Terrestrial plant and soil organic carbon stocks are critical for regulating climate change, enhancing soil fertility, and supporting biodiversity. While a global-scale decoupling between plant and soil organic carbon has been documented, the hotspots and interconnections between these two carbon compartments across Africa, the second-largest continent on the planet, have been significantly overlooked. Here, we have compiled over 10,000 existing soil organic carbon observations to generate a high-resolution map, illustrating the distribution pattern of soil organic carbon in Africa. We then showed that above- and below-ground plant carbon are significantly and positively correlated with soil organic carbon across Africa. Both soil and plant carbon compartments shared major hotspots in the tropical regions. Our study provides critical insights into the spatial distribution of carbon hotspots across Africa, essential for soil conservation and safeguarding terrestrial carbon stocks amidst the challenges of climate change.