Cadmium (Cd) is easily absorbed by rice and enters the food chain, posing a health risk to humans. Plant growth promoting bacteria (PGPB) can help the plant respond to Cd stress, but the mechanism of PGPB for Cd reduction is unclear. Therefore, this study was conducted and found inoculation with a newly isolated Pseudomonas koreensis promoted the growth of rice and reduced its Cd content. Fluorescent staining using PI and H2O2 probe indicated that PGPB attenuated oxidative damage in rice. Metabolomics revealed that 59 metabolites were upregulated after inoculation, with phenylpropanoids and flavonoids being significantly activated. Spectrophotometry analysis comfirmed the content of flavonoid, lignin, phenol, glutathione, proline and the activities of antioxidant enzymes were higher in the inoculated rice than in the control. Quantitative PCR showed the expression of genes related to phenylpropanoids (OsPAL, OsC4H, Os4CL) and flavonoids (OsCHS, OsCHI) was significantly increased by PGPB, while the genes of heavy metal transporters (OsNRAMP5, OsHMA2, OsIRT1) were significantly decreased. Overall, this study provides an insight into the PGPB-mediated detoxification mechanism in rice under Cd stress and emphasizes the role of phenylpropanoids and flavonoids in the production of low-Cd rice to ensure human health. Environmental ImplicationRice production and human health are affected by cadmium (Cd) in soil. This is the first study to integrate multiple technical approaches (i.e. metabolomics, morphology, physiology and molecular biology) to reveal the detoxification mechanism mediated by plant growth-promoting bacteria (PGPB) in rice in response to Cd. This study novelly revealed that inoculation with PGPB resulted in higher grain yield and lower Cd content by inducing the biosynthesis of phenylpropanoid and flavonoid in rice. This provided a theoretical basis for future practical regulation of Cd accumulation in crops using PGPB and ensured food safety and human health.
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