Plant Cell Biology Research Articles

Cytoskeletal and developmental alterations in Ceratophyllum demersum induced by microcystin-LR, a cyanobacterial toxin

The aim of the present work was the investigation of microtubule organization related to developmental processes of Ceratophyllum demersum, a submergent aquatic macrophyte, as affected by microcystin-LR (MCY-LR), a cyanobacterial toxin. We studied the time- and dose-dependent effects of the cyanotoxin in a concentration range of 0.01–20 μg mL −1 (0.01–20.1 μM) at exposure times of 2–16 d. At short term (4 d) of MCY-LR exposure we observed the inhibition of C. demersum shoot tip elongation. This phenomenon was already observed at 0.01 μg mL −1 MCY-LR (reduction of shoot tip length to 56 ± 3.6% of controls) and correlated with the induction of cortical microtubule (CMT) reorientation from transverse to longitudinal known to induce radial expansion of meristematic cells instead of normal elongation. Concomitantly we detected the increase of the percentage of cells in early mitosis in shoot tip meristems, from 1.17 ± 0.2% for controls to 1.93 ± 0.3 at 0.01 μg mL −1 MCY-LR and 6.19 ± 0.5 at 10 μg mL −1 MCY-LR. Cyanotoxin exposure induced the inhibition of general shoot elongation that was more pronounced than inhibition of the increase of leaf whorl number or fresh weight in the treatment period and this was observable at as short as 2–4 d of 2.5 μg mL −1 MCY-LR exposure. This observation further proved that the MCY-LR-induced inhibition of cell elongation is responsible mainly for growth inhibition in C. demersum. Concomitantly with developmental and growth changes MCY-LR decreased protein and chlorophyll content at 16 d of exposure: at 20 μg mL −1 of cyanotoxin, protein content was reduced to 53.3 ± 2.8%, while total chlorophyll content to 46.53 ± 2.7% of controls. This is the first study showing that MCY-LR inhibits the growth of C. demersum through cytoskeletal reorganization. This plant proved to be a powerful model system for toxicological as well as plant cell biology studies.

Regulation of Actin Dynamics in Pollen Tubes: Control of Actin Polymer Level

Actin cytoskeleton undergoes rapid reorganization in response to internal and external cues. How the dynamics of actin cytoskeleton are regulated, and how its dynamics relate to its function are fundamental questions in plant cell biology. The pollen tube is a well characterized actin-based cell morphogenesis in plants. One of the striking features of actin cytoskeleton characterized in the pollen tube is its surprisingly low level of actin polymer. This special phenomenon might relate to the function of actin cytoskeleton in pollen tubes. Understanding the molecular mechanism underlying this special phenomenon requires careful analysis of actin-binding proteins that modulate actin dynamics directly. Recent biochemical and biophysical analyses of several highly conserved plant actin-binding proteins reveal unusual and unexpected properties, which emphasizes the importance of carefully analyzing their action mechanism and cellular activity. In this review, we highlight an actin monomer sequestering protein, a barbed end capping protein and an F-actin severing and dynamizing protein in plant. We propose that these proteins function in harmony to regulate actin dynamics and maintain the low level of actin polymer in pollen tubes.

Rapid, combinatorial analysis of membrane compartments in intact plants with a multicolor marker set.

Plant membrane compartments and trafficking pathways are highly complex, and are often distinct from those of animals and fungi. Progress has been made in defining trafficking in plants using transient expression systems. However, many processes require a precise understanding of plant membrane trafficking in a developmental context, and in diverse, specialized cell types. These include defense responses to pathogens, regulation of transporter accumulation in plant nutrition or polar auxin transport in development. In all of these cases a central role is played by the endosomal membrane system, which, however, is the most divergent and ill-defined aspect of plant cell compartmentation. We have designed a new vector series, and have generated a large number of stably transformed plants expressing membrane protein fusions to spectrally distinct, fluorescent tags. We selected lines with distinct subcellular localization patterns, and stable, non-toxic expression. We demonstrate the power of this multicolor 'Wave' marker set for rapid, combinatorial analysis of plant cell membrane compartments, both in live-imaging and immunoelectron microscopy. Among other findings, our systematic co-localization analysis revealed that a class of plant Rab1-homologs has a much more extended localization than was previously assumed, and also localizes to trans-Golgi/endosomal compartments. Constructs that can be transformed into any genetic background or species, as well as seeds from transgenic Arabidopsis plants, will be freely available, and will promote rapid progress in diverse areas of plant cell biology.

Redox Regulation in Photosynthetic Organisms: Signaling, Acclimation, and Practical Implications

Reactive oxygen species (ROS) have multifaceted roles in the orchestration of plant gene expression and gene-product regulation. Cellular redox homeostasis is considered to be an "integrator" of information from metabolism and the environment controlling plant growth and acclimation responses, as well as cell suicide events. The different ROS forms influence gene expression in specific and sometimes antagonistic ways. Low molecular antioxidants (e.g., ascorbate, glutathione) serve not only to limit the lifetime of the ROS signals but also to participate in an extensive range of other redox signaling and regulatory functions. In contrast to the low molecular weight antioxidants, the "redox" states of components involved in photosynthesis such as plastoquinone show rapid and often transient shifts in response to changes in light and other environmental signals. Whereas both types of "redox regulation" are intimately linked through the thioredoxin, peroxiredoxin, and pyridine nucleotide pools, they also act independently of each other to achieve overall energy balance between energy-producing and energy-utilizing pathways. This review focuses on current knowledge of the pathways of redox regulation, with discussion of the somewhat juxtaposed hypotheses of "oxidative damage" versus "oxidative signaling," within the wider context of physiological function, from plant cell biology to potential applications.

Plant neurobiology: from sensory biology, via plant communication, to social plant behavior

In plants, numerous parameters of both biotic and abiotic environments are continuously monitored. Specialized cells are evolutionary-optimized for effective translation of sensory input into developmental and motoric output. Importantly, diverse physical forces, influences, and insults induce immediate electric responses in plants. Recent advances in plant cell biology, molecular biology, and sensory ecology will be discussed in the framework of recently initiated new discipline of plant sciences, namely plant neurobiology.

Nicotiana benthamiana: Its History and Future as a Model for Plant–Pathogen Interactions

Nicotiana benthamiana is the most widely used experimental host in plant virology, due mainly to the large number of diverse plant viruses that can successfully infect it. Additionally, N. benthamiana is susceptible to a wide variety of other plant-pathogenic agents (such as bacteria, oomycetes, fungi, and so on), making this species a cornerstone of host-pathogen research, particularly in the context of innate immunity and defense signaling. Moreover, because it can be genetically transformed and regenerated with good efficiency and is amenable to facile methods for virus-induced gene silencing or transient protein expression, N. benthamiana is rapidly gaining popularity in plant biology, particularly in studies requiring protein localization, interaction, or plant-based systems for protein expression and purification. Paradoxically, despite being an indispensable research model, little is known about the origins, genetic variation, or ecology of the N. benthamiana accessions currently used by the research community. In addition to addressing these latter topics, the purpose of this review is to provide information regarding sources for tools and reagents that can be used to support research in N. benthamiana. Finally, we propose that N. benthamiana is well situated to become a premier plant cell biology model, particularly for the virology community, who as a group were the first to recognize the potential of this unique Australian native.

Cellulose microfibril deposition: coordinated activity at the plant plasma membrane

Plant cell wall production is a membrane-bound process. Cell walls are composed of cellulose microfibrils, embedded inside a matrix of other polysaccharides and glycoproteins. The cell wall matrix is extruded into the existing cell wall by exocytosis. This same process also inserts the cellulose synthase complexes into the plasma membrane. These complexes, the nanomachines that produce the cellulose microfibrils, move inside the plasma membrane leaving the cellulose microfibrils in their wake. Cellulose microfibril angle is an important determinant of cell development and of tissue properties and as such relevant for the industrial use of plant material. Here, we provide an integrated view of the events taking place in the not more than 100 nm deep area in and around the plasma membrane, correlating recent results provided by the distinct field of plant cell biology. We discuss the coordinated activities of exocytosis, endocytosis, and movement of cellulose synthase complexes while producing cellulose microfibrils and the link of these processes to the cortical microtubules.

Confocal microscopy and plant cell biology: A perfect match

The present short introduction to confocal microscopy in plant cell biology is meant to be a reference addressed to those who are approaching these studies. Optical and genetic techniques developed over the last years have revolutionised plant cell biology. They enable in vivo studies of cell organisation, mainly based on the use of confocal microscopy and derivatives of the Green Fluorescent Protein (GFP). Such fluorescent proteins are extremely useful tools for directly monitoring gene expression and protein localisation, and for selectively labelling sub-cellular structures. GFP-expressing plants can be directly examined by confocal microscopy to obtain high-resolution optical sections of intact tissues and to allow time-lapse observation of dynamic processes. The application of such approaches to the investigation of root cell responses during arbuscular mycorrhizal colonisation is discussed.

Potential regulation of gene expression in photosynthetic cells by redox and energy state: approaches towards better understanding

Photosynthetic electron transport is performed by a chain of redox components that are electrochemically connected in series. Its efficiency depends on the balanced action of the photosystems and on the interaction with the dark reaction. Plants are sessile and cannot escape from environmental conditions such as fluctuating illumination, limitation of CO(2) fixation by low temperatures, salinity, or low nutrient or water availability, which disturb the homeostasis of the photosynthetic process. Photosynthetic organisms, therefore, have developed various molecular acclimation mechanisms that maintain or restore photosynthetic efficiency under adverse conditions and counteract abiotic stresses. Recent studies indicate that redox signals from photosynthetic electron transport and reactive oxygen species (ROS) or ROS-scavenging molecules play a central role in the regulation of acclimation and stress responses. The underlying signalling network of photosynthetic redox control is largely unknown, but it is already apparent that gene regulation by redox signals is of major importance for plants. Signalling cascades controlling the expression of chloroplast and nuclear genes have been identified and dissection of the different pathways is advancing. Because of the direction of information flow, photosynthetic redox signals can be defined as a distinct class of retrograde signals in addition to signals from organellar gene expression or pigment biosynthesis. They represent a vital signal of mature chloroplasts that report their present functional state to the nucleus. Here we describe possible problems in the elucidation of redox signalling networks and discuss some aspects of plant cell biology that are important for developing suitable experimental approaches. The photosynthetic function of chloroplasts represents an important sensor that integrates various abiotic changes in the environment into corresponding molecular signals, which, in turn, regulate cellular activities to counterbalance the environmental changes or stresses.

Handbook of Plant Science

Handbook of Plant Science

Greetings from the new Editor-in-Chief

I am very pleased to take over the position of Editorin-Chief of Plant and Cell Physiology, the most prestigious and truly international journal focusing on physiology, biotechnology, biophysics, chemistry, genetics, molecular biology, gene engineering and cell biology of plants and microorganisms. I will start by saying that I will do my best to improve the quality of the journal and hope to maintain the journal’s integrity and to move it forward on the path that Professor Hiroo Fukuda, the previous Editor-in-Chief, has firmly established. Since its inception, Plant and Cell Physiology has contributed significantly to the advancement of plant science. The impact factor of Plant and Cell Physiology has continued to grow for several years. In 2005, the impact factor was 3.317. In 2006, the impact factor increased to 3.324, not only positioning Plant and Cell Physiology in second place among journals of all scientific fields in Japan, but also ranking 15th among 147 plant science journals in the world. To improve the quality of Plant and Cell Physiology, we welcome submissions from non-society members as well as society members. All manuscripts should be submitted in electronic form via Manuscript Central, our online submission system. All accepted papers will be published online as an Advanced Access within 2–3 days after production files are received. In the fastest case, Rapid papers will be printed within 40 days of acceptance. The time lag from acceptance to publication will be much less compared with regular papers in Plant and Cell Physiology, which are published on average within 70 days. Furthermore, Plant and Cell Physiology offers an optional Open Access (OA) publication, with a full cost of £1,500. OA means that papers are freely available online immediately after publication and increases the chance of citations over papers in publications kept under subscription control. We encourage all authors to take advantage of OA publication. Thanks to the united efforts of a great number of people including the Japanese Society of Plant Physiologists (JSPP), Oxford University Press (OUP) and the Nakanishi Printing Company, Plant and Cell Physiology has advanced rapidly. In my view, it does not require a major overhaul, but the journal could benefit from some changes for further enhancement. Therefore, for 2008, the editorial board of Plant and Cell Physiology has approved several main plans. In order to improve the quality of the journal, we will cancel color figure charges that were considered rather expensive. Authors will be able to publish all color figures free of charge from Volume 49, Issue 4 in 2008. To enable this change, the manuscript handling charge and excess page charge will be raised slightly as follows: members of the society will be charged a handling fee of 10,000 yen, and non-member authors will be charged 20,000 yen. The excess page charge will be 20,000 yen per page regardless of society membership. Please refer to updated Instruction to Authors at http://www.oxfordjournals.org/pcp/for_authors/index. html. The current color charge is 40,000 yen per figure. This means that non-member authors who publish a color figure are paying 50,000 yen in total at present. However, with the new author charge scheme, the same authors will only be charged 20,000 yen. In the future, we will aim to create a more easily viewable Website and to redesign the cover. We hope that these approaches will put the journal in an excellent position for future success. I look forward to working with all of you: submitting authors, reviewers, the journal’s excellent staff, editors, associate editors and, last but not least, readers. Plant Cell Physiol. 49(1): 1 (2008) doi:10.1093/pcp/pcm166, available online at www.pcp.oxfordjournals.org The Author 2008. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For permissions, please email: journals.permissions@oxfordjournals.org

A sequence-anchored genetic linkage map for the moss, Physcomitrella patens.

The moss Physcomitrella patens is a model for the study of plant cell biology and, by virtue of its basal position in land plant phylogeny, for comparative analysis of the evolution of plant gene function and development. It is ideally suited for ‘reverse genetic’ analysis by virtue of its outstanding ability to undertake targeted transgene integration by homologous recombination. However, gene identification through mutagenesis and map-based cloning has hitherto not been possible, due to the lack of a genetic linkage map. Using molecular markers [amplified fragment length polymorphisms (AFLP) and simple sequence repeats (SSR)] we have generated genetic linkage maps for Physcomitrella. One hundred and seventy-nine gene-specific SSR markers were mapped in 46 linkage groups, and 1574 polymorphic AFLP markers were identified. Integrating the SSR- and AFLP-based maps generated 31 linkage groups comprising 1420 markers. Anchorage of the integrated linkage map with gene-specific SSR markers coupled with computational prediction of AFLP loci has enabled its correspondence with the newly sequenced Physcomitrella genome. The generation of a linkage map densely populated with molecular markers and anchored to the genome sequence now provides a resource for forward genetic interrogation of the organism and for the development of a pipeline for the map-based cloning of Physcomitrella genes. This will radically enhance the potential of Physcomitrella for determining how gene function has evolved for the acquisition of complex developmental strategies within the plant kingdom.

Plant cell biology—get your networks together

Plant cell biology—get your networks together

Citations

Citations

How Many Genes are Needed to Make a Pollen Tube? Lessons from Transcriptomics

Pollen is the male gametophyte of higher plants. Upon pollination, it germinates and develops into a fast-growing cytoplasmic extension, the pollen tube, which ultimately delivers the sperm into the ovary. The biological relevance of its role, and the uniqueness of this kind of cellular organization, have made pollen the focus of many approaches, and it stands today as one of the best-known models in plant cell biology. In contrast, the genetic background of its development has been until recently largely unknown. Some genes involved have been described and a few functional mutants have been characterized, but only to a limited extent and allowing only a limited understanding of the regulatory mechanisms. Yet, being a relatively simple organ (2 or 3 cells), pollen stands as an excellent target for molecular-biology-based approaches. Recent studies on Arabidopsis thaliana have characterized the transcriptional profile of pollen grains and microgametogenesis in comparison to sporophytic tissues. They underline the unique characteristics of pollen, not only in terms of a strongly reduced set of genes being expressed, but also in terms of the functions of the proteins encoded and the pathways they are involved in. These approaches have expanded the number of genes with known expression in pollen from a few hundred to nearly eight thousand. While for the first time allowing systems and/or gene-family approaches, this information also expands dramatically the possibility of hypothesis-driven experimentation based on specific gene function predictions. Recent studies reveal this to be the case in, for example, transcriptional regulation, cell-cycle progression and gene-silencing mechanisms in mature pollen.

Ethylene-promoted elongation: an adaptation to submergence stress.

A sizeable minority of taxa is successful in areas prone to submergence. Many such plants elongate with increased vigour when underwater. This helps to restore contact with the aerial environment by shortening the duration of inundation. Poorly adapted species are usually incapable of this underwater escape. Evidence implicating ethylene as the principal factor initiating fast underwater elongation by leaves or stems is evaluated comprehensively along with its interactions with other hormones and gases. These interactions make up a sequence of events that link the perception of submergence to a prompt acceleration of extension. The review encompasses whole plant physiology, cell biology and molecular genetics. It includes assessments of how submergence threatens plant life and of the extent to which the submergence escape demonstrably improves the likelihood of survival. Experimental testing over many years establishes ethylene-promoted underwater extension as one of the most convincing examples of hormone-mediated stress adaptation by plants. The research has utilized a wide range of species that includes numerous angiosperms, a fern and a liverwort. It has also benefited from detailed physiological and molecular studies of underwater elongation by rice (Oryza sativa) and the marsh dock (Rumex palustris). Despite complexities and interactions, the work reveals that the signal transduction pathway is initiated by the simple expediency of physical entrapment of ethylene within growing cells by a covering of water.

Pathogen virulence factors as molecular probes of basic plant cellular functions.

To successfully colonize plants, pathogens have evolved a myriad of virulence factors that allow them to manipulate host cellular pathways in order to gain entry into, multiply and move within, and eventually exit the host for a new infection cycle. In the past few years, substantial progress has been made in characterizing the host targets of viral and bacterial virulence factors, providing unique insights into basic plant cellular processes such as gene silencing, vesicle trafficking, hormone signaling, and innate immunity. Identification of the host targets of additional pathogen virulence factors promises to continue shedding light on fundamental cellular mechanisms in plants, thus enhancing our understanding of plant signaling, metabolism, and cell biology.

Variable‐angle epifluorescence microscopy: a new way to look at protein dynamics in the plant cell cortex

Live-cell microscopy imaging of fluorescent-tagged fusion proteins is an essential tool for cell biologists. Total internal reflection fluorescence microscopy (TIRFM) has joined confocal microscopy as a complementary system for the imaging of cell surface protein dynamics in mammalian and yeast systems because of its high temporal and spatial resolution. Here we present an alternative to TIRFM, termed variable-angle epifluorescence microscopy (VAEM), for the visualization of protein dynamics at or near the plasma membrane of plant epidermal cells and root hairs in whole, intact seedlings that provides high-signal, low-background and near real-time imaging. VAEM uses highly oblique subcritical incident angles to decrease background fluorophore excitation. We discuss the utilities and advantages of VAEM for imaging of fluorescent fusion-tagged marker proteins in studying cortical cytoskeletal and membrane proteins. We believe that the application of VAEM will be an invaluable imaging tool for plant cell biologists.

A multicolored set of in vivo organelle markers for co‐localization studies in Arabidopsis and other plants

Genome sequencing has resulted in the identification of a large number of uncharacterized genes with unknown functions. It is widely recognized that determination of the intracellular localization of the encoded proteins may aid in identifying their functions. To facilitate these localization experiments, we have generated a series of fluorescent organelle markers based on well-established targeting sequences that can be used for co-localization studies. In particular, this organelle marker set contains indicators for the endoplasmic reticulum, the Golgi apparatus, the tonoplast, peroxisomes, mitochondria, plastids and the plasma membrane. All markers were generated with four different fluorescent proteins (FP) (green, cyan, yellow or red FPs) in two different binary plasmids for kanamycin or glufosinate selection, respectively, to allow for flexible combinations. The labeled organelles displayed characteristic morphologies consistent with previous descriptions that could be used for their positive identification. Determination of the intracellular distribution of three previously uncharacterized proteins demonstrated the usefulness of the markers in testing predicted subcellular localizations. This organelle marker set should be a valuable resource for the plant community for such co-localization studies. In addition, the Arabidopsis organelle marker lines can also be employed in plant cell biology teaching labs to demonstrate the distribution and dynamics of these organelles.

Celebrating Plant Cells: A Special Issue on Plant Cell Biology

Celebrating Plant Cells: A Special Issue on Plant Cell Biology