeostasis directly by affecting biosynthesis or metabolism in the plant or by synthesizing and secreting the hormone itself. We previously demonstrated that pathogenic fungi of the Fusarium species complex are able to produce three major types of hormones: auxins, cytokinins, and gibberellins. In this work, we explore changes in the levels of these hormones in maize and mango plant tissues infected with Fusarium. The ability to produce individual phytohormones varies significantly across Fusarium species and such differences likely impact host specificity inducing the unique responses noted in planta during infection. For example, the production of gibberellins by F. fujikuroi leads to elongated rice stalks and the suppression of gibberellin biosynthesis in plant tissue. Although all Fusarium species are able to synthesize auxin, sometimes by multiple pathways, the ratio of its free form and conjugates in infected tissue is affected more than the total amount produced. The recently characterized unique pathway for cytokinin de novo synthesis in Fusarium appears silenced or non-functional in all studied species during plant infection. Despite this, a large increase in cytokinin levels was detected in F. mangiferae infected plants, caused likely by the up-regulation of plant genes responsible for their biosynthesis. Thus, the accumulation of active cytokinins may contribute to mango malformation of the reproductive organs upon infection of mango trees. Together, our findings provide insight into the complex role fungal and plant derived hormones play in the fungal–plant interactions.

Heterodera schachtii Tyrosinase-like protein - a novel nematode effector modulating plant hormone homeostasis

The beet cyst nematode Heterodera schachtii causes major yield losses in sugar beet. Understanding the interaction between H. schachtii and its host plant is important for developing a sustainable management system. Nematode effectors play a crucial role in initializing and sustaining successful parasitism. In our study, we identified a gene (Hs-Tyr) encoding a tyrosinase functional domain (PF00264). We describe Hs-Tyr as a novel nematode effector. Hs-Tyr is localized in the nematode esophageal gland. Up-regulation of its expression coincided with the parasitic developmental stages of the nematode. Silencing Hs-Tyr by RNA interference made the treated nematodes less virulent. When RNAi-treated nematodes succeeded in infecting the plant, developing females and their associated syncytial nurse cells were significantly smaller than in control plants. Ectopically expressing the Hs-Tyr effector in Arabidopsis increased plant susceptibility to H. schachtii, but not to the root-knot nematode Meloidogyne incognita. Interestingly, Hs-Tyr in the plant promoted plant growth and changed the root architecture. Additionally, the expression of Hs-Tyr in Arabidopsis caused changes in the homeostasis of several plant hormones especially auxin and the ethylene precursor aminocyclopropane-carboxylic acid.

Plant Hormone Homeostasis, Signaling, and Function during Adventitious Root Formation in Cuttings.

Adventitious root (AR) formation in cuttings is a multiphase developmental process, resulting from wounding at the cutting site and isolation from the resource and signal network of the whole plant. Though, promotive effects of auxins are widely used for clonal plant propagation, the regulation and function of plant hormones and their intricate signaling networks during AR formation in cuttings are poorly understood. In this focused review, we discuss our recent publications on the involvement of polar auxin transport (PAT) and transcriptional regulation of auxin and ethylene action during AR formation in petunia cuttings in a broad context. Integrating new findings on cuttings of other plant species and general models on plant hormone networks, a model on the regulation and function of auxin, ethylene, and jasmonate in AR formation of cuttings is presented. PAT and cutting off from the basipetal auxin drain are considered as initial principles generating early accumulation of IAA in the rooting zone. This is expected to trigger a self-regulatory process of auxin canalization and maximization to responding target cells, there inducing the program of AR formation. Regulation of auxin homeostasis via auxin influx and efflux carriers, GH3 proteins and peroxidases, of flavonoid metabolism, and of auxin signaling via AUX/IAA proteins, TOPLESS, ARFs, and SAUR-like proteins are postulated as key processes determining the different phases of AR formation. NO and H2O2 mediate auxin signaling via the cGMP and MAPK cascades. Transcription factors of the GRAS-, AP2/ERF-, and WOX-families link auxin signaling to cell fate specification. Cyclin-mediated governing of the cell cycle, modifications of sugar metabolism and microtubule and cell wall remodeling are considered as important implementation processes of auxin function. Induced by the initial wounding and other abiotic stress factors, up-regulation of ethylene biosynthesis, and signaling via ERFs and early accumulation of jasmonic acid stimulate AR formation, while both pathways are linked to auxin. Future research on the function of candidate genes should consider their tissue-specific role and regulation by environmental factors. Furthermore, the whole cutting should be regarded as a system of physiological units with diverse functions specifically responding to the environment and determining the rooting response.

New kid on the block – the clubroot pathogen genome moves the plasmodiophorids into the genomic era

Plasmodiophora brassicae causes clubroot on cruciferous plants and causes worldwide huge economical losses on important Brassica crops. P. brassicae infection produces large root galls, the clubroots, which can also affect the upper plant parts by reduced water and nutrient uptake and redirection of assimilates from leaves to roots. P. brassicae is an obligate biotrophic protist in the plasmodiophorids within the eukaryote supergroup of Rhizaria and is unrelated to other known plant pathogens. Plasmodiophorids can be parasites of plants and oomycetes. The recently released genome of P. brassicae is only the third in the poorly studied Rhizaria and the first plant pathogenic genome of this eukaryotic group. The P. brassicae genome was estimated to be 25.5 Mb in size and predicted to contain 9730 gene models. A transcriptome of P. brassicae and Spongospora subterranea, the potato scab pathogen was also presented. Consequently, for the first time large scale data for a eukaryotic plant pathogen group outside the fungi and oomycetes are now available. This review highlights selected characteristics of the P. brassicae genome including molecular events shown or predicted to take place in each phase of its life-cycle, such as manipulation of: 1) host primary metabolism, 2) plant hormone homeostasis, and 3) plant defense. Further, future directions and challenges in the P. brassicae and plasmodiophorid genomic research are discussed.

Activation of defence pathways in Scots pine bark after feeding by pine weevil (Hylobius abietis).

BackgroundDuring their lifetime, conifer trees are exposed to numerous herbivorous insects. To protect themselves against pests, trees have developed a broad repertoire of protective mechanisms. Many of the plant’s defence reactions are activated upon an insect attack, and the underlying regulatory mechanisms are not entirely understood yet, in particular in conifer trees. Here, we present the results of our studies on the transcriptional response and the volatile compounds production of Scots pine (Pinus sylvestris) upon the large pine weevil (Hylobius abietis) feeding.ResultsTranscriptional response of Scots pine to the weevil attack was investigated using a novel customised 36.4 K Pinus taeda microarray. The weevil feeding caused large-scale changes in the pine transcriptome. In total, 774 genes were significantly up-regulated more than 4-fold (p ≤ 0.05), whereas 64 genes were significantly down-regulated more than 4-fold. Among the up-regulated genes, we could identify genes involved in signal perception, signalling pathways, transcriptional regulation, plant hormone homeostasis, secondary metabolism and defence responses. The weevil feeding on stem bark of pine significantly increased the total emission of volatile organic compounds from the undamaged stem bark area. The emission levels of monoterpenes and sesquiterpenes were also increased. Interestingly, we could not observe any correlation between the increased production of the terpenoid compounds and expression levels of the terpene synthase-encoding genes.ConclusionsThe obtained data provide an important insight into the transcriptional response of conifer trees to insect herbivory and illustrate the massive changes in the host transcriptome upon insect attacks. Moreover, many of the induced pathways are common between conifers and angiosperms. The presented results are the first ones obtained by the use of a microarray platform with an extended coverage of pine transcriptome (36.4 K cDNA elements). The platform will further facilitate the identification of resistance markers with the direct relevance for conifer tree breeding.Electronic supplementary materialThe online version of this article (doi:10.1186/s12864-015-1546-9) contains supplementary material, which is available to authorized users.

Involvement of plant stress hormones in Burkholderia phytofirmans-induced shoot and root growth promotion

Plant growth promoting bacteria (PGPB) enhance plant growth by often influencing plant hormone homeostasis. Inoculation of potato nodal explants with a known PGPB B. phytofirmans (strain PsJN) significantly enhanced shoot and root growth under gnotobiotic conditions. There was a proportionally higher increase in root than shoot biomass. The increases in shoot and root growth were assessed for association with endogenous levels of plant stress hormones, salicylic acid (SA), abscisic acid (ABA) and jasmonic acid (JA) using stable isotope dilution technique coupled with liquid chromatography–mass spectrometry. Inoculation of potato plants with PsJN caused about a 1.5-fold increase in shoot endogenous SA levels. However, shoot ABA levels were not affected, whereas shoot JA levels were not detectable. For roots, the PsJN inoculation caused almost a fourfold increase in endogenous SA levels, whereas increases in ABA and JA levels were about 1.5-fold. To test if the massive increases in SA levels following PsJN inoculation were directly related to observed shoot (about 1.5-fold) and especially root (almost threefold) growth increases, a range of exogenous SA concentrations were applied to control and PsJN-inoculated plants. Applied SA similarly inhibited root growth of control and PsJN-inoculated plants, whereas a 10 µM concentration inhibited shoot growth of PsJN-inoculated, but not control plants. It is thus concluded that while PGPB can modify in planta biosynthesis of several plant stress hormones, it is unlikely that changes in endogenous levels of these hormones are directly related to the observed plant growth increases.

RNA sequencing reveals high resolution expression change of major plant hormone pathway genes after young seedless grape berries treated with gibberellin

Seedless varieties are of particular importance to the table-grape and raisin industries. Gibberellin (GA) application is widely used in the early stages of seedless berry development to increase berry size and economic value. However, the underlying mechanism of GA induction of berry enlargement is not well understood. Here, RNA-sequencing analysis of ‘Centennial Seedless’ (Vitis vinifera L.) berries treated with GA3 12 days after flowering is reported. Pair-wise comparison of GA3-treated and control samples detected 165, 444, 463 genes with an over two-fold change in expression 1, 3, and 7 days after GA3 treatment, respectively. The number of differentially expressed genes increased with time after GA3 treatment, and the differential expression was dominated by downregulation. Significantly modulated expression included genes encoding synthesis and catabolism to manage plant hormone homeostasis, hormone transporters, receptors and key components in signaling pathways; exogenous GA3 induced multipoint cross talk with auxin, cytokinin, brassinosteroid, ABA and ethylene. The temporal gene-expression patterns of cell-wall-modification enzymes, cytoskeleton and membrane components and transporters revealed a pivotal role for cell-wall-relaxation genes in GA3-induced berry enlargement. Our results provide the first sequential transcriptomic atlas of exogenous GA3-induced berry enlargement and reveal the complexity of GA3's effect on berry sizing.

Differentially expressed microRNA cohorts in seed development may contribute to poor grain filling of inferior spikelets in rice.

BackgroundThe inferior spikelets are defined to be those at portions where the grains receive less photosynthetic products during the seed development. The typical inferior spikelets are physically located on the proximal secondary branches in a rice panicle and traditionally characterized by a later flowering time and a slower grain-filling rate, compared to those so-called superior spikelets. Grains produced on the inferior spikelets are consequently under-developed and lighter in weight than those formed on the superior spikelets. MicroRNAs (miRNAs) are recognized as key players in regulating plant development through post-transcriptional gene regulations. We previously presented the evidence that miRNAs may influence grain-filling rate and played a role in determining the grain weight and yield in rice.ResultsIn this study, further analyses of the expressed small RNAs in superior and inferior spikelets were conducted at five distinct developmental stages of grain development. Totally, 457 known miRNAs and 13 novel miRNAs were analyzed, showing a differential expression of 141 known miRNAs between superior and inferior spikelets with higher expression levels of most miRNAs associated with the superior than the inferior spikelets during the early stage of grain filling. Genes targeted by those differentially expressed miRNAs (i.e. miR156, miR164, miR167, miR397, miR1861, and miR1867) were recognized to play roles in multiple developmental and signaling pathways related to plant hormone homeostasis and starch accumulation.ConclusionsOur data established a complicated link between miRNA dynamics and the traditional role of hormones in grain filling and development, providing new insights into the widely accepted concepts of the so-called superior and inferior spikelets in rice production.

Burkholderia phytofirmans-induced shoot and root growth promotion is associated with endogenous changes in plant growth hormone levels

Plant growth promoting bacteria (PGPB) are capable of significantly altering the growth phenotype of inoculated plants. Changes in growth phenotype are often attributed to the ability of PGPB to assimilate minerals and/or increase mineral uptake, leading to increased plant root growth. However, many PGPB are also capable of either synthesizing plant hormones, such as auxins (mainly indole-3-acetic acid or IAA), gibberellins (GAs) and cytokinins (CKs) or affecting plant hormone biosynthesis (homeostasis) in planta. Burkholderiaphytofirmans strain PsJN is a PGPB capable of inducing biomass growth of several plant species, including potatoes (Solanum tuberosum L.). In this paper we examined the effect of PsJN inoculation of two potato cultivars with similar root growth, but different shoot growth patterns (faster-growing Kennebec and slower-growing Yukon gold) to asses the bacteria’s impact on growth and plant hormone homeostasis. Both cultivars showed similar and massive root growth increases after inoculation and this was associated with a twofold to threefold increase in IAA and CK (trans-zeatin or tZ) levels, expressed on a per plant basis. However, PsJN inoculation resulted in a different shoot growth response, which appeared to depend on the inherent growth characteristics of each cultivar. That is, the slower-growing Yukon gold plants matched the growth rate of faster-growing Kennebec plants 20 days after inoculation and this was associated with higher GA1 levels and lower tZ levels. It is thus concluded that B.phytofirmans strain PsJN-induced plant phenotypic changes are associated with, and likely dependent on, changes in biosynthesis of plant growth hormones.