Planktonic Microbial Communities Research Articles

Diverse Microorganisms in Sediment and Groundwater Are Implicated in Extracellular Redox Processes Based on Genomic Analysis of Bioanode Communities.

Extracellular electron transfer (EET) between microbes and iron minerals, and syntrophically between species, is a widespread process affecting biogeochemical cycles and microbial ecology. The distribution of this capacity among microbial taxa, and the thermodynamic controls on EET in complex microbial communities, are not fully known. Microbial electrochemical cells (MXCs), in which electrodes serve as the electron acceptor or donor, provide a powerful approach to enrich for organisms capable of EET and to study their metabolism. We used MXCs coupled with genome-resolved metagenomics to investigate the capacity for EET in microorganisms present in a well-studied aquifer near Rifle, CO. Electroactive biofilms were established and maintained for almost 4 years on anodes poised mostly at −0.2 to −0.25 V vs. SHE, a range that mimics the redox potential of iron-oxide minerals, using acetate as the sole carbon source. Here we report the metagenomic characterization of anode-biofilm and planktonic microbial communities from samples collected at timepoints across the study period. From two biofilm and 26 planktonic samples we reconstructed draft-quality and near-complete genomes for 84 bacteria and 2 archaea that represent the majority of organisms present. A novel Geobacter sp. with at least 72 putative multiheme c-type cytochromes (MHCs) was the dominant electrode-attached organism. However, a diverse range of other electrode-associated organisms also harbored putative MHCs with at least 10 heme-binding motifs, as well as porin-cytochrome complexes and e-pili, including Actinobacteria, Ignavibacteria, Chloroflexi, Acidobacteria, Firmicutes, Beta- and Gammaproteobacteria. Our results identify a small subset of the thousands of organisms previously detected in the Rifle aquifer that may have the potential to mediate mineral redox transformations.

Intermittent electro field regulated mutualistic interspecies electron transfer away from the electrodes for bioenergy recovery from wastewater

Lately, extracellular electron transfer (EET) is widely disclosed on the surface of the bioelectrodes, and conductive (bio)carriers involved in anaerobic biodegradation/biosynthesis. By electrostimulation, microbial consortia colonize the electrodes and accelerate substrate (waste/wastewater) metabolization on the bioanode or biosynthesize value-added products (methane, acetate, etc.) on the biocathode. However, the connections and contributions of planktonic microbial communities have not been effectually understood. Herein, electromethanogenesis were comprehensively investigated in response to different driving-force modes: intermittent electric field applied by manual on-off or natural solar power and continuous electrical field. Intermittent modes implied preferable electron transfer efficiency, higher methane yield and energy recovery efficiencies from wastewater by the microbes in the bulk solutions. Microbial community analysis revealed that less electroactive microorganisms and acetotrophic methanogens in the bulk solutions were accommodated under the intermittent modes than the continuous electrical field, whereas more fermentative bacteria and hydrogenotrophic methanogens evolved in the intermittent driving modes, implying that the interspecies electron transfer both on and away from the electrodes were favorably regulated. Redundancy and network analysis proved that more complicated ecological interactions were shown in the bulk solutions with the periodic on/off of electrical field. These results hinted that the electrostimulation effectively regulated EET bacteria, even in the bulk solutions, while more efficient electron flow to methane through interspecies electron transfer was developed during the intermittent driving regulation.

Low Host Abundance and High Temperature Determine Switching from Lytic to Lysogenic Cycles in Planktonic Microbial Communities in a Tropical Sea (Red Sea).

The lytic and lysogenic life cycles of marine phages are influenced by environmental conditions such as solar radiation, temperature, and host abundance. Temperature can regulate phage infection, but its role is difficult to discern in oligotrophic waters where there is typically low host abundance and high temperatures. Here, we study the temporal variability of viral dynamics and the occurrence of lysogeny using mitomycin C in a eutrophic coastal lagoon in the oligotrophic Red Sea, which showed strong seasonality in terms of temperature (22.1–33.3 °C) and large phytoplankton blooms. Viral abundances ranged from 2.2 × 106 to 1.5 × 107 viruses mL−1 and were closely related to chlorophyll a (chl a) concentration. Observed high virus-to-bacterium ratio (VBR) (4–79; 16 ± 4 (SE)) suggests that phages exerted a tight control of their hosts as indicated by the significant decrease in bacterial abundance with increasing virus concentration. Heterotrophic bacterial abundance also showed a significant decrease with increasing temperature. However, viral abundance was not related to temperature changes and the interaction of water temperature, suggesting an indirect effect of temperature on decreased host abundance, which was observed at the end of the summertime. From the estimated burst size (BS), we observed lysogeny (undetectable to 29.1%) at low percentages of 5.0% ± 1.2 (SE) in half of the incubations with mitomycin C, while it increased to 23.9% ± 2.8 (SE) when the host abundance decreased. The results suggest that lytic phages predominate, switching to a moderate proportion of temperate phages when the host abundance reduces.

On giant shoulders: how a seamount affects the microbial community composition of seawater and sponges

Abstract. Seamounts represent ideal systems to study the influence and interdependency of environmental gradients at a single geographic location. These topographic features represent a prominent habitat for various forms of life, including microbiota and macrobiota, spanning benthic as well as pelagic organisms. While it is known that seamounts are globally abundant structures, it still remains unclear how and to which extent the complexity of the sea floor is intertwined with the local oceanographic mosaic, biogeochemistry, and microbiology of a seamount ecosystem. Along these lines, the present study aimed to explore whether and to what extent seamounts can have an imprint on the microbial community composition of seawater and of sessile benthic invertebrates, sponges. For our high-resolution sampling approach of microbial diversity (16S rRNA gene amplicon sequencing) along with measurements of inorganic nutrients and other biogeochemical parameters, we focused on the Schulz Bank seamount ecosystem, a sponge ground ecosystem which is located on the Arctic Mid-Ocean Ridge. Seawater samples were collected at two sampling depths (mid-water, MW, and near-bed water, BW) from a total of 19 sampling sites. With a clustering approach we defined microbial microhabitats within the pelagic realm at Schulz Bank, which were mapped onto the seamount's topography and related to various environmental parameters (such as suspended particulate matter, SPM; dissolved inorganic carbon, DIC; silicate, SiO4-; phosphate, PO43-; ammonia, NH4+; nitrate, NO32-; nitrite, NO2-; depth; and dissolved oxygen, O2). The results of our study reveal a “seamount effect” (sensu stricto) on the microbial mid-water pelagic community at least 200 m above the sea floor. Further, we observed a strong spatial heterogeneity in the pelagic microbial landscape across the seamount, with planktonic microbial communities reflecting oscillatory and circulatory water movements, as well as processes of bentho-pelagic coupling. Depth, NO32-, SiO4-, and O2 concentrations differed significantly between the determined pelagic microbial clusters close to the sea floor (BW), suggesting that these parameters were presumably linked to changes in microbial community structures. Secondly, we assessed the associated microbial community compositions of three sponge species along a depth gradient of the seamount. While sponge-associated microbial communities were found to be mainly species-specific, we also detected significant intra-specific differences between individuals, depending on the pelagic near-bed cluster they originated from. The variable microbial phyla (i.e. phyla which showed significant differences across varying depth, NO32-, SiO4-, O2 concentrations, and different from local seawater communities) were distinct for every sponge species when considering average abundances per species. Variable microbial phyla included representatives of both those taxa traditionally counted for the variable community fraction and taxa counted traditionally for the core community fraction. Microbial co-occurrence patterns for the three examined sponge species Geodia hentscheli, Lissodendoryx complicata, and Schaudinnia rosea were distinct from each other. Over all, this study shows that topographic structures such as the Schulz Bank seamount can have an imprint (seamount effect sensu lato) on both the microbial community composition of seawater and sessile benthic invertebrates such as sponges by an interplay between the geology, physical oceanography, biogeochemistry, and microbiology of seamounts.

Effect of Azamethiphos on enzymatic activity and metabolic fingerprints of marine microbial communities from the water column

Salmon production in Chile has increased significantly since the 1990s. However, there have been significant economic losses owing to outbreaks of Caligus rogercresseyi. Pesticides, among them Azamethiphos, are used to mitigate the impact of this sea louse. Azamethiphos can affect non-target species living near salmon farms such as microbial plankton, although there is little information about this. The general objective of this study was to determine the effect of different concentrations of the pesticide Azamethiphos on the metabolism of microbial plankton communities (<100 μm) in two contrasting zones, one without salmon farming and the other with a high level of aquaculture activity. Several methodological approaches were used, including the enzymatic activity of β-glucosidase and malate dehydrogenase (MDH), fingerprinting techniques (EcoPlates for bacteria and FF microplate for marine fungi) and the estimation of microbial aerobic respiration. We found greater degradation of the pesticide Azamethiphos in the salmon culture zone (~72.4%) than in an area not previously used in salmon production (~26.1%). The response of microbial β-glucosidase activity to Azamethiphos is highly variable, but there is a tendency toward more activity in the smaller size fractions (5–25 μm and 0.22–3 μm) when exposed to high Azamethiphos concentrations. We also detected a highly variable response in microbial MDH activity. The most widely used carbon substrates by bacterioplankton and marine fungi are those related to carbohydrate metabolism. We also found increased use of carboxylic acids and amino acids in the treatments with higher concentrations of Azamethiphos. Enzyme activity, together with metabolic fingerprints, could be used as an indicator of perturbations in marine microbial communities.

Depth-Differentiation and Seasonality of Planktonic Microbial Assemblages in the Monterey Bay Upwelling System.

Coastal upwelling regions are hotspots of biological productivity, supporting diverse communities of microbial life and metabolisms. Monterey Bay (MB), a coastal ocean embayment in central California, experiences seasonal upwelling of cold, nutrient-rich waters that sustain episodes of high phytoplankton production in surface waters. While productivity in surface waters is intimately linked to metabolisms of diverse communities of Archaea and Bacteria, a comprehensive understanding of the microbial community in MB is missing thus far, particularly in relation to the distinct hydrographic seasons characteristic of the MB system. Here we present the results of a 2-year microbial time-series survey in MB, investigating community composition and structure across spatiotemporal gradients. In deciphering these patterns, we used unique sequence variants (SVs) of the 16S rRNA gene (V4–V5 region), complemented with metagenomes and metatranscriptomes representing multiple depth profiles. We found clear depth-differentiation and recurring seasonal abundance patterns within planktonic communities, particularly when analyzed at finer taxonomic levels. Compositional changes were more pronounced in the upper 0–40 m of the water column, whereas deeper depths were characterized by temporally stable populations. In accordance with the dynamic nutrient profiles, the system appears to change from a Bacteroidetes- and Rhodobacterales-dominated upwelling period to an oceanic season dominated by oligotrophic groups such as SAR11 and picocyanobacteria. The cascade of environmental changes brought about by upwelling and relaxation events thus impacts microbial community structure in the bay, with important implications for the temporal variability of nutrient and energy fluxes within the MB ecosystem. Our observations emphasize the need for continued monitoring of planktonic microbial communities in order to predict and manage the behavior of this sensitive marine sanctuary ecosystem, over projected intensification of upwelling in the region.

Biofilm and planktonic microbial communities in highly acidic soil (pH &lt; 3) in the Soos National Nature Reserve, Czech Republic

Biofilm formation is a typical life strategy used by microorganisms populating acidic water systems. The same strategy might be used by microbes in highly acidic soils that are, however, neglected in this regard. In the present study, the microbial community in such highly acidic soil in the Soos National Nature Reserve (Czech Republic) has been investigated using high-throughput DNA sequencing and the organisms associated with biofilm life mode and those preferring planktonic life were distinguished using the biofilm trap technique. Our data show the differences between biofilm and planktonic microbiota fraction, although the majority of the organisms were capable of using both life modes. The by far most abundant prokaryotic genus was Acidiphilium and fungi were identified among the most abundant eukaryotic elements in biofilm formations. On the other hand, small flagellates from diverse taxonomical groups predominated in plankton. The application of cellulose amendment as well as the depth of sampling significantly influenced the composition of the detected microbial community.

Metagenomics Uncovers a Core SAR11 Population in Brackish Surface Waters of the Baltic Sea

The Baltic Sea represents one of the largest brackish ecosystems where various environmental factors control dynamic seasonal shifts in the structure, diversity, and function of the planktonic microbial communities. In this study, despite seasonal fluctuations, several bacterial populations (&lt;2% of the total OTUs) that are highly dominant (25% of relative abundance) and highly frequently occurring (&gt;85% of occurrence) over four seasons were identified. Mathematical models using occurrence frequency and relative abundance data were able to describe community assembly persisting over time. Further, this work uncovered one of the core bacterial populations phylogenetically affiliated to SAR11 subclade IIIa. The analysis of the hypervariable region of 16S rRNA gene and single copy housekeeping genes recovered from metagenomic datasets suggested that the population was unexpectedly evolutionarily closely related to those inhabiting a mesosaline lacustrine ecosystem rather than other marine/coastal members. Our metagenomic results further revealed that the newly-identified population was the major driver facilitating the seasonal shifts in the overall community structure over the brackish waters of the Baltic Sea. The core community uncovered in this study supports the presence of a brackish water microbiome distinguishable from other marine and freshwater counterparts and will be a useful sentinel for monitoring local/global environmental changes posed on brackish surface waters.

Genomic adaptations in information processing underpin trophic strategy in a whole-ecosystem nutrient enrichment experiment.

Several universal genomic traits affect trade-offs in the capacity, cost, and efficiency of the biochemical information processing that underpins metabolism and reproduction. We analyzed the role of these traits in mediating the responses of a planktonic microbial community to nutrient enrichment in an oligotrophic, phosphorus-deficient pond in Cuatro Ciénegas, Mexico. This is one of the first whole-ecosystem experiments to involve replicated metagenomic assessment. Mean bacterial genome size, GC content, total number of tRNA genes, total number of rRNA genes, and codon usage bias in ribosomal protein sequences were all higher in the fertilized treatment, as predicted on the basis of the assumption that oligotrophy favors lower information-processing costs whereas copiotrophy favors higher processing rates. Contrasting changes in trait variances also suggested differences between traits in mediating assembly under copiotrophic versus oligotrophic conditions. Trade-offs in information-processing traits are apparently sufficiently pronounced to play a role in community assembly because the major components of metabolism-information, energy, and nutrient requirements-are fine-tuned to an organism's growth and trophic strategy.

Mobile resistome of human gut and pathogen drives anthropogenic bloom of antibiotic resistance

BackgroundThe impact of human activities on the environmental resistome has been documented in many studies, but there remains the controversial question of whether the increased antibiotic resistance observed in anthropogenically impacted environments is just a result of contamination by resistant fecal microbes or is mediated by indigenous environmental organisms. Here, to determine exactly how anthropogenic influences shape the environmental resistome, we resolved the microbiome, resistome, and mobilome of the planktonic microbial communities along a single river, the Han, which spans a gradient of human activities.ResultsThe bloom of antibiotic resistance genes (ARGs) was evident in the downstream regions and distinct successional dynamics of the river resistome occurred across the spatial continuum. We identified a number of widespread ARG sequences shared between the river, human gut, and pathogenic bacteria. These human-related ARGs were largely associated with mobile genetic elements rather than particular gut taxa and mainly responsible for anthropogenically driven bloom of the downstream river resistome. Furthermore, both sequence- and phenotype-based analyses revealed environmental relatives of clinically important proteobacteria as major carriers of these ARGs.ConclusionsOur results demonstrate a more nuanced view of the impact of anthropogenic activities on the river resistome: fecal contamination is present and allows the transmission of ARGs to the environmental resistome, but these mobile genes rather than resistant fecal bacteria proliferate in environmental relatives of their original hosts.-EAr6o8ZqqRG-rMJXcUMDBVideo abstract.

Response of pico-nano-eukaryotes to inorganic and organic nutrient additions

Organic nutrient loading in coastal waters has considerably increased due to anthropogenic activities over the last decades. In particular, the increase in the proportion of organic vs. inorganic nitrogen may have an impact on microbial plankton communities, particularly within the small size classes, where mixotrophy is likely to be widespread. Here we explore the change in taxonomic composition of small eukaryotes (<20 μm) populating a productive coastal system in response to inorganic and/or organic nutrient amendments using 18S rRNA gene sequencing. Major changes in the community were observed in the mixed treatment, containing both inorganic and organic nutrients, which mostly affected phytoplankton taxa. Adding mixed nutrients had a positive effect on pigmented groups, when compared to additions of inorganic nutrients. The responding pigmented groups included dinoflagellates, cryptophyceans, chrysophyceans, bolidophyceans or dictyochophyceans, which comprise mixotrophic species, but also groups that are considered to be strictly autotrophs, such as diatoms or mamiellophyceans. Our results highlight the importance of organic nutrients for growth of small phytoplankton. The combination of both, autotrophic and heterotrophic capabilities, is possibly an advantage for small phytoplankton to thrive when inorganic nutrients or light are limiting or suboptimal.

Microbial Composition and Variability of Natural Marine Planktonic and Biofouling Communities From the Bay of Bengal.

The Bay of Bengal (BoB) is the largest bay in the world and presents a unique marine environment that is subjected to severe weather, a distinct hydrographic regime and a large anthropogenic footprint. Despite these features and the BoB’s overall economic significance, this ecosystem and its microbiome remain among the most underexplored in the world. In this study, amplicon-based microbial profiling was used to assess the bacterial, archaeal, and micro-eukaryotic content of unperturbed planktonic and biofilm/biofouling communities within the BoB. Planktonic microbial communities were collected during the Southwest monsoon season from surface (2 m), subsurface (75 m), and deep-sea (1000 m) waters from six south-central BoB locations and were compared to concomitant mature biofouling communities from photic-zone subsurface moorings (∼75 m). The results demonstrated vertical stratification of all planktonic communities with geographic variations disappearing in the deep-sea environment. Planktonic microbial diversity was found to be driven by different members of the community, with the most dominant phylotypes driving the diversity of the photic zone and rarer species playing a more influential role within the deep-sea. Geographic variability was not observed in the co-located biofouling microbiomes, but community composition and variability was found to be driven by depth and the presence of macro-fouling and photosynthetic organisms. Overall, these results provide much needed baselines for longitudinal assessments that can be used to monitor the health and evolution of this dynamic and critically important marine environment.

Ultra‐small and abundant: Candidate phyla radiation bacteria are potential catalysts of carbon transformation in a thermokarst lake ecosystem

AbstractThe candidate phyla radiation (CPR) is a diverse group of uncultured bacterial lineages with poorly understood metabolic functions. CPR bacteria can represent a large proportion of the total planktonic microbial community in subarctic thermokarst lakes, but their functional roles remain unexplored. We applied sequential water filtration and metagenomic shotgun sequencing to a peatland permafrost thaw lake, and found high proportions of CPR bacteria in both summer and winter (&gt; 40% of 16S rRNA reads in the 0.02–0.22 μm pore‐size fraction). The metagenome‐assembled genomes of CPR bacteria representatives showed capacities to degrade and ferment permafrost‐ and peatland‐derived organic matter. Potential products of their metabolic activities included acetate, CO2, and hydrogen, implying a syntrophic relationship with other community members, including methanogens and methanotrophs. The results indicate biogeochemical interdependencies in organic matter utilization within thermokarst microbial communities, with CPR members playing a key intermediate role in carbon and methane cycling.

Characteristics of microbial eukaryotic community recovery in eutrophic water by using ecological floating beds

Ecological floating beds can rapidly remove nutrients (nitrogen and phosphorus) from eutrophic water, but we still know little about whether this process can simultaneously recover microbial eukaryotic communities. To fill this gap, planktonic microbial eukaryotic communities were investigated using 18S rRNA high-throughput gene sequencing during nutrient removal by floating beds of Canna indica L. We found that nutrient concentrations were high in both the control and treatment groups during period 1 (days 0–5) but rapidly decreased in the treatment group during period 2 (days 6–9) and period 3 (days 10–18). However, the microbial eukaryotic species richness and community compositions were similar between the control and treatment groups during periods 1 and 2 but showed small differences during period 3. The microbial eukaryotic co-occurrence networks between the control and treatment groups also showed similar degree centrality and interconnected eukaryotic members. We found that some abundant fungi species significantly responded to nutrient variations, but a large number of abundant ciliates were insensitive to nutrient removal. Our findings suggest that ecological floating beds can rapidly remove nutrients in eutrophic waters but that it is difficult to quickly and simultaneously improve microbial eukaryotic communities. This result reveals the critical influence of nutrient pollution on aquatic ecosystems and therefore on long-term and comprehensive aquatic habitat restoration, as aquatic macrophyte recoveries should be conducted after nutrient controls have been implemented.

Trophic Status Is Associated With Community Structure and Metabolic Potential of Planktonic Microbiota in Plateau Lakes.

Microbes in various aquatic ecosystems play a key role in global energy fluxes and biogeochemical processes. However, the detailed patterns on the functional structure and the metabolic potential of microbial communities in freshwater lakes with different trophic status remain to be understood. We employed a metagenomics workflow to analyze the correlations between trophic status and planktonic microbiota in freshwater lakes on Yun-Gui Plateau, China. Our results revealed that microbial communities in the eutrophic and mesotrophic-oligotrophic lake ecosystems harbor distinct community structure and metabolic potential. Cyanobacteria were dominant in the eutrophic ecosystems, mainly driving the processes of aerobic respiration, fermentation, nitrogen assimilation, nitrogen mineralization, assimilatory sulfate reduction and sulfur mineralization in this ecosystem group. Actinobacteria, Proteobacteria (Alpha-, Beta-, and Gammaproteobacteria), Verrucomicrobia and Planctomycetes, occurred more often in the mesotrophic-oligotrophic ecosystems than those in the eutrophic ecosystems, and these taxa potentially mediate the above metabolic processes. In these two groups of ecosystems, a difference in the abundance of functional genes involved in carbohydrate metabolism, energy metabolism, glycan biosynthesis and metabolism, and metabolism of cofactors and vitamins significantly contribute to the distinct functional structure of microbiota from surface water. Furthermore, the microbe-mediated metabolic potentials for carbon, nitrogen and sulfur transformation showed differences in the two ecosystem groups. Compared with the mesotrophic-oligotrophic ecosystems, planktonic microbial communities in the eutrophic ecosystems showed higher potential for aerobic carbon fixation, fermentation, methanogenesis, anammox, denitrification, and sulfur mineralization, but they showed lower potential for aerobic respiration, CO oxidation, nitrogen fixation, and assimilatory sulfate reduction. This study offers insights into the relationships of trophic status to planktonic microbial community structure and its metabolic potential, and identifies the main taxa responsible for the biogeochemical cycles of carbon, nitrogen and sulfur in freshwater lake environments.

Influence of a biofilm bioreactor on water quality and microbial communities in a hypereutrophic urban river

ABSTRACT Biofilms play an important role in degradation, transformation and assimilation of anthropogenic pollutants in aquatic ecosystems. In this study, we assembled a tubular bioreactor containing a biofilm substrate and aeration device, which was introduced into mesocosms to explore the effects of bioreactor on physicochemical and microbial characteristics of a hypereutrophic urban river. The biofilm bioreactor greatly improved water quality, especially by decreasing dissolved inorganic nitrogen (DIN) concentrations, suggesting that biofilms were the major sites of nitrification and denitrification with an oxygen concentration gradient. The biofilm bioreactor increased the abundance of planktonic bacteria, whereas diversity of the planktonic microbial community decreased. Sequencing revealed that Proteobacteria, Bacteroidetes, Planctomycetes, and Actinobacteria were the four predominant phyla in the planktonic microbial community, and the presence of the biofilm bioreactor increased the relative abundance of Proteobacteria. Variations in microbial communities were most strongly affected by the presence of the biofilm bioreactor, as indicated by principal component analysis (PCA) and redundancy analysis (RDA). This study provides valuable insights into changes in ecological characteristics associated with self-purification processes in hypereutrophic urban rivers, and may be of important for the application of biofilm bioreactor in natural urban river.

The fungicide azoxystrobin promotes freshwater cyanobacterial dominance through altering competition

BackgroundSharp increases in food production worldwide are attributable to agricultural intensification aided by heavy use of agrochemicals. This massive use of pesticides and fertilizers in combination with global climate change has led to collateral damage in freshwater systems, notably an increase in the frequency of harmful cyanobacterial blooms (HCBs). The precise mechanisms and magnitude of effects that pesticides exert on HCBs formation and proliferation have received little research attention and are poorly constrained.ResultsWe found that azoxystrobin (AZ), a common strobilurin fungicide, can favor cyanobacterial growth through growth inhibition of eukaryotic competitors (Chlorophyta) and possibly by inhibiting cyanobacterial parasites (fungi) as well as pathogenic bacteria and viruses. Meta-transcriptomic analyses identified AZ-responsive genes and biochemical pathways in eukaryotic plankton and bacteria, potentially explaining the microbial effects of AZ.ConclusionsOur study provides novel mechanistic insights into the intertwined effects of a fungicide and eutrophication on microbial planktonic communities and cyanobacterial blooms in a eutrophic freshwater ecosystem. This knowledge may prove useful in mitigating cyanobacteria blooms resulting from agricultural intensification.

Response of the photosynthetic activity and biomass of the phytoplankton community to increasing nutrients during cyanobacterial blooms in Meiliang Bay, Lake Taihu

Nutrient enrichment facilitates algal outbreaks in eutrophic shallow lakes. To further understand the influence of various inorganic nutrient forms on cyanobacterial blooms, a nitrate (NO3 ), ammonium (NH4 ), and orthophosphate (PO4 ) amendment experiment was conducted in a large shallow lake of China (Lake Taihu) during summer. The results showed that the photosynthetic performance of phytoplankton responded more positively to phosphorus (P) than nitrogen (N), and NH4 addition stimulated higher algal photosynthetic activities in P-enriched waters. Individual inorganic N or PO4 addition significantly activated cyanobacteria and green algae. Meanwhile, the N plus P amendment promoted higher biomass of the planktonic microbial community, and the dual addition of NH4 +PO4 yielded the highest chlorophyll a concentration. NH4 additions provisionally promoted higher green algae than cyanobacteria biomass in the beginning, while cyanobacteria dominated again with increasing NH4 :PO4 ratios. These results revealed that increasing ammonium would enhance the increase in phytoplankton biomass in advance and prolong the duration of algal blooms. Hence, based on the control of P loading, the reduction in external inorganic N focusing on ammonium sources (such as ammonia N fertilizer) at the watershed scale would help to alleviate eutrophication and cyanobacterial blooms over the long term in Lake Taihu. PRACTITIONER POINTS: Ammonium addition stimulated higher algal photosynthetic activities in P-enriched waters. Individual inorganic N or PO4 addition significantly activated cyanobacteria and green algae. The dual addition of NH4 +PO4 yielded the highest chlorophyll a concentration. Increasing NH4 would enhance the increase in phytoplankton biomass in advance and prolong the duration of cyanobacterial blooms.

Comparison of flow regimes on biocorrosion of steel pipe weldments: Fluid characterization and pitting analysis

Pitting corrosion in microalloyed steel and its welded joints occur in fabricated structures, such as pipelines for oil and gas transport, which are exposed to corrosive environments. Although the formation of the pits consumes only a relatively small mass of material, the role of the pits as defect sites for crack initiation and continuing corrosion can be substantial. Furthermore, in natural and industrial environments where microorganisms are widely distributed, pitting corrosion is aggravated by the release of many reactive microbial metabolites. This is a report of a 28-day study aimed at the microbiologically influenced corrosion of joint welds by gas tungsten arc welding (GTAW) and shielded metal arc welding (SMAW) exposed to laminar and turbulent flows. The characterization of the planktonic microbial community indicated that laminar flow created an anoxic environment promoting the dominance of anaerobic microorganisms, in particular sulfate reducing bacteria (SRB). Both types of welded joints showed similar pit densities in the base metal (BM), heat-affected zone (HAZ) and weld metal (WM), nevertheless the pit depth was higher in the HAZ than the BM and WM. On the other hand, turbulent flow retained dissolved oxygen content, ensuring the presence of aerobic microorganisms, but there was no inhibition of SRB growth. Although the pit depth was low in both types of welded joints, the pit density was exacerbated in only one HAZ of each welded joint due to WM reinforcement height, while the other HAZ showed low pit density. This study demonstrates that turbulent flow can reduce the biocorrosion of non-welded areas but can aggravate welded joints biocorrosion.

Oceanic Microplankton Do Not Adhere to the Latitudinal Diversity Gradient.

A latitudinal biodiversity gradient has captivated ecologists for years, and has become a widely recognized pattern in biogeography, manifest as an increase in biodiversity from the poles to the tropics. Oceanographers have attempted to discern whether these distribution patterns are shared with marine biota, and a lively debate has emerged concerning the global distribution of microbes. Limitations in sampling resolution for such large-scale assessments have often prohibited definitive conclusions. We evaluated microbial planktonic communities along a ~ 15,400-km Pacific Ocean transect with DNA from samples acquired every 2 degrees of latitude within a 3-month period between late August and early November 2003. Next-generation sequencing targeting the Bacteria, Archaea, and Eukarya yielded ~ 10.8 million high-quality sequences. Beta-analysis revealed geographic patterns of microbial communities, primarily the Bacteria and Archaea domains. None of the domains exhibited a unimodal pattern of alpha-diversity with respect to latitude. Bacteria communities increased in richness from Arctic to Antarctic waters, whereas Archaea and Eukarya communities showed no latitudinal or polar trends. Based on our analyses, environmental factors related to latitude thought to influence various macrofauna may not define microplankton diversity patterns of richness in the global ocean.