Plant Growth-promoting Activities Research Articles

Pseudomonas and Acinetobacter spp. capable of metabolizing aromatics displays multifarious plant growth promoting traits: Insights on strategizing consortium-based application to agro-ecosystems

The persistence and slow rate of natural attenuation of genotoxic and endocrine-disrupting aromatic pollutants has impacted the soil heath of agro-ecologies leading to various health and environmental issues. Ecotoxic-xenobiotic compounds degradation property along with plant growth promoting traits of microbes are beneficial for devising strategies for improved agricultural soil health and its clean-up. Present study assessed the multipartite plant growth promoting-, biocontrol- and niche adaptive- traits of five aromatic degrading soil bacteria viz. Pseudomonas bharatica CSV86T, Pseudomonas sp. C5pp, Pseudomonas sp. PP4, Pseudomonas sp. PPD and Acinetobacter sp. ISP4. Solubilization of rock phosphate (P) and feldspar (K), production of plant growth hormone (auxin; IAA), ammonia, siderophores and ACC deaminase by strain CSV86T, C5pp and PP4 were observed. Similarly, high fusaric acid resistance (MIC: 1–1.2 mg mL−1) and tolerance to salinity (5–7.5 %) was observed. In vitro application of CSV86T, C5pp, PP4 and ISP4 as consortium resulted in significant increase (P < 0.05) in the seedling shoot length (15–37 %), root length (65–150 %) and biomass (30–40 %) of wheat, mung bean and fenugreek. In-soil microcosm assay confirmed the plant growth promoting and phytoprotective ability of this consortium against toxicity of aromatics in contaminated soil. Antifungal activity against phytopathogenic fungi Magnaporthe oryzae and Aspergillus spp., ability to produce lytic enzymes and HCN suggests their biocontrol potential. Four aromatic degrading bacteria (as a consortium) exhibiting plant growth promotion and biocontrol activity could be used as an eco-friendly bioremediator-biofertilizer-biocontrol agent (bioformulation) for restoration of agricultural soil with improved crop productivity.

Population and genetic diversity of rhizobia nodulating chickpea in Indo-Gangetic plains of India.

Chickpea is a crucial leguminous crop and India is the leading producer, with an average yield of 1.18 tons/ha. It is renowned for its specific nodulation with rhizobia. Despite its significance, studies on chickpea-nodulating rhizobia often focused on small-scale investigations within restricted geographical areas. This study delves into the population, genetic diversity, and symbiotic efficiency of chickpea-nodulating rhizobia in the Indo-Gangetic Plains (IGP) of India. The study revealed a low population of chickpea rhizobia (ranging from 11 to 565 cells/g dry soil) across the examined area. Only three samples exhibited a population exceeding 300 cells/g, emphasizing the potential need for inoculation of rhizobia with efficient and competitive strains. Correlation analysis highlighted a significant positive correlation between rhizobial population and organic carbon content, among various soil parameters like pH, electrical conductivity, available nitrogen (N), phosphorus (P), potassium (K), and organic carbon content. Among the 79 presumptive rhizobia isolated from 24 IGP locations, 61 successfully nodulated chickpea cultivar Pusa 362. 16S rRNA gene sequencing categorized 54 isolates as Mesorhizobium, four as Rhizobium, and three as Ensifer. Genetic diversity assessed by BOX-PCR revealed sixteen distinct banding patterns, underscoring substantial variability among the strains. The strains exhibited plant growth-promoting activities, salt tolerance up to 3% NaCl, and pH tolerance between 4 and 10. Six symbiotically efficient strains were identified based on their positive impact on nodulation and dry biomass. This study provides crucial insights into the diversity, genetic makeup, and symbiotic efficiency of chickpea rhizobia in the IGP, supporting the potential use of indigenous rhizobia for sustainable chickpea productivity in the region.

Plant growth promoting activities of endophytic bacteria from Melia azedarach (Meliaceae) and their influence on plant growth under gnotobiotic conditions

Bacteria that live asymptomatically within plant tissues are known as endophytes. Because of the close relation with the plant host, they have been a matter of interest for application as plant growth promoters. Melia azedarach is a widely distributed medicinal tree with proven insecticidal, antimicrobial, and antiviral activity. The aim of this study was to isolate and characterize endophytic bacteria from M. azedarach and analyze their plant growth promoting activities for the potential application as biological products. Bacteria were isolated from roots and leaves of trees growing in two locations of Northeastern Argentina. The isolates were characterized by repetitive extragenic palindromic sequence PCR and 16S rDNA sequence analysis. The plant growth-promoting activities were assayed in vitro, improvement of plant growth of selected isolates was tested on M. azedarach plantlets, and the effect of selected ACC deaminase producing isolates was tested on tomato seedlings under salt-stress conditions. The highest endophytic bacterial abundance and diversity were obtained from the roots. All isolates had at least one of the assayed plant growth-promoting activities and 80 % of them had antagonistic activity. The most efficient bacteria were Pseudomonas monteilii, Pseudomonas farsensis, Burkholderia sp. and Cupriavidus sp. for phosphate solubilization (2064 μg P ml−1), IAA production (94.7 μg ml−1), siderophore production index (5.5) and ACC deaminase activity (1294 nmol α-ketobutyrate mg−1 h−1). M. azedarach inoculation assays revealed the bacterial growth promotion potential, with Pseudomonas monteilii, Pseudomonas farsensis and Cupriavidus sp. standing out for their effect on leaf area, leaf dry weight, specific leaf area, and total Chl, Mg and N content, with increases of up to 149 %, 58 %, 65 %, 178 %, 76 % and 97.7 %, respectively, compared to NI plants. Efficient ACC deaminase-producing isolates increased stress tolerance of tomato plants under saline condition. Overall, these findings indicate the potential of the endophytic isolates as biostimulant and biocontrol agents.

Diversity and potential functional role of phyllosphere-associated actinomycetota isolated from cupuassu (Theobroma grandiflorum) leaves: implications for ecosystem dynamics and plant defense strategies.

Exploring the intricate relationships between plants and their resident microorganisms is crucial not only for developing new methods to improve disease resistance and crop yields but also for understanding their co-evolutionary dynamics. Our research delves into the role of the phyllosphere-associated microbiome, especially Actinomycetota species, in enhancing pathogen resistance in Theobroma grandiflorum, or cupuassu, an agriculturally valuable Amazonian fruit tree vulnerable to witches' broom disease caused by Moniliophthora perniciosa. While breeding resistant cupuassu genotypes is a possible solution, the capacity of the Actinomycetota phylum to produce beneficial metabolites offers an alternative approach yet to be explored in this context. Utilizing advanced long-read sequencing and metagenomic analysis, we examined Actinomycetota from the phyllosphere of a disease-resistant cupuassu genotype, identifying 11 Metagenome-Assembled Genomes across eight genera. Our comparative genomic analysis uncovered 54 Biosynthetic Gene Clusters related to antitumor, antimicrobial, and plant growth-promoting activities, alongside cutinases and type VII secretion system-associated genes. These results indicate the potential of phyllosphere-associated Actinomycetota in cupuassu for inducing resistance or antagonism against pathogens. By integrating our genomic discoveries with the existing knowledge of cupuassu's defense mechanisms, we developed a model hypothesizing the synergistic or antagonistic interactions between plant and identified Actinomycetota during plant-pathogen interactions. This model offers a framework for understanding the intricate dynamics of microbial influence on plant health. In conclusion, this study underscores the significance of the phyllosphere microbiome, particularly Actinomycetota, in the broader context of harnessing microbial interactions for plant health. These findings offer valuable insights for enhancing agricultural productivity and sustainability.

Hydroponics with Microalgae and Cyanobacteria: Emerging Trends and Opportunities in Modern Agriculture.

The global population is expected to reach 9.5 billion, which means that crop productivity needs to double to meet the growing population's food demand. Soil degradation and environmental factors, such as climate events, significantly threaten crop production and global food security. Furthermore, rapid urbanization has led to 55% of the world's population migrating to cities, and this proportion is expected to increase to 75% by 2050, which presents significant challenges in producing staple foods through conventional hinterland farming. Numerous studies have proposed various sustainable farming techniques to combat the shortage of farmable land and increase food security in urban areas. Soilless farming techniques such as hydroponics have gained worldwide popularity due to their resource efficiency and production of superior-quality fresh products. However, using chemical nutrients in a conventional hydroponic system can have significant environmental impacts, including eutrophication and resource depletion. Incorporating microalgae into hydroponic systems as biostimulants offers a sustainable and ecofriendly approach toward circular bioeconomy strategies. The present review summarizes the plant growth-promoting activity of microalgae as biostimulants and their mechanisms of action. We discuss their effects on plant growth parameters under different applications, emphasizing the significance of integrating microalgae into a closed-loop circular economy model to sustainably meet global food demands.

Zinc Oxide Nanoparticles in the “Soil–Bacterial Community–Plant” System: Impact on the Stability of Soil Ecosystems

The use of man-made nanoparticles (NPs) has increased exponentially in recent years, many of which accumulate in significant quantities in soil, including through use in agriculture as nanofertilizers and nanopesticides. ZnO NPs are more environmentally friendly but have specific antimicrobial activity, which can affect soil microbiota, thereby influencing key microbial processes such as mineralization, nitrogen fixation and plant growth-promoting activities. Their behavior and persistence in soil depend on their chemical nature and soil characteristics. This review summarizes the applications of ZnO NPs in soil systems and their effects on various plants and soil microorganisms, particularly rhizobacteria that promote plant growth. A stimulating effect of ZnO NPs on the morphometric and biochemical characteristics of plants, as well as on soil microbiota and its activity at relatively low concentrations of up to 500 mg/mL and 250 mg/kg, respectively, is observed. As the concentration of ZnO NPs increases above these limits, toxic effects appear. The different effects of ZnO NPs are related to their size, dose, duration of exposure, solubility in water, as well as soil type, acidity and organic matter content. The review substantiates the need to study the behavior of ZnO NPs in the “soil-plant-microbiota” system for the possibility of using nanotechnologies in the agricultural industry and ensuring the safety of agricultural products.

Plant growth promotion activities of Bacillus spp. isolated from Jakrem hot water spring of Meghalaya, North East India

The study aims to investigate plant growth promotion (PGP) activities of thermophilic bacteria isolated from the Jakrem hot spring in Meghalaya, North-East India, and determine their effect on Brassica juncea's growth. The bacteria were isolated by a culture-dependent approach following a serial dilution method in a nutrient agar medium. All the isolates were determined for PGP attributes such as indole acetic acid, phosphate solubilization, hydrolytic enzymes, and siderophore production. The potent bacterial isolates were characterized by 16S rDNA sequencing and phylogenetic analysis. Altogether, 53 bacterial isolates were obtained, most belonging to the genus Bacillus. Of the total isolates, 37.7% exhibited both PGP and hydrolytic enzyme activities. Three isolates, namely JAB1, JAB8, and JAB100, showed promising PGP and were identified as Bacillus velezensis, B. proteolyticus, and Bacillus sp., respectively. The PGP attributes of these isolates were determined in vivo on B. juncea, and their effects were measured in terms of shoot and root length biomass and biochemical contents. It was observed that combined inoculation of all three isolates significantly enhanced the growth and development of B. juncea, evident by increased shoot and root length, fresh and dry weight, and higher levels of protein, phenol, flavonoid, and chlorophyll content compared to the control. In conclusion, the study highlights the potential application of thermophilic Bacillus spp. from hot springs as bioinoculants to enhance crop productivity in sustainable agricultural practices.

Root Rot Management in Common Bean (Phaseolus vulgaris L.) Through Integrated Biocontrol Strategies using Metabolites from Trichoderma harzianum, Serratia marcescens, and Vermicompost Tea

Common bean (Phaseolus vulgaris L.) is an essential food staple and source of income for small-holder farmers across Africa. However, yields are greatly threatened by fungal diseases like root rot induced by Rhizoctonia solani. This study aimed to evaluate an integrated approach utilizing vermicompost tea (VCT) and antagonistic microbes for effective and sustainable management of R. solani root rot in common beans. Fourteen fungal strains were first isolated from infected common bean plants collected across three Egyptian governorates, with R. solani being the most virulent isolate with 50% dominance. Subsequently, the antagonistic potential of vermicompost tea (VCT), Serratia sp., and Trichoderma sp. was assessed against this destructive pathogen. Combinations of 10% VCT and the biocontrol agent isolates displayed potent inhibition of R. solani growth in vitro, prompting in planta testing. Under greenhouse conditions, integrated applications of 5 or 10% VCT with Serratia marcescens, Trichoderma harzianum, or effective microorganisms (EM1) afforded up to 95% protection against pre- and post-emergence damping-off induced by R. solani in common bean cv. Giza 6. Similarly, under field conditions, combining VCT with EM1 (VCT + EM1) or Trichoderma harzianum (VCT + Trichoderma harzianum) substantially suppressed disease severity by 65.6% and 64.34%, respectively, relative to untreated plants. These treatments also elicited defense enzyme activity and distinctly improved growth parameters including 136.68% and 132.49% increases in pod weight per plant over control plants. GC–MS profiling of Trichoderma harzianum, Serratia marcescens, and vermicompost tea (VCT) extracts revealed unique compounds dominated by cyclic pregnane, fatty acid methyl esters, linoleic acid derivatives, and free fatty acids like oleic, palmitic, and stearic acids with confirmed biocontrol and plant growth-promoting activities. The results verify VCT-mediated delivery of synergistic microbial consortia as a sustainable platform for integrated management of debilitating soil-borne diseases, enhancing productivity and incomes for smallholder bean farmers through regeneration of soil health. Further large-scale validation can pave the adoption of this climate-resilient approach for securing food and nutrition security.

Screening for drought-tolerant mungbean root nodule bacteria with multiple plant growth promoting traits in Aridisol

Mungbean (Vigna radiata L. Wilczek) is an economically important legume crop grown across India. The growth and yield of the crop have been declining over the recent years due to climate change which leads to decrease in soil moisture. Applications of drought-tolerant plant growth-promoting (PGP) rhizobial strains have been found to enhance crop productivity under water deficiency. Therefore, the objective of this study was to screen the bacterial strains from the mungbean root nodule that may help in improving the plant growth under drought condition. Bacteria were isolated from mungbean root nodules and screened for in vitro drought-tolerance using different concentrations of PEG 6000 at 10, 20, 30 and 40 %, and temperature-tolerance at 30, 35, 40 and 45 °C. In primary screening, out of 98 root nodule bacterial isolates tested, only 25 % showed drought-tolerance at 40 % polyethylene glycol (PEG)-6000 while 22 % of bacteria survived at 45 °C. During secondary screening on combined stress-tolerance, only 8 % of isolates showed tolerance of 40 % PEG-6000 at 45 °C. The in vitro drought-tolerance of bacteria varied significantly according to their sampling region/district. Various PGP traits, i.e., nitrogen fixation, phosphate solubilization, and production of indole acetic acid, ammonia, and 1-aminocyclopropane-1-carboxylate (ACC) deaminase, were analyzed in isolated stress-tolerant bacteria, which may contribute towards stress-tolerance and crop productivity in mungbean. The most promising drought-tolerant nodule bacterial isolates were identified as Rhizobium sp. and Pseudomonas indica, respectively by 16S rRNA sequencing. Moreover, bacterial isolates MuJs52b, MuJs53b, MuJs72a and MuBk32b, which exhibited drought-tolerance of 40 % PEG-6000 and different PGP activities, were used as bioinoculant on mungbean plants grown under moderate to severe drought at 50 and 25 % of field capacity (FC) in pot experiment. Bacteria inoculated plants showed maximum increase in nodule dry weight (56.5 %) and shoot dry weight (87.5 %) per plant even under severe drought at 25 % FC. The results indicated that application of four potential nodule bacterial isolates, which were able to tolerate drought stress of 40 % PEG-6000, and having multiple PGP traits, showed stimulation of the mungbean growth even up to 25 % FC. These plant growth-promoting nodule bacterial strains may be used for the enhancement of mungbean crop productivity under drought stress and could be used as biofertilizer.

Anti-oomycete activity and plant growth promoting properties of avocado fungal endophytes

Fungal endophytes are known as promising plant growth-promoting microorganisms. Surprisingly, despite the economic importance of avocado, the antimicrobial and plant growth-promoting properties of its fungal endophytes have seldom been investigated. Our objectives were to evaluate the anti-oomycete activity of avocado fungal endophytes and assess their potential plant growth-promoting properties, using Arabidopsis thaliana as a model plant. In total, 89 fungal isolates were obtained from the roots of avocado trees and grouped into 24 morphotypes. One isolate per morphotype was randomly selected to assess its antagonistic activity against Phytophthora cinnamomi through dual culture assays. The strongest inhibition of P. cinnamomi was induced by endophytic fungi belonging to the Fusarium, Mortierella and Penicillium genera. The six most promising fungal isolates were selected to assess their plant growth-promoting traits in co-inoculation assays with A. thaliana. All tested fungal endophytes were able to modify the plant root architecture and increase the number of lateral roots. Moreover, an accumulation of auxins was detected in the xylem and meristematic zone of plants inoculated with Mortierella sp. PC-T3-3.1 and Metapochonia sp. PC-T2-4.2, whilst auxin accumulation was restricted to the emerging lateral roots of plants inoculated with Penicillium sp. C-T0-3.1. Indole quantification showed that Penicillium sp. C-T0-3.1 produced the highest concentration of indole acetic acid (IAA) and indole butyric acid (IBA), despite the lack of auxin responsiveness in plants in the co-inoculation assays. Mortierella sp. PC-T3-3.1 and Metapochonia sp. PC-T2-4.2 produced more IAA and IBA when co-inoculated with A. thaliana than when growing alone, which suggests that sensing of plant signals could induce the production of auxin-like compounds by these two endophytes. Collectively, our findings contribute to elucidate the mechanisms underpinning the plant growth-promoting activity of avocado fungal endophytes, which will be key to harness their full metabolic potential.

Comparative genomic analysis of Bacillus atrophaeus HAB-5 reveals genes associated with antimicrobial and plant growth-promoting activities.

Bacillus atrophaeus HAB-5 is a plant growth-promoting rhizobacterium (PGPR) that exhibits several biotechnological traits, such as enhancing plant growth, colonizing the rhizosphere, and engaging in biocontrol activities. In this study, we conducted whole-genome sequencing of B. atrophaeus HAB-5 using the single-molecule real-time (SMRT) sequencing platform by Pacific Biosciences (PacBio; United States), which has a circular chromosome with a total length of 4,083,597 bp and a G + C content of 44.21%. The comparative genomic analysis of B. atrophaeus HAB-5 with other strains, Bacillus amyloliquefaciens DSM7, B. atrophaeus SRCM101359, Bacillus velezensis FZB42, B. velezensis HAB-2, and Bacillus subtilis 168, revealed that these strains share 2,465 CDSs, while 599 CDSs are exclusive to the B. atrophaeus HAB-5 strain. Many gene clusters in the B. atrophaeus HAB-5 genome are associated with the production of antimicrobial lipopeptides and polypeptides. These gene clusters comprise distinct enzymes that encode three NRPs, two Transat-Pks, one terpene, one lanthipeptide, one T3PKS, one Ripp, and one thiopeptide. In addition to the likely IAA-producing genes (trpA, trpB, trpC, trpD, trpE, trpS, ywkB, miaA, and nadE), there are probable genes that produce volatile chemicals (acoA, acoB, acoR, acuB, and acuC). Moreover, HAB-5 contained genes linked to iron transportation (fbpA, fetB, feuC, feuB, feuA, and fecD), sulfur metabolism (cysC, sat, cysK, cysS, and sulP), phosphorus solubilization (ispH, pstA, pstC, pstS, pstB, gltP, and phoH), and nitrogen fixation (nif3-like, gltP, gltX, glnR, glnA, nadR, nirB, nirD, nasD, narl, narH, narJ, and nark). In conclusion, this study provides a comprehensive genomic analysis of B. atrophaeus HAB-5, pinpointing the genes and genomic regions linked to the antimicrobial properties of the strain. These findings advance our knowledge of the genetic basis of the antimicrobial properties of B. atrophaeus and imply that HAB-5 may employ a variety of commercial biopesticides and biofertilizers as a substitute strategy to increase agricultural output and manage a variety of plant diseases.

Indole Acetic Acid (IAA) Mediated Plant Growth Promotion Activity of Fluorescent Pseudomonads and Bacillus spp.

This investigation was made to study the involvement of IAA in plant growth promotion and vigor of wheat plants induced with plant growth promoting rhizobacteria. Nineteen isolates of fluorescent pseudomonads and 11 isolates of Bacillus spp. were subjected to germination percentage and seedling vigor index test. These parameters were determined according to recommended methods by ISTA (1985). The IAA production from selected bacterial isolates, which were showing the potential function of plant growth promotion were further subjected to quantitative analysis using Salkowski’s reagent (2% of 0.5 M FeCl3 in 34% HClO4) for Colorimetric detection. The vigor index and plant growth were significantly increased in Pfa-65 (43.36%) followed by B-18 (42.58%), Pfa-77 (40.83%), B-24 (40.68), Pfa-37(38.82%) and B-38 (38.52). The maximum concentration of IAA was detected in the isolate B-24(36.66 µg/ml) followed by Pfa-65(36.16 µg/ml), B-18(35.98 µg/ml) and Pfa-77(35.72 µg/ml). A positive correlation was observed between concentration of IAA produced and germination percentage with PGPR treatments (correlation coefficient was 0.94). The correlation coefficient was 0.96 between IAA produced and percent increase in vigor index with the treatments. Our data suggests that IAA, a growth promoting hormone, might be the key factor to promote the plant growth directed by the rhizobacteria

Mangrove sediments-associated bacterium (Bacillus sp. SW7) with multiple plant growth-promoting traits promotes the growth of tomato (Solanum Lycopersicum)

Global food production intensification presents a major hurdle to ensuring food security amidst a growing world population. Widespread use of chemical fertilizers in recent decades has risked soil fertility, compounded by the challenges posed by climate change, particularly in arid regions. To address these issues, adopting plant growth-promoting (PGP) bacteria stands out as a promising solution, offering multifaceted benefits to arid agroecosystems. We isolated a bacterial strain, SW7, from mangrove sediment, characterised the entire genome followed by phylogenetic analyses, and evaluated its in-vitro PGP activity. Subsequently, we examined its impact on tomato seed germination and plant growth. The strain SW7 exhibited growth on 11% NaCl, survival at 50°C, and possessed multiple PGP traits such as significant increase in seed germination rate (60.60 ± 38.85%), phosphate (83.3 g L−1) and potassium (39.6 g L−1) solubilization and produced indole acetic acid (3.60 ppm). Additionally, strain SW7 tested positive for ammonia, catalase, and oxidase enzyme production. The strain SW7 genome consists of 5.1 MB with 35.18% G+C content. Through genome-based phylogenetic and orthoANI analyses, the strain was identified as a novel Bacillus species, designated herein as Bacillus sp. SW7. In an eight-week shade-house experiment, inoculation of strain SW7 improved, leaf number, leaf density, leaf area index and mass water of tomatoes. Additional parameters, like chlorophyll a, chlorophyll b and carotenoids were not affected in SW7-inoculated tomatoes. In conclusion, Bacillus sp. SW7 exhibits multiple PGP traits and an adaptive capacity to high temperature and salinity, positioning it as a potential candidate for elevating the productivity of arid agroecosystems.

Unveiling the efficacy of a bacterial antagonist in the management of tomato wilt disease caused by Ralstonia solanacearum

The long-term application of agrochemicals, including pesticides, in intensive agricultural practices to protect crops from biotic stresses results in the emergence of resistance among phytopathogens and the ineffectiveness of chemical applications. The microbiological strategies, in contrast, minimize the reliance on chemicals and, hence, reduce environmental and human health risks. Bacterial wilt of tomato induced by Ralstonia solanacearum is one of the most destructive diseases worldwide that requires urgent attention to develop a safer and more efficient method to control the phytopathogen. The present work was conducted in the year 2022-2023. In this study, the bacterial wilt was managed by an antagonist bacterium, Pseudomonas fluorescens, exhibiting variable morphological, biochemical, and plant growth-promoting activities. The P. fluorescens inhibited the growth of R. solanacearum in plate assay at different time intervals (0-48 h). The SEM image of R. solanacearum cells cultured with P. fluorescens revealed pores, distortion, and fragmented cell envelope, while the untreated bacterial cells were uniform and smooth. Tomato plants infected with R. solanacearum showed 89% disease incidence compared to uninfected but PGPR-inoculated tomato plants. Application of P. fluorescens reduced disease incidence by 63% compared to R. solanacearum infested plants. Furthermore, plant length enhanced by 21 and 26% significantly following bacterial inoculation after three and four weeks of growth. Conclusively, this study emphasizes the effectiveness of using PGPR as a potent strategy for managing wilt disease in vegetable crops, especially tomato.

Biosurfactant production by Bacillus amyloliquefaciens, characterization and its potential applications

Aim: To identify indigenous bacteria responsible for producing biosurfactants in soil contaminated by oil and to investigate their potential uses in the fields of pharmaceuticals and environmental applications. Methodology: The microorganisms of oil-contaminated soil were isolated, screened, and identified using 16S rRNA gene sequencing. Bacillus amyloliquefaciens was utilized to produce biosurfactants, and were characterized by UV, TLC, FTIR, HPTLC, and GCMS analysis. Antibacterial activity, plant growth promotion, biocompatibility, and wound healing activity of surfactant were performed. Results: Six bacterial cultures (B1 to B6) were isolated from the soil samples collected from various locations in Kerala and Tamil Nadu. Among the isolates screened for biosurfactant production, Bacillus amyloliquefaciens exhibited the highest capacity for biosurfactant production, confirmed through 16S rRNA gene sequencing. The biosurfactant produced was identified as surfactin of lipopeptide nature, characterized by various analytical techniques: UV absorption at 400 nm, TLC and HPTLC (Rf value of 0.58), FTIR (prominent peak at 3819 cm-1 corresponding to -OH groups), GCMS with a maximum retention time of 12.03. Surfactin effectively inhibited pathogenic bacteria, enhanced plant growth, was biocompatible, and enhanced the rate of cell migration towards wound scratch. Interpretation: The current study revealed that Bacillus amyloliquefaciens, isolated from oil-contaminated soil, is capable of producing biosurfactant surfactin. Additionally, it unveiled a broad spectrum of applications for surfactin, encompassing wound healing, biocompatibility, antimicrobial activity, and promotion of plant growth. Key words: Antibacterial activity, Biocompatibility, Bacillus amyloliquefaciens, Biosurfactant, Wound healing

Understanding the Molecular Mechanism of PGPR Strain Priestia megaterium from Tea Rhizosphere for Stress Alleviation and Crop Growth Enhancement

The study aimed to assess the plant growth-promoting (PGP) capabilities and abiotic stress tolerance of strain IHB B 7164 with a focus on identifying associated genes through genomic analysis. Isolated from the tea rhizosphere, strain underwent screening for multiple PGP traits and stress tolerance against various abiotic factors. Taxonogenomic analysis of the complete genome identified the bacterium as Priestia megaterium exhibiting high similarity (97.04 % ANI, 74.3 % in silico DDH) to P. megaterium ATCC 14581. Functional annotations of the genome highlighted gene clusters associated with PGP traits and stress tolerance substantiating the strain's potential in promoting plant growth under stress conditions. The strain demonstarted robust growth and PGP activities under stressed culture conditions such as acidity, temperature fluctuations, desiccation, salinity, and exposure to calcium, aluminum, and iron salts, affirming its status as a stress-tolerant rhizobacterium. Screening of PGP traits under acidic conditions revealed phosphate solubilization, ACC-deaminase activity and production of IAA-like auxins. Notably gluconic and oxalic acids were consistently detected during solubilization of tri-calcium phosphate (TCP), aluminum phosphate (Al-P), and iron phosphate (Fe-P). Inoculation with the strain led to significant enhancements in tea nursery plants including a 9 % increase in plant height, 10 % increase in leaf number, and substantial improvements in leaf fresh and dry weights. Similarly, pea and wheat yields recorded notable increases of 16.9 % and 18.3 %, respectively under field conditions. These findings underscore the efficacy of P. megaterium strain IHB B 7164 as an abiotic stress-tolerant and broad-spectrum plant growth promoting rhizobacteria (PGPR) capable of enhancing plant growth and productivity across diverse agricultural settings.

Revealing the diversity of Jojoba-associated fungi using amplicon metagenome approach and assessing the in vitro biocontrol activity of its cultivable community.

Jojoba shrubs are wild plants cultivated in arid and semiarid lands and characterized by tolerance to drought, salinity, and high temperatures. Fungi associated with such plants may be attributed to the tolerance of host plants against biotic stress in addition to the promotion of plant growth. Previous studies showed the importance of jojoba as jojoba oil in the agricultural field; however, no prior study discussed the role of jojoba-associated fungi (JAF) in reflecting plant health and the possibility of using JAF in biocontrol. Here, the culture-independent and culture-dependent approaches were performed to study the diversity of the jojoba-associated fungi. Then, the cultivable fungi were evaluated for in-vitro antagonistic activity and in vitro plant growth promotion assays. The metagenome analysis revealed the existence of four fungal phyla: Ascomycota, Aphelidiomycota, Basidiomycota, and Mortierellomycota. The phylum Ascomycota was the most common and had the highest relative abundance in soil, root, branch, and fruit samples (59.7%, 50.7%, 49.8%, and 52.4%, respectively). Alternaria was the most abundant genus in aboveground tissues: branch (43.7%) and fruit (32.1%), while the genus Discosia had the highest abundance in the underground samples: soil (24%) and root (30.7%). For the culture-dependent method, a total of 14 fungi were isolated, identified, and screened for their chitinolytic and antagonist activity against three phytopathogenic fungi (Fusarium oxysporum, Alternaria alternata and Rhizoctonia solani) as well as their in vitro plant growth promotion (PGP) activity. Based on ITS sequence analysis, the selected potent isolates were identified as AspergillusstellatusEJ-JFF3, Aspergillusflavus EJ-JFF4, Stilbocreasp. EJ-JLF1, Fusariumsolani EJ-JRF3, and AmesiaatrobrunneaEJ-JSF4. The endophyte strain A. flavus EJ-JFF4 exhibited the highest chitinolytic activity (9 Enzyme Index) and antagonistic potential against Fusarium oxysporum, Alternaria alternata, and Rhizoctonia solani phytopathogens with inhibitory percentages of 72, 70, and 80 respectively. Also, A. flavus EJ-JFF4 had significant multiple PGP properties, including siderophore production (69.3%), phosphate solubilization (95.4 µg ml-1). The greatest production of Indol-3-Acetic Acid was belonged to A.atrobrunnea EJ-JSF4 (114.5 µg ml-1). The analysis of FUNGuild revealed the abundance of symbiotrophs over other trophic modes, and the guild of endophytes was commonly assigned in all samples. For the first time, this study uncovered fungal diversity associated with jojoba plants using a culture-independent approach and in-vitro assessed the roles of cultivable fungal strains in promoting plant growth and biocontrol. The present study indicated the significance of jojoba shrubs as a potential source of diverse fungi with high biocontrol and PGP activities.

Evaluation of commercial importance of endophytes isolated from Argemone mexicana and Papaver rhoeas.

The paper industry is a composite one constituting different types of mills, processes, and products. The paper industries consume large amounts of resources, like wood and water. These industries also create huge amounts of waste that have to be treated. In our study, 23 endophytic bacteria were isolated from Argemone mexicana, and 16 endophytic bacteria were isolated from Papaver rhoeas. Seventeen and 15 bacterial endophytes from A. mexicana and P. rhoeas, respectively, showed cellulose-degrading activity. The biochemical and molecular characterization were done for endophytic bacteria with cellulolytic activity. The consortium of cellulose-degrading endophytic bacteria from A. mexicana showed endoglucanase activity (0.462IU/ml) and FPCase enzyme activity (0.269IU/ml) and from P. rhoeas gave endoglucanase activity (0.439IU/ml) and FPCase enzyme activity (0.253IU/ml). Degraded carboxy methylcellulose and filter paper were further treated by Saccharomyces cerevisiae and bioethanol was produced. Cellulose-degrading endophytic bacteria were also tested for auxin, siderophore production, and phosphate solubilization activities. Individual cellulose-degrading endophytic bacteria with plant growth-promoting activities were used as biofertilizers, tested for plant growth-promoting activities using Basmati Pusa 1121 rice, and plant growth parameters were recorded. The degraded paper enhances the growth of rice plants. Selected bacterial endophytes and their consortia from A. mexicana and P. rhoeas were powerful cellulose degraders, which can be further employed for ethanol production and as significant biofertilizers in agriculture.

Identification and genomic insights into a strain of Bacillus velezensis with phytopathogen-inhibiting and plant growth-promoting properties

The use of biological agents offers a sustainable alternative to chemical control in managing plant diseases. In this study, Bacillus velezensis IFST-221 was isolated from the rhizosphere of a healthy maize plant amidst a population showing severe disease symptoms. The investigation demonstrated a broad-spectrum antagonistic activity of IFST-221 against eight species of pathogenic ascomycetes and oomycetes, suggesting its potential utility in combating plant diseases like maize ear rot and cotton Verticillium wilt. Additionally, our study unveiled that IFST-221 has demonstrated significant plant growth-promoting properties, particularly in maize, cotton, tomato, and broccoli seedlings. This growth promotion was linked to its ability to produce indole-3-acetic acid, nitrogen fixation, phosphate and potassium solubilization, and biofilm formation in laboratory conditions. A complete genome sequencing of IFST-221 yielded a genome size of 3.858 M bp and a GC content of 46.71%. The genome analysis identified 3659 protein-coding genes, among which were nine secondary metabolite clusters with known antimicrobial properties. Additionally, three unknown compounds with potentially novel properties were also predicted from the genomic data. Genome mining also identified several key genes associated with plant growth regulation, colonization, and biofilm formation. These findings provide a compelling case for the application of B. velezensis IFST-221 in agricultural practices. The isolate’s combined capabilities of plant growth promotion and antagonistic activity against common plant pathogens suggest its promise as an integrated biological agent in disease management and plant productivity enhancement.

Abiotic stress tolerance and antifungal activities of rhizobacteria for the management of soil-borne pathogens

Cotton production is negatively affected by both biotic (diseases and insects) and abiotic (high temperature, salinity, water deficit, and extreme pH) factors. Soil-borne diseases, especially wilts and rots, significantly reduce cotton yield. Thus, we aimed to isolate and identify multi-stress tolerant bacterial antagonistic agents (AGAs) against two major soil-borne pathogens, Macrophomina phaseolina and Fusarium oxysporum. A total of 132 isolates with distinct morphologies were recovered from 25 different rhizospheric soil samples of cotton. A dual culture plate and broth assay confirmed the antagonistic activity of the isolates against these phytopathogens. Four selected AGAs thrived in salt stress induced by different NaCl concentrations, up to 1.71 M, except for isolate 62, which survived up to 0.85 M. Under osmotic stress, all the AGAs were tolerant of up to −1.03 MPa. Similarly, all the AGAs were able to survive over a temperature range of 20–50 °C except for isolate 62, which survived up to 45 °C and was regarded as thermotolerant. All four AGAs were able to grow at pH values ranging from 5 to 9. AGA 18 and S46-7 survived under highly acidic conditions (pH 4). These multi-stress tolerant AGAs also exhibited different plant growth-promoting activities, such as mineral solubilization, ACC-deaminase production, and IAA production. Molecular identification revealed the following AGAs: Bacillus siamensis SSVP1 (18), Bacillus halotolerans SSVP2 (34), Pseudomonas aeruginosa SSVP3 (62), and Bacillus tequilensis SSVP4 (S46-7). AGAs with multiple stress tolerance traits can serve as potential biocontrol agents in the field to reduce pesticide consumption in cotton-growing areas.